G1392107


Basic Information

Item Value
gene id G1392107
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 56909819 ~ 56910309 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1589809
TTATGTTTTCAGATGAGACAAATCTTGTTTTTCTTGCAACTGTCATTGAAATGTATATCAGGTTTGGTTTTTAATCTTGGGAAGCCCTGTCTTGATGTTGACAAAATATTCTAACATATTATTAaaatttaactagggaagtcagttaagaacaaattattatttacatttgacggcctaccccggccaaaccctgatgacactgggccaattgtgcgccgccctataggactcccaatcacgtccggatgtgatacagcctggataagATGAGAAGGAATCATAAACAAAATGAAAATAATGCATATTTTCGATGTTTTTCCCCCAATCCCTTAACATTTCTATATAATAAACTCTACAACTAGCTGTCTATCTTTAATAGAGATAACATGCTCCAGGAACCAACACTGAGACCATTTGACTGCTTGAAGGTCATGTGTAGtttcacactcatacacacacacatgcacgcacgcacacacacacacaca

Function

NR:

description
vitellogenin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1589809 True 491 lncRNA 0.38 1 56909819 56910309

Neighbor

gene id symbol gene type direction distance location
LOC110492387 LOC106566767 coding upstream 2085 56904943 ~ 56907957 (+)
LOC110492385 LOC106566733 coding upstream 79226 56825787 ~ 56830593 (+)
si:ch73-181d5.4 LOC106566730 coding upstream 89374 56790783 ~ 56820445 (+)
LOC118939462 LOC106566730 coding upstream 118890 56779988 ~ 56790929 (+)
LOC118939558 NA coding upstream 134741 56767646 ~ 56775078 (+)
LOC110492389 cdh4 coding downstream 335457 57245766 ~ 57788596 (+)
LOC110492393 lsm14b coding downstream 935701 57846010 ~ 57850014 (+)
LOC110492391 ss18l1 coding downstream 943592 57853901 ~ 57873777 (+)
LOC110492396 y4629 coding downstream 966140 57876449 ~ 57887706 (+)
LOC118936470 NA coding downstream 1044607 57954916 ~ 57964183 (+)
G1392105 NA non-coding upstream 349 56909271 ~ 56909470 (+)
G1392088 NA non-coding upstream 13276 56896295 ~ 56896543 (+)
G1392066 NA non-coding upstream 23413 56885743 ~ 56886406 (+)
G1392067 NA non-coding upstream 26251 56883347 ~ 56883568 (+)
G1392109 NA non-coding downstream 3033 56913342 ~ 56913542 (+)
G1392115 NA non-coding downstream 4175 56914484 ~ 56914763 (+)
G1392190 NA non-coding downstream 62174 56972483 ~ 56972838 (+)
G1392220 NA non-coding downstream 82195 56992504 ~ 56992822 (+)
G1392257 NA non-coding downstream 118456 57028765 ~ 57029152 (+)
G1391254 NA other upstream 662946 56246515 ~ 56247620 (+)
G1390616 LOC106566696 other upstream 1086627 55793024 ~ 55823192 (+)
G1390527 NA other upstream 1269520 55640022 ~ 55640299 (+)
G1390508 NA other upstream 1276981 55628694 ~ 55632838 (+)
G1392601 NA other downstream 455642 57365951 ~ 57366517 (+)
G1392616 NA other downstream 486631 57396940 ~ 57397177 (+)
G1392617 NA other downstream 491176 57401485 ~ 57402530 (+)
G1393570 LOC106566761 other downstream 1509077 58419386 ~ 58423502 (+)
G1393647 LOC106613431 other downstream 1655827 58566136 ~ 58566794 (+)

Expression

G1392107 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.
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G1392107 Expression in each Bioproject

Bar chart with 11 bars.
G1392107 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
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Co-expression Network