XLOC_032937 (efcab7)


Basic Information

Item Value
gene id XLOC_032937
gene name efcab7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 32029231 ~ 32045983 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063988
TTGAACTGCGCACAGCTGGGTAGAGTTTGTTTACACAACAGCCATGGCAATCAGACTCAATAGTGAACATCACCGATAATACAAAAAGGTTACAGCTTCGGCTCTCTAGCTCACTGTTATCATTACAGCATGACGTTTCGATAGCATATTGACTATATTTTCATAATGCCGCGCTCGGAGGAGGAGAGGTTTTATATGACATGCAGGGCTGCTTATCTGTCTGTGTTCAGATCCAGCCTGGTTAATATGACTTCAAAAGATCAGCTGTGCACGGTTCTTCAGCAAGCAGGTAGAAACCCGTCACAGAAAGCTTTAGACAAATACTGGCCACCTGGAACCAAGAAGCTGAATTTTGATGATTTTTGTGAGATactgaaaaaggaaaaaacagcAGAACCAGACCAGCTCATGACAATTTTCAAGAAATTTGACACAAATGGTGATGGATATATTTCACACGATGAGCTTAGCAGAATCCTTACTTCAtctGGCGAAAAAATGTCACATAAAGAAGTGGATGAAATCTTTACTTTAGCAGATGTCAACAAAGATGGAAAATTAGACTACGCAGAGGTatggtttacaattttttttatgagTAGGGTTGTAGAGAAATGTCAAGCAGCAGCACTGGAGAAGCTCGAGGCTGATGTCAAACTGAAGAGGCAGAACTTTGGCAGCCAGCTGAACACTCCACAGAGCTTAGAGTCCCAACCTGAGCCTCCATCTTCAGAATCGCAGCACAGAACAGAGCTGGAGCCCACGCAGAAGAAAGATCGCTCATTATCCAGACCATCATCAGCTCGCAGTCGACGGTCATCTTCATCCACAGCTATCACTATGGGCATCGGTGGCATTAAGACTGGCAGACTGGCAGAACCCAAATCTTTACAGGATTGGCATCATACTTTTATGAGAGGCTGTTTTTATATGGAAGACGATGGATCGATTATTTCTCTCCAGTATCGCCTCCATGTTCCTCAAACTACCAGTGTCTACCTGACCATACAACCCCTCAACCTTAGCCCGATTCCTGACAAGCCTTCACCATGGATGTGTGTGGACACAGCTCTCTATGTGCTGACGGGAAACGAGACAAAAGAAGATTCAAACTTGGTTTGTTTTACCGAGTTAAGAGATAAGGAGAGGTTTTTGTGGAGGGGAGAGCTCAGCGCCGGCTCATATCTGCTTATGCCCTTCACCACCGGCTGCAGACTGAAGAGAATGCGGAAGAACAGCCCTAAAACTGCTCAACTAGTCAACCGCGTGCAGTCTGGAGAGCTGGAGCTAACCAAAGAGTTCAAGGCGGTGTTGTCTGACATCTTTGAAGTGATTGATTTGGATGGCAGTGGTCTGCTGAGTCTAGAAGAATACAATTTCTTTGAGCAGAGAACCAGTGGAGAGAAATGTGATGAGGATGCGTGGGCTATCTGTAAAGAAAACTTCGACACTAAGAAAAATGAGTTAACTAGACAAGGTTTCTTGGAGCTTAACCTGATGGAGGCGAATGATCGCGAGGGAGACCCTAGTGACTTGTGGCTCACCCTGGAGGCCATGGGCTACAACCACAGCTTGGAGATGGTGGAGTCCTGTCCATTTGTCATTGATGTCTACTGTGAGGATGTCAAAGCAACTCTTCAGGCAGTTCATTTGGATTCTGGGGTGAAGATGTTGAATTCTGCTGTACAGAGATCCATCACGTCCAAAGCAGAGGCTAAAGCTCTGAAGGGCCATGAGAATGTGCTTGTTTACACATACAAAGGAGAGAGCAGGATTTCATCAGTCATTGCTAATAAGTCCAATCAGAAGGTGACGGTGCACATCAGCAATGAGCAAAGCAAAAACTTTGTGAGCAGCAGAGGCATGAGTGTGTTTGCAGTGGAGGTTCCTGCTAGAACTAAAATGGTTTGTCAGCACGTCATGGCTTTAAACGATCAACAGGAGTGGACTTACAACTGCACTGAGAGCATTATACCAAGTTTGTAAATGCTGCAGTTGTGACATTTATTATGAGGCAACAAAGAAAGTAGTAACATAATATTGTTTGCTTGTTATAACTATTGCAAACATTAATAATAgttttcagatttgtttattgTTCCTTTCAGCAAAATGCAATCatgattttcatttgtttttgtaaataaagcagtttatattttatttttatttgttttgcatttttattattttgttatgtgtttttaatgtaatattttttttggtttctgttaGCATTGTGCAAGTCGCTTCGAGAGATTGTGTGCACTCCTCTAATGAATTTGCGTAAGTTTCAAGTGAGTCAATtttaagaatagaatagaatgtagggtttaaatttaataaaaagtgaaaaGGTATGAGAGCGAGCTTTAAA
>TCONS_00063989
ACACAACAGCCATGGCAATCAGACTCAATAGTGAACATCACCGATAATACAAAAAGGTTACAGCTTCGGCTCTCTAGCTCACTGTTATCATTACAGCATGACGTTTCGATAGCATATTGACTATATTTTCATAATGCCGCGCTCGGAGGAGGAGAGGTTTTATATGACATGCAGGGCTGCTTATCTGTCTGTGTTCAGATCCAGCCTGGTTAATATGACTTCAAAAGATCAGCTGTGCACGGTTCTTCAGCAAGCAGGTAGAAACCCGTCACAGAAAGCTTTAGACAAATACTGGCCACCTGGAACCAAGAAGCTGAATTTTGATGATTTTTGTGAGATactgaaaaaggaaaaaacagcAGAACCAGACCAGCTCATGACAATTTTCAAGAAATTTGACACAAATGGTGATGGATATATTTCACACGATGAGCTTAGCAGAATCCTTACTTCAtctGGCGAAAAAATGTCACATAAAGAAGTGGATGAAATCTTTACTTTAGCAGATGTCAACAAAGATGGAAAATTAGACTACGCAGAGTTTTGCAGGCTGCTCGGGTCCACAGTAGAGAAATGTCAAGCAGCAGCACTGGAGAAGCTCGAGGCTGATGTCAAACTGAAGAGGCAGAACTTTGGCAGCCAGCTGAACACTCCACAGAGCTTAGAGTCCCAACCTGAGCCTCCATCTTCAGAATCGCAGCACAGAACAGAGCTGGAGCCCACGCAGAAGAAAGATCGCTCATTATCCAGACCATCATCAGCTCGCAGTCGACGGTCATCTTCATCCACAGCTATCACTATGGGCATCGGTGGCATTAAGACTGGCAGACTGGCAGAACCCAAATCTTTACAGGATTGGCATCATACTTTTATGAGAGGCTGTTTTTATATGGAAGACGATGGATCGATTATTTCTCTCCAGTATCGCCTCCATGTTCCTCAAACTACCAGTGTCTACCTGACCATACAACCCCTCAACCTTAGCCCGATTCCTGACAAGCCTTCACCATGGATGTGTGTGGACACAGCTCTCTATGTGCTGACGGGAAACGAGACAAAAGAAGATTCAAACTTGGTTTGTTTTACCGAGTTAAGAGATAAGGAGAGGTTTTTGTGGAGGGGAGAGCTCAGCGCCGGCTCATATCTGCTTATGCCCTTCACCACCGGCTGCAGACTGAAGAGAATGCGGAAGAACAGCCCTAAAACTGCTCAACTAGTCAACCGCGTGCAGTCTGGAGAGCTGGAGCTAACCAAAGAGTTCAAGGCGGTGTTGTCTGACATCTTTGAAGTGATTGATTTGGATGGCAGTGGTCTGCTGAGTCTAGAAGAATACAATTTCTTTGAGCAGAGAACCAGTGGAGAGAAATGTGATGAGGATGCGTGGGCTATCTGTAAAGAAAACTTCGACACTAAGAAAAATGAGTTAACTAGACAAGGTTTCTTGGAGCTTAACCTGATGGAGGCGAATGATCGCGAGGGAGACCCTAGTGACTTGTGGCTCACCCTGGAGGCCATGGGCTACAACCACAGCTTGGAGATGGTGGAGTCCTGTCCATTTGTCATTGATGTCTACTGTGAGGATGTCAAAGCAACTCTTCAGGCAGTTCATTTGGATTCTGGGGTGAAGATGTTGAATTCTGCTGTACAGAGATCCATCACGTCCAAAGCAGAGGCTAAAGCTCTGAAGGGCCATGAGAATGTGCTTGTTTACACATACAAAGGAGAGAGCAGGATTTCATCAGTCATTGCTAATAAGTCCAATCAGAAGGTGACGGTGCACATCAGCAATGAGCAAAGCAAAAACTTTGTGAGCAGCAGAGGCATGAGTGTGTTTGCAGTGGAGGTTCCTGCTAGAACTAAAATGGTTTGTCAGCACGTCATGGCTTTAAACGATCAACAGGAGTGGACTTACAACTGCACTGAGAGCATTATACCAAGTTTGTAAATGCTGCAGTTGTGACATTTATTATGAGGCAACAAAGAAAGTAGTAACATAATATTGTTTGCTTGTTATAACTATTGCAAACATTAATAATAgttttcagatttgtttattgTTCCTTTCAGCAAAATGCAATCatgattttcatttgtttttgtaaataaagcagtttatattttatttttatttgttttgcatttttattattttgttatgtgtttttaatgtaatattttttttggtttctgttaGCATTGTGCAAGTCGCTTCGAGAGATTGTGTGCACTCCTCTAATGAATTTGCGTAAGTTTCAAGTGAGTCAATtttaagaatagaatagaatgtagggtttaaatttaataaaaagtgaaaaGGTATGAGAGCGAGCTTT
>TCONS_00063990
GATTCATATTTTATGAATCGTAAAAATAGCGAGTCTGTGCCATGAGCCCAGAGACTGTAGTGTACACTATGCATTTTAAAAGATTatctaaaatgtataataaagtgAATAAATACCACTCTTGTCTGTTAAGAAGAGTTTCCTTTGTTTAAATAAGTAGAGCCCTGTATCTTAAAGCAGTTTACCTTACATCACAACACAATTGATTTATTTGGCTATTCTTAAAAGAAAGTTTTGAATTAGTCTTTAATAGCATTGCTTTCATCCAAATCCAAGTAAATAACTTCTAATCCAGCAGTTGTTTTTATAACATTATGTCTTGTCATACAGAAAACTTCGACACTAAGAAAAATGAGTTAACTAGACAAGGTTTCTTGGAGCTTAACCTGATGGAGGCGAATGATCGCGAGGGAGACCCTAGTGACTTGTGGCTCACCCTGGAGGCCATGGGCTACAACCACAGCTTGGAGATGGTGGAGTCCTGTCCATTTGTCATTGATGTCTACTGTGAGGATGTCAAAGCAACTCTTCAGGCAGTTCATTTGGATTCTGGGGTGAAGATGTTGAATTCTGCTGTACAGAGATCCATCACGTCCAAAGCAGAGGCTAAAGCTCTGAAGGGCCATGAGAATGTGCTTGTTTACACATACAAAGGAGAGAGCAGGATTTCATCAGTCATTGCTAATAAGTCCAATCAGAAGGTGACGGTGCACATCAGCAATGAGCAAAGCAAAAACTTTGTGAGCAGCAGAGGCATGAGTGTGTTTGCAGTGGAGGTTCCTGCTAGAACTAAAATGGT
>TCONS_00063991
GGAAGACGATGGATCGATTATTTCTCTCCAGTATCGCCTCCATGTTCCTCAAACTACCAGTGTCTACCTGACCATACAACCCCTCAACCTTAGCCCGATTCCTGACAAGCCTTCACCATGGATGTGTGTGGACACAGCTCTCTATGTGCTGACGGGAAACGAGACAAAAGAAGATTCAAACTTGGTTTGTTTTACCGAGTTAAGAGATAAGGAGAGGTTTTTGTGGAGGGGAGAGCTCAGCGCCGGCTCATATCTGCTTATGCCCTTCACCACCGGCTGCAGACTGAAGAGAATGCGGAAGAACAGCCCTAAAACTGCTCAACTAGTCAACCGCGTGCAGTCTGGAGAGCTGGAGCTAACCAAAGAGTTCAAGGCGGTGTTGTCTGACATCTTTGAAGTGATTGATTTGGATGGCAGTGGTCTGCTGAGTCTAGAAGAATACAATTTCTTTGAGCAGAGAACCAGTGGAGAGAAATGTGATGAGGATGCGTGGGCTATCTGTAAAGGTTTTTGTATAAATACACCCTGGATATAAAGTTAACACAATATAGAGTCACAATAGAGCCAGACGCTTTTAGCTTTGCATTAATCAAATGATACAACTAATTAATTAACTGtttcttaaaggggtagtttactcaaaaatgaaattttgctgttaatttactttaTGTTGGTGACTTATTTCTTGTTCTTTAGTTGACCTTTTAAAGAAGACTTTAAGCTAAAACAAAACAAGTCAACAGCTACTGGCACTTTA

