XLOC_032938 (alg6)


Basic Information

Item Value
gene id XLOC_032938
gene name alg6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 32065094 ~ 32087111 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063992
ATGTTTCAGGAAGTGAATTTCAGCTGCTGCGGCTCTGCATGAAAGCATGAGAGATGTTACAGATTTATGAGTTTTAAATCAAAGGTCTTGAAGGCTACCAGACATGGAGAACTGGAGCCTTATTTCTCTTTGCGTCTTGCTGGGTTTAACGTCGAGATGGGCAGTGTCTTTTCACTCTTACTCAGGTGCAGGTAAGCCGCCAATGTTTGGGGATTACGAAGCGCAAAGACACTGGCAAGAATTGACTTACAATCTACCCGTTCATGAATGgtacttcAACACTACAAATAATGACTTGAATTACTGGGGTCTTGATTACCCTCCTCTAACAGCCTATCACAGTTTGGCATGTGCATATATAGCAAAGCTGTTCAATCCTGAATGGGTGGAGTTGCATGCATCCCGAGGCTATGAAAGCCACTCTCACAAGTTGTTCATGAGGGCAACGGTGCTTTTTGCAGATGCTTTGATCTACATTCCAGCAGTTTTGCTCTACTGCTTCTATTTTTGTGATGGATCTCCTAAACAAAAGGTTGCCACAGCTTTCTGCATCCTTATGTATCCAGGACTTATGCTGATAGACTATGGTCATTTTCAATATAACGGTGTGAGCCTGGGTCTGGCTCTGTGGGGGGTTTTAGGACTTGGTTTGGGCTGGGACCTGTTTGGTTCTGTGGCCTTTGTCTTGGCTCTCAATTACAAGCAAATGGAATTGTACCATGCGCTGCCTTTCTTTTGTTACCTCCTGGGAAAATGTGTCAAACACGGCTTAAATGGACAAGGATTTTTTCATTTGGTCAAGATCTCACTGACTGTACTGGTGACCTTTGCCCTTTGTTGGATGCCCTTTTTGTCAGACCCCAAACAACCTTTGCAAGTTCTTCATCGCCTTTTTCCTGTTGGTCGGGGCCTGTTTGAGGATAAAGTGGCAAACACATGGTGCAGCTTGAATGTGCTGATAAAGATCAAGACCCTGCTGTCCAGAGAGACTCAGCTGTTCCTCAGTTTTGCTCTTACTGTGTTGTTTGTCCTGCCTTCGTCTCTAAAACTGCTGTCCAAACCGACTCTCTGGCAGTTCAAGCTGGCTTTGGTGAACTCCTCCCTGGCTTTTTTCCTCTTCTCCTTCCAAGTCCACGAGAAATCCATCCTTCTAGCAGCCTTGCCAGTTTGCCTTGTCATCAACGAAATGCCTCTCATCGCTGTTTGGTTTCTGCTAACATCAACTTTCAGCATGCTGCCCCTGCTGCTAAAGGATGGTTTGCTGTTGCCGTACGTGGTGACCTCACTGGCGTTCCTCTTTCTGAGTCTGTATCTGCTCTCGGCTTTAGAGAGAAGTACGGATGAAGAGCTCAGGCTCGCCCCCTATCGCAAACTCACACAACACTTCCTGCCAAAGCTCAACCTCAGCCGGATCGTTAAATGGAAATTCTGGTTGTCACTGGTGGCCATGGCTGCTTTGAGCATTACGAGTGTTTGGTTGGAGCCTCCGGCCAAGTTGCCAGATCTGTTTCCGGTGCTGGTCTCTATCTTCTCCTTCCTACACTTTCTGGGCTTCGTAATTTATTTTAACCTAGTCCAGCTGATGGAGCCACAGAGAAGAAAGAATCAGAAGAAAACTAACTGAAACGTGCCTTGACATGTTGAAACTGGCCAAAATGATGGAGAAGGGAGAGGAGGACAATCGCTTTGGTTTGAATAGAACAGGGGGAATAGTTTGGGAAATTTCAGTTTCCCTCTAATGAGGTTTAGGAAACTTGTTTGAATTGGGAAGAGTGAGTCCAGTGAAGGGGGATACAATTTTGCCAGGAAGTCTCTCACTTACATGCCTTTAGTGACCAAATGAGTTAGTGGGGTATTGGTTTTGTGTAAGTGACCAAGGTGTCAGGCCATTATTTTCAGGAACAATTTTGATACGTCATTAAATGGTTTTGTATCAAATTAAAA
