Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_032934 |
| gene name | ror1 |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007117.7 |
| NCBI id | CM002890.2 |
| chromosome length | 60270059 |
| location | 31772182 ~ 31987940 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| ror1 | Predicted to enable Wnt-protein binding activity. Predicted to be involved in positive regulation of intracellular signal transduction; positive regulation of kinase activity; and positive regulation of neuron projection development. Predicted to act upstream of or within protein phosphorylation and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be integral component of plasma membrane. Is expressed in gonad. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 108. Orthologous to human ROR1 (receptor tyrosine kinase like orphan receptor 1). |
| id | name | namespace |
|---|---|---|
| GO:0033674 | positive regulation of kinase activity | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0010976 | positive regulation of neuron projection development | biological_process |
| GO:0043408 | regulation of MAPK cascade | biological_process |
| GO:0043410 | positive regulation of MAPK cascade | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0043123 | positive regulation of I-kappaB kinase/NF-kappaB signaling | biological_process |
| GO:0007399 | nervous system development | biological_process |
| GO:0014068 | positive regulation of phosphatidylinositol 3-kinase signaling | biological_process |
| GO:0007169 | transmembrane receptor protein tyrosine kinase signaling pathway | biological_process |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0043235 | receptor complex | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0017147 | Wnt-protein binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0004672 | protein kinase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-6104 | Predicted to enable Wnt-protein binding activity. Predicted to be involved in positive regulation of intracellular signal transduction; positive regulation of kinase activity; and positive regulation of neuron projection development. Predicted to act upstream of or within protein phosphorylation and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be integral component of plasma membrane. Is expressed in gonad. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 108. Orthologous to human ROR1 (receptor tyrosine kinase like orphan receptor 1). |
| ensembl_id | ENSDARG00000015176 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00063984 | False | 4562 | mRNA | 0.47 | 9 | 31772182 | 31987940 |
| TCONS_00063985 | True | 2826 | mRNA | 0.53 | 8 | 31773747 | 31827597 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_032933 | NA | coding | downstream | 22398 | 31745291 ~ 31749784 (-) |
| XLOC_032932 | cachd1 | coding | downstream | 32473 | 31590751 ~ 31739709 (-) |
| XLOC_032931 | raver2 | coding | downstream | 195785 | 31430791 ~ 31576397 (-) |
| XLOC_032930 | ak4 | coding | downstream | 407631 | 31350101 ~ 31364551 (-) |
| XLOC_032929 | dnajc6 | coding | downstream | 423183 | 31279542 ~ 31348999 (-) |
| XLOC_032936 | pgm1 | coding | upstream | 22243 | 32010183 ~ 32025225 (-) |
| XLOC_032937 | efcab7 | coding | upstream | 41291 | 32029231 ~ 32045983 (-) |
| XLOC_032938 | alg6 | coding | upstream | 77154 | 32065094 ~ 32087111 (-) |
| XLOC_032939 | foxd3 | coding | upstream | 104092 | 32092032 ~ 32093830 (-) |
| XLOC_032940 | NA | coding | upstream | 207868 | 32195808 ~ 32196825 (-) |
| XLOC_032927 | CR847887.1 | non-coding | downstream | 624927 | 31069530 ~ 31147255 (-) |
| XLOC_032920 | NA | non-coding | downstream | 1313167 | 30452287 ~ 30459015 (-) |
| XLOC_032919 | FP236850.1 | non-coding | downstream | 1550212 | 30221834 ~ 30221970 (-) |
| XLOC_032918 | FP236850.2 | non-coding | downstream | 1569145 | 30202921 ~ 30203037 (-) |
| XLOC_032944 | NA | non-coding | upstream | 427136 | 32415076 ~ 32416753 (-) |
| XLOC_032945 | LO017955.2 | non-coding | upstream | 586056 | 32573996 ~ 32592792 (-) |
| XLOC_032946 | NA | non-coding | upstream | 699062 | 32687002 ~ 32687386 (-) |
| XLOC_032952 | NA | non-coding | upstream | 1202642 | 33190582 ~ 33210388 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| bowfin (Amia calva) | AMCG00005223 | NA | coding | CM030140.1 | CM030140.1 | 19219826 ~ 19226999 (-) |