Function

symbol description
efcab7 Predicted to enable calcium ion binding activity. Orthologous to human EFCAB7 (EF-hand calcium binding domain 7).

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04340 Hedgehog signaling pathway

ZFIN:

id description
ZDB-GENE-040625-115 Predicted to enable calcium ion binding activity. Orthologous to human EFCAB7 (EF-hand calcium binding domain 7).

Ensembl:

ensembl_id ENSDARG00000020279

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063988 False 2377 mRNA 0.42 13 32029231 32045983
TCONS_00063989 False 2333 mRNA 0.42 13 32029234 32045951
TCONS_00063990 False 799 lncRNA 0.40 3 32029913 32034640
TCONS_00063991 True 760 lncRNA 0.42 4 32035287 32037999

Neighbor

gene id symbol gene type direction distance location
XLOC_032936 pgm1 coding downstream 4006 32010183 ~ 32025225 (-)
XLOC_032934 ror1 coding downstream 41291 31772182 ~ 31987940 (-)
XLOC_032935 si:dkey-209n16.2 coding downstream 222886 31804665 ~ 31806345 (-)
XLOC_032933 NA coding downstream 279447 31745291 ~ 31749784 (-)
XLOC_032932 cachd1 coding downstream 289522 31590751 ~ 31739709 (-)
XLOC_032938 alg6 coding upstream 19111 32065094 ~ 32087111 (-)
XLOC_032939 foxd3 coding upstream 46049 32092032 ~ 32093830 (-)
XLOC_032940 NA coding upstream 149825 32195808 ~ 32196825 (-)
XLOC_032941 atg4c coding upstream 254035 32300018 ~ 32315494 (-)
XLOC_032942 angptl3 coding upstream 298214 32344197 ~ 32349153 (-)
XLOC_032927 CR847887.1 non-coding downstream 881976 31069530 ~ 31147255 (-)
XLOC_032920 NA non-coding downstream 1570216 30452287 ~ 30459015 (-)
XLOC_032919 FP236850.1 non-coding downstream 1807261 30221834 ~ 30221970 (-)
XLOC_032918 FP236850.2 non-coding downstream 1826194 30202921 ~ 30203037 (-)
XLOC_032944 NA non-coding upstream 369093 32415076 ~ 32416753 (-)
XLOC_032945 LO017955.2 non-coding upstream 528013 32573996 ~ 32592792 (-)
XLOC_032946 NA non-coding upstream 641019 32687002 ~ 32687386 (-)
XLOC_032952 NA non-coding upstream 1144599 33190582 ~ 33210388 (-)

Expression


Co-expression Network