XLOC_032936 (pgm1)


Basic Information

Item Value
gene id XLOC_032936
gene name pgm1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 32010183 ~ 32025225 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063987
AGCTCTGAAAGGCCAATGTGTGAGTATATCGAGTCTACGTGTAGaccagtgaacacacacacaatccgCTGGGCTCCCGGATAGTGACACATACACCTGACCGCTGCTGCACCATGGTGAAAATCACGGTTATCAAGACCAAACCGTACACCGACCAAAAACCCGGAACCAGCGGCTTAAGAAAGCGGGTAACGGTCTTCCAGCAGAACCAGCATTACGCGGAGAACTTCATCCAGAGTATCATTTCCACGGTTGACCCTGCGCAGAGGCAGGAGGGCGCGCTGGTGGTGGGAGGAGATGGACGCTTTTTCATGAAAGACGCGATTCAGCTCATCATCCAGATTGCTGCTGCTAATGGGATTGGCAGGCTAGTCATTGGTCAGGATGGGATTATGTCAACACCTGCAGTTTCCTGTGTGATCCGTAAAATCAAAGCCATCGGTGGGATCATCCTGACAGCCAGTCACAATCCTGGTGGCCCAAATGGAGACTTTGGCATCAAGTTCAACATATCCAGTGGAGGTCCTGCACCAGAGGGTATCACAGACAAAATCTTTCAGATCAGCAAGAGCCTCCAGGAATATCACATCTGCCCTGAGCTCAAGGTGGACCTCTCCACAATTGGGAAACAAACCTTTGAGGTGGACACCTTCAAGCCCTTTActgTTGAAATCGTGGACTCTGTGGAATCCTATGCAGAAATGCTCAGAGATATCTTTGATTTTGCTGCTCTGAAGGAATTGCTCTCAGGACCCAATCATATCAATGTGCGACTTGATGCAATGCATGGAGTGGTGGGTCCATATGTGAAGAAGATTGTGTGTGAAGAGCTTGGTTCTCCTGCTAACTCTGCCGTGAACTGTGTCCCCTCTGAGGATTTTGGGGGACACCATCCTGACCCCAATTTAACATATGCTGCTGACCTGGTCAACACCATGAAGGGAGGGGAATATGACTTTGGAGCAGCATTTGATGGCGATGGTGATCGTAACATGGTTTTGGGTAAGCATGGGTTCTTTGTAAACCCTTCTGACTCTGTGGCAGTCATTGGTGCCAACATTACATCCATCCCGTACTTCCAGAAGACTGGCGTAAAGGGTCTGGCTCGCAGTATGCCCACCAGCGGGGCTTTGGACAATGTGGCCAAAGCTCTGAAGATGCCGCTTTATGAAACCCCCACAGGCTGGAAATTCTTTGGAAACTTGATGGATGCTGGCAAGTTATCGCTGTGCGGTGAAGAAAGTTTTGGTACTGgttCTGATCACATCCGGGAGAAAGACGGTCTGTGGGCAGTTCTTGCGTGGCTCTCAATACTGGCTACCCGCAAACAGAGTGTAGAGGATATTATGAAAGACCACTGGCAGAAGTTTGGACGCAACTTTTTCACAAGGTACGACTATGAAGAAGTGGACTCTGATGCTGCAAATAAGATGATTGATCACTTACAGACCACAATGTTCGATAAAGCCTTTGTAGGGCAGACGTTCACCTCGGGGGATAAAACGTATCAAGTGGAGAAGGCTGATAACTTTGAGTACACAGACCCTGTGGACGGCAGTGTTTCTAAAGGACAGGGTTTGAGGATAATCTTTTCTGATGGCTCGCGGATCATCTTCCGTCTCAGCGGGACAGGCAGTGCCGGGGCAACTATCAGACTTTACATTGACAGCTATGAGAAAGACCCCCAGAAAATCTACCAGGACCCACAGGTCATGTTGGCTCCTCTGGTGGACATTGCATTAAAGATCTCTCAGCTCCAGGAAAAAACAGGCCGCGCCGCTCCAACTGTGATCACATAATTATTCTCCCAAATTCACTTGATCCAGCCCAAACTAGCCCTCACTGTATCGAGTAATGCCTTACTTTATTTTCACTTCAGTTTCATACCCCAGTCATCAAGTGTTCAGTGTGTCTAGATTGTGTCACGTTTACGGTGCTCCACATGTACAAACAAAGATCTATATCTATTATGAATGGAGAAAATATAAAATAGAGATTATAAAATCAA

Function

symbol description
pgm1 Predicted to enable phosphoglucomutase activity. Predicted to be involved in carbohydrate metabolic process. Predicted to act upstream of or within glucose metabolic process. Predicted to be active in cytosol. Is expressed in central nervous system; digestive system; myotome; notochord; and yolk syncytial layer. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation It; endometrial cancer; and teratoma. Orthologous to human PGM1 (phosphoglucomutase 1).

GO:

id name namespace
GO:0071704 organic substance metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004614 phosphoglucomutase activity molecular_function
GO:0016868 intramolecular transferase activity, phosphotransferases molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1245 Predicted to enable phosphoglucomutase activity. Predicted to be involved in carbohydrate metabolic process. Predicted to act upstream of or within glucose metabolic process. Predicted to be active in cytosol. Is expressed in central nervous system; digestive system; myotome; notochord; and yolk syncytial layer. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation It; endometrial cancer; and teratoma. Orthologous to human PGM1 (phosphoglucomutase 1).

Ensembl:

ensembl_id ENSDARG00000013561

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063987 True 2008 mRNA 0.48 11 32010183 32025225

Neighbor

gene id symbol gene type direction distance location
XLOC_032934 ror1 coding downstream 22243 31772182 ~ 31987940 (-)
XLOC_032935 si:dkey-209n16.2 coding downstream 203838 31804665 ~ 31806345 (-)
XLOC_032933 NA coding downstream 260399 31745291 ~ 31749784 (-)
XLOC_032932 cachd1 coding downstream 270474 31590751 ~ 31739709 (-)
XLOC_032931 raver2 coding downstream 433786 31430791 ~ 31576397 (-)
XLOC_032937 efcab7 coding upstream 4006 32029231 ~ 32045983 (-)
XLOC_032938 alg6 coding upstream 39869 32065094 ~ 32087111 (-)
XLOC_032939 foxd3 coding upstream 66807 32092032 ~ 32093830 (-)
XLOC_032940 NA coding upstream 170583 32195808 ~ 32196825 (-)
XLOC_032941 atg4c coding upstream 274793 32300018 ~ 32315494 (-)
XLOC_032927 CR847887.1 non-coding downstream 862928 31069530 ~ 31147255 (-)
XLOC_032920 NA non-coding downstream 1551168 30452287 ~ 30459015 (-)
XLOC_032919 FP236850.1 non-coding downstream 1788213 30221834 ~ 30221970 (-)
XLOC_032918 FP236850.2 non-coding downstream 1807146 30202921 ~ 30203037 (-)
XLOC_032944 NA non-coding upstream 389851 32415076 ~ 32416753 (-)
XLOC_032945 LO017955.2 non-coding upstream 548771 32573996 ~ 32592792 (-)
XLOC_032946 NA non-coding upstream 661777 32687002 ~ 32687386 (-)
XLOC_032952 NA non-coding upstream 1165357 33190582 ~ 33210388 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_05142661_05150544 PGM1, PGM2 coding CI01000340 null 5142458 ~ 5150627 (-)
rainbow trout (Oncorhynchus mykiss) LOC110508228 NA coding NC_048592.1 CM023246.2 33563935 ~ 33568603 (-)