XLOC_032933


Basic Information

Item Value
gene id XLOC_032933
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 31745291 ~ 31749784 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065180
gtgcattgtgtctgatattgcatctctgggaaatacagtctcagcttgcattatCAAGGCTACATCCAGATGCCATTGCTCAAGTCATCCTGAAAAAAAACTGACAGAAGAGGTCTTCCTGAAGATAAGACAAAgggtAAAATGCACTGAATATTTGGATCATAcagagagCATCGGCAGCAGCAGGAGCAGAAACTGCGGGTTGTGCTGATGCTCTTTCATCTCCTCTGGCTGTGGATCAAGCAGTGTGTTCTGCTGCACCCGcttatcctcctcctcctccctcttCATCCTCCACCCTCCGCCTGTCTGGAGGAGACACTGATGCAGCATCCCAGAGGAGTTCAGTCACCATCAGCGTATGCATGCTTTTAACCCTCATAACGCAGGCTTTTTTCTTTAGTCCTAGTCTATCTATATGATACATGTGTGCTTAACTAAATGAAGACATTTAATGGActgctattatttttatatacacagaGCTATACATTTCCTAATTTTGTCCTCAATTGTAAACCTGTAAAACTTTCTGCATTTTCACtgaactttttttaaatacaattgttttaataatacCAATTTGGTCATACCTTTTTATAAGTATTTTAAACCAATTTTATACCTGTTTTGAAAATGAGTTTTTTGGAGATGTTGTCAGGTTTTGCTcacctttaattaaattaaattaaattagtacCCAAAATATTGTTGAGTTggtacagacacacatacacagttgTCAATATTTGAAGTGGGTCATATTTTTTTATCCTATTACAAGGTTGTGATggacaaatgtgtgtgtgtaaaaaatatgttgacaaaataaaaacaaaaagtattttgtttactttttatttatttatttacaaatgctttCCTATTTATAGTACTTTacattaatgtaaatgtaattagatttatgatttatttcataataataacg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065180 True 949 lncRNA 0.35 3 31745291 31749784

Neighbor

gene id symbol gene type direction distance location
XLOC_032932 cachd1 coding downstream 5582 31590751 ~ 31739709 (-)
XLOC_032931 raver2 coding downstream 168894 31430791 ~ 31576397 (-)
XLOC_032930 ak4 coding downstream 380740 31350101 ~ 31364551 (-)
XLOC_032929 dnajc6 coding downstream 396292 31279542 ~ 31348999 (-)
XLOC_032928 lepr coding downstream 511595 31184058 ~ 31233696 (-)
XLOC_032934 ror1 coding upstream 22398 31772182 ~ 31987940 (-)
XLOC_032935 si:dkey-209n16.2 coding upstream 54881 31804665 ~ 31806345 (-)
XLOC_032936 pgm1 coding upstream 260399 32010183 ~ 32025225 (-)
XLOC_032937 efcab7 coding upstream 279447 32029231 ~ 32045983 (-)
XLOC_032938 alg6 coding upstream 315310 32065094 ~ 32087111 (-)
XLOC_032927 CR847887.1 non-coding downstream 598036 31069530 ~ 31147255 (-)
XLOC_032920 NA non-coding downstream 1286276 30452287 ~ 30459015 (-)
XLOC_032919 FP236850.1 non-coding downstream 1523321 30221834 ~ 30221970 (-)
XLOC_032918 FP236850.2 non-coding downstream 1542254 30202921 ~ 30203037 (-)
XLOC_032916 NA non-coding downstream 1659689 30083946 ~ 30085602 (-)
XLOC_032940 NA non-coding upstream 446024 32195808 ~ 32196825 (-)
XLOC_032944 NA non-coding upstream 665292 32415076 ~ 32416753 (-)
XLOC_032945 LO017955.2 non-coding upstream 824212 32573996 ~ 32592792 (-)
XLOC_032946 NA non-coding upstream 937218 32687002 ~ 32687386 (-)
XLOC_032952 NA non-coding upstream 1440798 33190582 ~ 33210388 (-)

Expression


Co-expression Network