G1391796 (LOC100286403)


Basic Information

Item Value
gene id G1391796
gene name LOC100286403
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 56424272 ~ 56437279 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1589476
ACCAAGCCACAACTTTATTTCCATCTCGGGTATAaattgtacaaacaatagtagatTAAACCAGCAAACTTTCAGAACCCCCTTCGACCAGCAGCCTACATCGTCAATTCCATAATAGCATTGACAATatcattgttgttgtttttaaggGCGCGTACAGCCTTCGCTCGCGACACGTTGGCTTGTGACATCACGAGTTCAATGTCCTTCACCTCAACCCCTGTCTCGTCAACCTctTCGCTCTCCTCTTGTACAGTGGGAGTCTGTGTGTTTTCCTGGACGTTCGACACAGCTTCTCCCTGTACCTTGAACTTCTCTGCCGCGGCAAGCTGGGCTTGTTGTGAAAGATCCTCGATCTGAGACacaaagggagagaaacagaccGTGACATCAGCGCTGTAACCTTTGGAAAGAACCCCAACACCTTGGTTGAATGGACATTACACTGCACATTTGACTGATACCATTAAGAATATGTAATTCTGGTTCTGAAAGAGCAGTTTAGATGAGATGGAATAACACTAACATGACATTAAAAAGGGATCAGAAAACAAAATTCAAACGGTATCCATCTTACCTTAGCCTCACCAAAGACAATGTACGTGTCTGATGCAGGGCTCTTGTAGACGTCTGGTTTGGTGATAACGAAAAGGATATTTTTAGACTTGCGAATGGTAACCCTGGTGACCCCCGTCACCTGCCTGAGACCCAGCTTAGACATTGCCTTTCGTGCCTTCTTTTCACTACGGCTCTGTTTGGCTTTGCTAACGGGTTCTTCATCTATTTCTGCAGCAGCTGCAAGCTGCGCTTGCTGTGTCTGTGCAGAGTCATGTTCCTCCAGATCTGGTACAGACTCATCACTGTCTGATTCAGTGCCAGACCCAGTCTCAACTTGCGGCTGTTGCATCTCCTGCTCAGTGACTGGGACCGTCTCTGTGGCTTCGCCAGGCATGCTTGTGTCGAGTCAGGATTCTATATCCAAGATGGTTGTGAGAGAGAAATTCTG
>TU1589480
ACCAAGCCACAACTTTATTTCCATCTCGGGTATAaattgtacaaacaatagtagatTAAACCAGCAAACTTTCAGAACCCCCTTCGACCAGCAGCCTACATCGTCAATTCCATAATAGCATTGACAATatcattgttgttgtttttaaggGCGCGTACAGCCTTCGCTCGCGACACGTTGGCTTGTGACATCACGAGTTCctcttcctctTCGCTCTCCTCTTGTACAGTGGGAGTCTGTGTGTTTTCCTGGACGTTCGACACAGCTTCTCCCTGTACCTTGAACTTCTCTGCCGCGGCAAGCTGGGCTTGTTGTGAAAGATCCTCGATCTTAGCCTCACCAAAGACAATGTACGTGTCTGATGCAGGGCTCTTGTAGACGTCTGGTTTGGTGATAACGAAAAGGATATTTTTAGACTTGCGAATGGTAACCCTGGTGACCCCCGTCACCTGCCTGAGACCCAGCTTAGACATTGCCTTTCGTGCCTTCTTTTCACTACGGCTCTGTTTGGCTTTGCTAACGGGTTCTTCATCTATTTCTGCAGCAGCTGCAAGCTGCGCTTGCTGTGTCTGTGCAGAGTCATGTTCCTCCAGATCTGGTACAGACTCATCACTGTCTGATTCAGTGCCAGACCCAGTCTCAACTTGCGGCTGTTGCATCTCCTGCTCAGTGACTGGGACCGTCTCTGTGGCTTCGCCAGGCATGCTTGTGTCGAGTCAGGATTCTATATCCAAGATGGTTGTGAGAGAGAAATTCTG
>TU1589475
ACCAAGCCACAACTTTATTTCCATCTCGGGTATAaattgtacaaacaatagtagatTAAACCAGCAAACTTTCAGAACCCCCTTCGACCAGCAGCCTACATCGTCAATTCCTGTGAATATAAGAATACAATGTGTTGATACATGTACAAACTAAGCCCTGTCATAGTTAAGTGCCAATCTCTTCTCAGGACAGAAAGGTTGGCTTCAGTAGACTCAGAAGAACGAAAGTCACTGTATCAATCATCACTGAAGAGAAAGGATCTCCAGCTAGTAGATCCTACGATAACTGACAGGTCACAACTCAAATCTACAAATATTTGAATTGAAGGGACCCTGTGCTGGATAATACTGTCTGGTGACAAGGGAATTGTGTGGTAAAATATACTTACCATAATAGCATTGACAATatcattgttgttgtttttaaggGCGCGTACAGCCTTCGCTCGCGACACGTTGGCTTGTGACATCACGAGTTCAATGTCCTTCACCTCAACCCCTGTCTCGTCAACctcttcctctTCGCTCTCCTCTTGTACAGTGGGAGTCTGTGTGTTTTCCTGGACGTTCGACACAGCTTCTCCCTGTACCTTGAACTTCTCTGCCGCGGCAAGCTGGGCTTGTTGTGAAAGATCCTCGATCTTAGCCTCACCAAAGACAATGTACGTGTCTGATGCAGGGCTCTTGTAGACGTCTGGTTTGGTGATAACGAAAAGGATATTTTTAGACTTGCGAATGGTAACCCTGGTGACCCCCGTCACCTGCCTGAGACCCAGCTTAGACATTGCCTTTCGTGCCTTCTTTTCACTACGGCTCTGTTTGGCTTTGCTAACGGGTTCTTCATCTATTTCTGCAGCAGCTGCAAGCTGCGCTTGCTGTGTCTGTGCAGAGTCATGTTCCTCCAGATCTGGTACAGACTCATCACTGTCTGATTCAGTGCCAGACCCTGTAAGCCACCCCCAGAGAAACAAGCATTATTCATGTGGTCACTGGCACGAGCTGCAGAAAACCAGTTCTTCTATAGTAGCCTTTGTAAGAGAATTGTAATTGTATAGGTATTTAACAGAGCAAAGTCTATGAGGCACAACAGAGACTGATACAAATCGAGATGTTGAATGAGCACAACATTGGTTGGTGGTAGGTGAATCTAACCTATTCATTTGTGGCAGTGAAACAGAATAAAAATGGGTATATGTGGATGAGGTTAACAAAAACGTCAGTGTAGAAATTAAGACCAGCTTAGAAatgtgaaatcaaatcaaatttatttatatagcccttcgtatcTGGAGTAGTAAAATCTTGCACATCCTTTGCATATGGATTTGAAAAGTAATCTCCCAACTTGACAAATCTGTATCACAATGACATAGAACTGCCACCCCCCTTGCCATTCCCCTCAAAAGTACTTTTATAGGCTGACAGAAATAgagcaccttcagaaagtattcacaccccatgaCTTGCCAACATTTTGTTAGACAATTTAAAAAAGGGATTAAATTGATTTTATCGAAGGCTTAATACACCATTTCAAAACGGAAGTCTGAAACATCTTAAATAGTCAagccttttgttatggcaagcctaaataagttcaggagtaaaaacgtGCTTAACAAgccacataagttgcatggactgtgtgcaatagtgtttaacacaAATTtcgaatgactacctcatctctgtatcccataCATACAATTGTatggtccctcagtcgagtagcGAATTTCAAATACAGAGTCAACCCCAAAAACCAGGGAGGTATTCCAATGCCTAGCAAAAGGGCAActaaaaaaagtataatttaaAAGCAGACACTAAATATCCCGTTGAGCAAGGTGAAGTCATTaattatcaatacacccagttaccacaaagatacaggcattctTCCTAAtgcagttgccagagaggaaggaaaccacccagggatttcaccatgaggccaatgttgactttcaaacagttagagtttaatggcttacaggagaaaactgaggatggatcaatattgtagttactccacaatactaacctaattgacagactgaaaaggaagcctgtacagaattaaaaacatattccaaaacaaacatcctgtttgcaacaaggcactaaagtaataccgcAAAAAACAATGAATGTTTTGTCCGGAATAGTGTTATGCTTGGGGTAAATACAATACAACGCATTAAtgagtaccactccatattttcaagcctagtggtggctgtatcatgttatgggtatgcttgtaatcgttaaggactgtggAGTTTCAGGATTTAAAAAAAGAACGAGCTAagcagacaaaatcctagaggaaaacctggttcagtctgcattcCACCAGACATTTGGAGAGTTcaactttcagcaggaaaataacctaaaactcaAGGCCAAATGTTCGAGTGGCAGAGTTAGTTTTTCCTTAAATCTACTTGATTTTCTAGCAATGCTCAAGAACCAATTTCACAGAGCTTGAAgacttttgaaaataataaaatgggCATATGTTAAAcaggtgtggaaagcttttaaagacttacccagataCAGCTGTGTGCCTAAGGTGCTTACtcgtgaatacttatgtaaatgagatctgCATTTAAtttaatagatttgcaaaaaaattatgttttcactttgacattagtgTGTAGATGGGTGCAAAAGTGTATTTCTAAAATCCATTTTGAAGttaggctgtaacaaaatgtggaataagtccaggggtatgaatactttgaaggcactgtaatagGGCTCCTCATTTCACTATAATTGAGAGACCCCCCCAGAAAAAAACAGTATATAAAAGCAGGGCATTTACATAATTTGAACCTTATCTTGGGAGGAAAAACACTGGAATGTCTTGTTTGAAAGTACAGTAAAAATGTACCCCAAATAATAAAAATGGCACTCAAATGGGAGCCCCGATTTCTCCAATCAATAGCTCCAATAACTACACGTGATCTTTGAAACAGGCCAGTTCAGAGGTTACATTTGAGGAAAAGCTAATACAGACTACTACAATCTCTACTTTCTTTAGCTTAAACCTTAAAAAGGGAAAAGAGACTTGAACGGGCCACAGAAATAAACACTGGTGGGCAAACagaggggacacagacagacaaaa
>TU1589478
