G1392071


Basic Information

Item Value
gene id G1392071
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 56885069 ~ 56886571 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1589773
cctttatttaaccaggtaggcaagttgagaacaagttctcatttacaattgcgacctggccaaggtaaagcaaagcagttcgacagatacaacgacacagagttacacatggagtaaaacaaacatacagtcaataatacagtataaacaagtctatatacaatgtgagcaaatgaggtgagaagggaggtaaaggcaaaaaaggccatggtggcaaggtaaatacaatatagcaagtaaaacaacTCTAATTTGTAATGGAACGGACTCATGATCGAGGGCTAATGGACGCCTAGCTAGCCAATTcaactaacattagctagctacctcCAAAGATTTTGAATATTGTTTAATTAAAATGGCTCTAATCTTTGTTTGTTACAAAGCTACTATGCCAACTAGCTAGCACTCTATCTAGCCTTTagcctgttagctagctaacattactgaCTGGAAGTAGCTTTTCATCCCTTTGAACCAAACTAGTCAGTACATAATTAGTCAGCCTTGGCTAACAAGGGTTAGAAAGATAAAGTATGTTAGCTAATACGCACATTATTTATGGCAATATTAACGGTAACTAGTATTGACAAAGTCTGGCGGGAAGAAATTGTTGATAGCTAGCAATAGCTAATTGGCTAGCTGGTGTTAGAGGCTGCGTCTTTCGAATCCGGTATCAGGAAAAATAAAAGTCAGAATCTGTCGTTAATTATCTTTAATTAAATTCAAGcaataaatggcaaatgcaatTTTTCGTATATACGGGTTCACTGTAACACCACCCAGGGTAGAACAGAGAACTGACAGGATGTAAGTAAACAGCTGTTCTTatactgtgataggccaacatACGGGTTGGAACTATGTCTATCACTGTAGAGGCTGAGCCTGGTTTAGACTTACTCAGCCTATCGCAGGCGCTCAGGCTAGTCCCAGCCTCTTGGCGCTTCTTGGAGTCCACCCTCTGTcgatgtatatattcttattgtTCTGGTATCACACCCAAGTTATAACAGTTGCTCAGTTCctgctattgtgttgttcagtatttttccatctcaTTTAAACCTCGCGATGACCACCCCTCCCTATACCTGATTAACCACAACTTTGTAACATGCAGCAAGTCACACCATGTGCTCAAtattgtcacacacacagacaggcaaggCAAATGTAGCAAACAGTACACCGCTTTGCAACATTCAAGTCACACCATGTTGCTCAGTTCttgtcacacacagacacagacacatacaaagcAGCTGTTGTTCAAACAATTCAATCTTACGTAATATGGTAGCGGGTTATAGAGCATAAGCATAAATCCTCACACTGGCTAGATGTGCCATTGTTGCCCTGTTGATTAGATGGCTAAGTTAGCTACAGTgtgtttggaaagtattcagacctgactttatccacatttttttatgttacagccttattctaattgattcaattgttttttgttgttgctcaaactacacacaattctgcata

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1589773 True 1503 lncRNA 0.40 1 56885069 56886571

Neighbor

gene id symbol gene type direction distance location
LOC118939559 NA coding downstream 7280 56876298 ~ 56877789 (-)
LOC110491121 ogfr coding downstream 9149 56857071 ~ 56875920 (-)
col9a3 LOC106566732 coding downstream 30550 56830760 ~ 56854519 (-)
LOC110492380 LOC106566729 coding downstream 155895 56713782 ~ 56729174 (-)
LOC110492379 LOC106566728 coding downstream 205169 56570125 ~ 56679900 (-)
LOC110492388 LOC106566734 coding upstream 29088 56915659 ~ 56937661 (-)
LOC110492390 taf4 coding upstream 946878 57833449 ~ 57845200 (-)
LOC110492394 psma7 coding upstream 963833 57849674 ~ 57853907 (-)
LOC110492397 NA coding upstream 1001138 57887491 ~ 57893319 (-)
LOC110492399 cdh26 coding upstream 1011900 57898471 ~ 57921688 (-)
G1392070 NA non-coding downstream 1426 56883421 ~ 56883643 (-)
G1392069 NA non-coding downstream 1913 56882721 ~ 56883156 (-)
G1392068 NA non-coding downstream 2431 56882310 ~ 56882638 (-)
G1392065 NA non-coding downstream 2802 56882055 ~ 56882267 (-)
G1392064 NA non-coding downstream 3536 56881085 ~ 56881533 (-)
G1392077 NA non-coding upstream 4158 56890729 ~ 56890936 (-)
G1392110 NA non-coding upstream 23079 56909650 ~ 56909933 (-)
G1392111 NA non-coding upstream 23908 56910479 ~ 56910785 (-)
G1392112 NA non-coding upstream 24227 56910798 ~ 56911036 (-)
G1392191 NA non-coding upstream 86024 56972595 ~ 56972800 (-)
G1391869 NA other downstream 344140 56538592 ~ 56540929 (-)
G1391796 LOC100286403 other downstream 447790 56424272 ~ 56437279 (-)
LOC110492371 adcy6 other downstream 591597 56240763 ~ 56293503 (-)
G1391624 NA other downstream 659008 56225414 ~ 56226061 (-)
G1391586 NA other downstream 820207 56064503 ~ 56064862 (-)
G1393949 LOC105029132 other upstream 1318188 58204759 ~ 58207165 (-)
G1393997 LOC106566752 other upstream 1387457 58274028 ~ 58278427 (-)
LOC110492410 LOC106566756 other upstream 1415940 58302511 ~ 58315644 (-)

Expression


Co-expression Network