G1391930


Basic Information

Item Value
gene id G1391930
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 56709432 ~ 56712162 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1589619
TTTATTTCAGtcgtatcttttttttttaatatcaTGCTTTGGCAACTCTATAACCAGCATAGACGAGGTACAAAGCGAAACGCTTTGTCTCAACCCAAATGATACAATCCTCCTTTTAAGTGTCCTTAAAATGTCAGTGGCGTGAGCCATGGAGTTCTCCTCGGGtttccttttctttttttgccTTTTTTATATCTGGGTGTATGGCACAGgaggctgaggggaggacggctcataataatgtctagaatggaatggtatcaaacacatggaaaatatgtatttggtgtGTTCAATACCATTCCATCaatccgttccagccattactatgagcccgtcctccccaattaaggtgtcaccgGCCGCCTGTGGTGTATGTTGGCAGGCAGCTGCCTCCATAGACACCCGCTTATTATACTGTACATCCCATTCTCAGATAGATAGTCTCTTGCCAGACGGCTTACTTCCGCAATCTTTGAATGTGCCGTTGCCCAAGGTCTGGCTATAAGAGACTAATTCTCAGatgggacgtgtgtgtgtgtgtgtgtgtgtgcatgcatgcccGTGTCTAGTTCTACCTGTGGTTATGCCTACCTGTGTGTGCCCGTGAGGAAGTGAAGGCTCTGCATGATTCATGCTTTAGTGTCTTTGCATTTtcacttttaaaaaaaagttgttgCCCTTGTGGCTTCATGGAGCTTGACAGACAGTTTAACTCCCCCTGTTTCCTTTTAAATCCTTTACCTTGTTTTCATTTCACCTTTTTGTTAATTTACAAAAAAGGCTTTTGTAATGAAGACAGTGAGTGGTAACTGAGTTATATTTTATATAAAGTCTTATTGGATGTTTGCTTACAACCCCTGACCCTTCCTTAACCCCTGTCCTGTGTGAAATAGATTCTGTGACTTCTGTTTGCCACATTTGGGCTGAAGGGGCCTTCTTGCTCCACCTGTCCAGTGATTTGGACATTGCAATTGGACACTTATGTTATGTCCTGTAGAGACCCAATGCTGTTGTCACAAATGGGACGAGTTACCATTCCTAGCCTGagctcagatctgtttgtgcttcgCCAACTTCTCTGACTAGCATTATAGTTGGCTGAAGCAtatactgatctgggaccaggctgcttGTTTGGTAGGTTGAGTAGTAGTATTGCTTCGGCAGGAAATAGATGACTTGAGTTTAGTCCTCATGTTGCTCTATCTAAAGCGTAAGTTGAAAGTGTGGAGGACTTCTGTTTTGAGTCTGTTACATGGCAATGTCTtaggaggaaaggaggagcagATTACTTTTATACCAGCCTTTTACTTTAATGTATCtgatatttaaaataaaataatctatATGAATTTAATGCTACTCTGTACTAAAAATACCTGTCAGATTTTTTTAGCTATTTTTATAGTTGAAAAAACTGTTAAAGTTCACTAATATtcaccacacacagagaaataTATATGAATAGTATTTTGCATCCTTATTGGAATGAGTTGTTTTTATACATCAAAAGACAAAGCTTGCTCCCCTTTAAGTCAGGGTGCACATTTCAGTGTGAGAGAACTAGTCCTATTTCATAGTTTCACCATCTTATACTCTATTTCATAGATTAGGCCCTGTATTGAATTAGAGTAAATAAGAACCACTCTGCCATAGGACAATGCTCTGAAAGCACTATACTGAAATTGTGTCTTCTGCAGTAATTACAGTAGAATACTATAAAACGATCTGCTATCCATGTAATTAGATAGCATTGGATCAGGATCAGCAAGGATCCTGTTATGTTTCTGTGTTTTATTGTTCTAAGGTGTGTCCTGCAGGGGTATTTAATTGGGCCGGAATGATACCAGTATCTCAATGGTTTTTTtcccatggcaaaaatgaaaacacgaagcagatCAAGTCTTTGGtcttttaaaaacctgctgtatgacacattgtgtgctatagcttggaaaataaatgtgacaacataATGAGGTTTGTTTCTAACATTAGGGTTGTTTTCTTAAAGAAGTTAAACCtgctttgtttccttgccacgatactaacgagtattGCGGTATTGGTATCGTCCCAGCCCTAGTATTTAACTTGAGCATTTGCCCTTCATCCATTCCTTTACTGATTGATTGGATATCATAGTTCGTCATGATACACCGTGCAAGGGACTGAGTAACATGAGCCTCCTTCATCCAGGTTAGGAGACATGATATTCCCCTCTGAGTTGTCTTCTCACTCGTACCACCACGCACACTATTGAAATATTCAGCATAGTGAAGCATGACACCAATGGATGCCACGGTCTGCACTATCAGCATTTTGGGTTGTAGCACTGATGTCTATAACCTAGCTCTTGACTGCAATGACCATTTGATCTCTGGTAAGGTGGCAATTTATCCACACAATGCAAAGACCCATGCTAATAGTTTATTAGTTTCATATTAACATTTTGAGTGGCAACTACCATTAATGCATTTGAGATGATGAGATGCATACATGCTTCATAACAGGCAGGAACAGAAAAAACACGACATTATTTCAGATAGTTTTGTTGGGTTATTTGGCTGCTTGCGTCTAAATGTTGTTGTATAATCCTTTTTTAAATGTGTCGTCTCTGATATGCTCTGGACCAGATGTATTTATGCGAAACCTtgtgatttctgttttttgtttgttagtatttttttatttcatgtTTGAATAAAGCCTTTGTTGACTATCCTGA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1589619 True 2731 lncRNA 0.39 1 56709432 56712162