ACCAAGCCACAACTTTATTTCCATCTCGGGTATAaattgtacaaacaatagtagatTAAACCAGCAAACTTTCAGAACCCCCTTCGACCAGCAGCCTACATCGTCAATTCCATAATAGCATTGACAATatcattgttgttgtttttaaggGCGCGTACAGCCTTCGCTCGCGACACGTTGGCTTGTGACATCACGAGTTCAATGTCCTTCACCTCAACCCCTGTCTCGTCAACctcttcctctTCGCTCTCCTCTTGTACAGTGGGAGTCTGTGTGTTTTCCTGGACGTTCGACACAGCTTCTCCCTGTACCTTGAACTTCTCTGCCGCGGCAAGCTGGGCTTGTTGTGAAAGATCCTCGATCTTAGCCTCACCAAAGACAATGTACGTGTCTGATGCAGGGCTCTTGTAGACGTCTGGTTTGGTGATAACGAAAAGGATATTTTTAGACTTGCGAATGGTAACCCTGGTGACCCCCGTCACCTGCCTGAGACCCAGCTTAGACATTGCCTTTCGTGCCTTCTTTTCACTACGGCTCTGTTTGGCTTTGCTAACGGGTTCTTCATCTATTTCTGCAGCAGCTGCAAGCTGCGCTTGCTGTGTCTGTGCAGAGTCATGTTCCTCCAGATCTGGTACAGACTCATCACTGTCTGATTCAGTGCCAGACCCTGTAAGCCACCCCCAGAGAAACAAGCATTATTCATGTGGTCACTGGCACGAGCTGCAGAAAACCAGTTCTTCTATAGTAGCCTTTGTAAGAGAATTGTAATTGTATAGGTATTTAACAGAGCAAAGTCTATGAGGCACAACAGAGACTGATACAAATCGAGATGTTGAATGAGCACAACATTGGTTGGTGGTAGGTGAATCTAACCTATTCATTTGTGGCAGTGAAACAGAATAAAAATGGGTATATGTGGATGAGGTTAACAAAAACGTCAGTGTAGAAATTAAGACCAGCTTAGAAatgtgaaatcaaatcaaatttatttatatagcccttcgtatcTGGAGTAGTAAAATCTTGCACATCCTTTGCATATGGATTTGAAAAGTAATCTCCCAACTTGACAAATCTGTATCACAATGACATAGAACTGCCACCCCCCTTGCCATTCCCCTCAAAAGTACTTTTATAGGCTGACAGAAATAgagcaccttcagaaagtattcacaccccatgaCTTGCCAACATTTTGTTAGACAATTTAAAAAAGGGATTAAATTGATTTTATCGAAGGCTTAATACACCATTTCAAAACGGAAGTCTGAAACATCTTAAATAGTCAagccttttgttatggcaagcctaaataagttcaggagtaaaaacgtGCTTAACAAgccacataagttgcatggactgtgtgcaatagtgtttaacacaAATTtcgaatgactacctcatctctgtatcccataCATACAATTGTatggtccctcagtcgagtagcGAATTTCAAATACAGAGTCAACCCCAAAAACCAGGGAGGTATTCCAATGCCTAGCAAAAGGGCAActaaaaaaagtataatttaaAAGCAGACACTAAATATCCCGTTGAGCAAGGTGAAGTCATTaattatcaatacacccagttaccacaaagatacaggcattctTCCTAAtgcagttgccagagaggaaggaaaccacccagggatttcaccatgaggccaatgttgactttcaaacagttagagtttaatggcttacaggagaaaactgaggatggatcaatattgtagttactccacaatactaacctaattgacagactgaaaaggaagcctgtacagaattaaaaacatattccaaaacaaacatcctgtttgcaacaaggcactaaagtaataccgcAAAAAACAATGAATGTTTTGTCCGGAATAGTGTTATGCTTGGGGTAAATACAATACAACGCATTAAtgagtaccactccatattttcaagcctagtggtggctgtatcatgttatgggtatgcttgtaatcgttaaggactgtggAGTTTCAGGATTTAAAAAAAGAACGAGCTAagcagacaaaatcctagaggaaaacctggttcagtctgcattcCACCAGACATTTGGAGAGTTcaactttcagcaggaaaataacctaaaactcaAGGCCAAATGTTCGAGTGGCAGAGTTAGTTTTTCCTTAAATCTACTTGATTTTCTAGCAATGCTCAAGAACCAATTTCACAGAGCTTGAAgacttttgaaaataataaaatgggCATATGTTAAAcaggtgtggaaagcttttaaagacttacccagataCAGCTGTGTGCCTAAGGTGCTTACtcgtgaatacttatgtaaatgagatctgCATTTAAtttaatagatttgcaaaaaaattatgttttcactttgacattagtgTGTAGATGGGTGCAAAAGTGTATTTCTAAAATCCATTTTGAAGttaggctgtaacaaaatgtggaataagtccaggggtatgaatactttgaaggcactgtaatagGGCTCCTCATTTCACTATAATTGAGAGACCCCCCCAGAAAAAAACAGTATATAAAAGCAGGGCATTTACATAATTTGAACCTTATCTTGGGAGGAAAAACACTGGAATGTCTTGTTTGAAAGTACAGTAAAAATGTACCCCAAATAATAAAAATGGCACTCAAATGGGAGCCCCGATTTCTCCAATCAATAGCTCCAATAACTACACGTGATCTTTGAAACAGGCCAGTTCAGAGGTTACATTTGAGGAAAAGCTAATACAGACTACTACAATCTCTACTTTCTTTAGCTTAAACCTTAAAAAGGGAAAAGAGACTTGAACGGGCCACAGAAATAAACACTGGTGGGCAAACagaggggacacagacagacaaaa

Function

NR:

description
Nascent polypeptide-associated complex subunit alpha

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1589476 False 1006 TUCP 0.47 7 56424272 56437279
TU1589480 False 758 TUCP 0.49 8 56424272 56437279
TU1589475 False 3154 lncRNA 0.40 5 56433131 56437279
TU1589478 True 2875 lncRNA 0.40 6 56433131 56437279

Neighbor

gene id symbol gene type direction distance location
LOC110491119 LOC106566720 coding downstream 73163 56352467 ~ 56359968 (-)
LOC110491118 LOC106571944 coding downstream 94591 56322691 ~ 56338540 (-)
LOC110492371 adcy6 coding downstream 139628 56240763 ~ 56293503 (-)
LOC110492367 LOC106566716 coding downstream 196226 56231265 ~ 56236905 (-)
LOC110492369 g6pd coding downstream 211553 56206812 ~ 56221578 (-)
LOC110492378 LOC106566727 coding upstream 106363 56543642 ~ 56563898 (-)
LOC110492379 LOC106566728 coding upstream 132846 56570125 ~ 56679900 (-)
LOC110492380 LOC106566729 coding upstream 276503 56713782 ~ 56729174 (-)
col9a3 LOC106566732 coding upstream 393481 56830760 ~ 56854519 (-)
LOC110491121 ogfr coding upstream 419792 56857071 ~ 56875920 (-)
G1391721 NA non-coding downstream 81144 56350987 ~ 56351987 (-)
G1391755 NA non-coding downstream 83367 56349540 ~ 56349764 (-)
G1391746 NA non-coding downstream 99657 56333155 ~ 56333474 (-)
G1391693 NA non-coding downstream 192461 56240316 ~ 56240670 (-)
G1391799 NA non-coding upstream 18865 56456144 ~ 56456559 (-)
G1391826 NA non-coding upstream 21862 56459141 ~ 56459352 (-)
G1391802 NA non-coding upstream 34452 56471731 ~ 56473616 (-)
G1391839 baz2a non-coding upstream 51393 56488672 ~ 56489237 (-)
G1391942 NA non-coding upstream 263986 56701265 ~ 56701492 (-)
G1391624 NA other downstream 207070 56225414 ~ 56226061 (-)
G1391586 NA other downstream 368269 56064503 ~ 56064862 (-)
LOC110492352 nua4l other downstream 606500 55824155 ~ 55826646 (-)
G1390030 ifrd2 other downstream 1446868 54984818 ~ 54986263 (-)
G1391869 NA other upstream 101313 56538592 ~ 56540929 (-)
LOC110492394 psma7 other upstream 1412395 57849674 ~ 57853907 (-)
LOC110492397 NA other upstream 1450212 57887491 ~ 57893319 (-)
G1393949 LOC105029132 other upstream 1767480 58204759 ~ 58207165 (-)
G1393997 LOC106566752 other upstream 1836749 58274028 ~ 58278427 (-)

Expression


Co-expression Network