Neighbor

gene id symbol gene type direction distance location
LOC110492379 LOC106566728 coding downstream 29532 56570125 ~ 56679900 (-)
LOC110492378 LOC106566727 coding downstream 145534 56543642 ~ 56563898 (-)
LOC110491119 LOC106566720 coding downstream 349464 56352467 ~ 56359968 (-)
LOC110491118 LOC106571944 coding downstream 370892 56322691 ~ 56338540 (-)
LOC110492371 adcy6 coding downstream 415929 56240763 ~ 56293503 (-)
LOC110492380 LOC106566729 coding upstream 1620 56713782 ~ 56729174 (-)
col9a3 LOC106566732 coding upstream 118598 56830760 ~ 56854519 (-)
LOC110491121 ogfr coding upstream 144909 56857071 ~ 56875920 (-)
LOC118939559 NA coding upstream 164136 56876298 ~ 56877789 (-)
LOC110492388 LOC106566734 coding upstream 203497 56915659 ~ 56937661 (-)
G1391942 NA non-coding downstream 7940 56701265 ~ 56701492 (-)
G1391839 baz2a non-coding downstream 220195 56488672 ~ 56489237 (-)
G1391802 NA non-coding downstream 235816 56471731 ~ 56473616 (-)
G1391826 NA non-coding downstream 250080 56459141 ~ 56459352 (-)
G1391799 NA non-coding downstream 252873 56456144 ~ 56456559 (-)
G1391980 NA non-coding upstream 56745 56768907 ~ 56769150 (-)
G1391983 NA non-coding upstream 61507 56773669 ~ 56773876 (-)
G1391985 NA non-coding upstream 62322 56774484 ~ 56774800 (-)
G1392017 NA non-coding upstream 113140 56825302 ~ 56825578 (-)
G1392043 NA non-coding upstream 156836 56868998 ~ 56869342 (-)
G1391869 NA other downstream 168503 56538592 ~ 56540929 (-)
G1391796 LOC100286403 other downstream 272153 56424272 ~ 56437279 (-)
G1391624 NA other downstream 483371 56225414 ~ 56226061 (-)
G1391586 NA other downstream 644570 56064503 ~ 56064862 (-)
LOC110492394 psma7 other upstream 1137512 57849674 ~ 57853907 (-)
LOC110492397 NA other upstream 1175329 57887491 ~ 57893319 (-)
G1393949 LOC105029132 other upstream 1492597 58204759 ~ 58207165 (-)
G1393997 LOC106566752 other upstream 1561866 58274028 ~ 58278427 (-)
LOC110492410 LOC106566756 other upstream 1590349 58302511 ~ 58315644 (-)

Expression


Co-expression Network