>TCONS_00063993
GCAATGTTTCAGGAAGTGAATTTCAGCTGCTGCGGCTCTGCATGAAAGCATGAGAGATGTTACAGATTTATGAGTTTTAAATCAAAGGTCTTGAAGGCTACCAGACATGGAGAACTGGAGCCTTATTTCTCTTTGCGTCTTGCTGGGTTTAACGTCGAGATGGGCAGTGTCTTTTCACTCTTACTCAGGTGCAGGTAAGCCGCCAATGTTTGGGGATTACGAAGCGCAAAGACACTGGCAAGAATTGACTTACAATCTACCCGTTCATGAATGgtacttcAACACTACAAATAATGACTTGAATTACTGGGGTCTTGATTACCCTCCTCTAACAGCCTATCACAGTTTGGCATGTGCATATATAGCAAAGCTGTTCAATCCTGAATGGGTGGAGTTGCATGCATCCCGAGGCTATGAAAGCCACTCTCACAAGTTGTTCATGAGGGCAACGGTGCTTTTTGCAGATGCTTTGATCTACATTCCAGCAGTTTTGCTCTACTGCTTCTATTTTTGTGATGGATCTCCTAAACAAAAGGTTGCCACAGCTTTCTGCATCCTTATGTATCCAGGACTTATGCTGATAGACTATGGTCATTTTCAATATAACGGTGTGAGCCTGGGTCTGGCTCTGTGGGGGGTTTTAGGACTTGGTTTGGGCTGGGACCTGTTTGGTTCTGTGGCCTTTGTCTTGGCTCTCAATTACAAGCAAATGGAATTGTACCATGCGCTGCCTTTCTTTTGTTACCTCCTGGGAAAATGTGTCAAACACGGCTTAAATGGACAAGGGTGAGTTTCTTGGTTTTTTGAATGAACACtggatttttttattgaatattgaTTTAAAGGAACAGTCCGCTCAAAAATTAACATGCTGTCATCAATTACAATCACATTGTGCCAAAATTATATAACTtcctgtcttctgttgaacaaaaaagaagatattttaataatgaatgttggaaaccagtagccattgacttccatagtatttcccCCTTCTATGGATTTCAGTGACTTCTGCTtgtcaacattctttaaaatatcttgttttgcactcaacagaaaaagaaacacacaaagGCTTGGACCCTCCTAAACTGTGAGTACATTTTGTTTTTGGGTGCATTCTtcctttaaattatatattaaaatagagtAAATGTAATTAACTCTGAcctcaagacaattctatacaagGTAATTAAGACAGACCTGGTGCAGAGACCTTGGAAGAGAAACATACATAGAACTGCAATATAGACCTGTCTTTTCTCATTCTGTTTCAACACACAAATATTTAGATAACTTCTTGGAAGAAAATATGAAAGGTAATTCCTgccaattgtaaataaatcaaataaacattagaaattaaaatgaaaaccatattaacaatttcattataaaatgctgtttgcaaaatatctgccaaaattgaaaatgaaatgaaatgtttatcTAATCTTACTGCATTTTATTCACTTAAACATCACTTATTCTAATAAAGAGATAGTTGGCCCAAAAATTATAATGATGTTCTCATCTAAAATTAAATTGCATTATTAATTACTTATCTTCAtgatcatcttcagaacacaaaattTGCAAATAATTACCAATTATTGTATTAAacagtaattaataacaataattttcatttttggggtgaattaaccCTTTAATTATGCATTTGCAGGCTAGTTGATAAGCTAACAGTGTCTTGTCTTGCATcattaagcaatgtttttttattaatattatcaaagGAATAATAagtttttttgattatttttttttttatttaaatctaagAAATGTGAATTATTGAAAAGCCCCCTTAATGGAAAACTGCCCATTGTTATTCtggaaaatgtataaaaaaatatgtttgtataccTAATAATCAAGTTAAGGGTACAGTGCAGTTGATAGTGTCATTTGTCTATCTGCCTGATTTGTGTTAAATaatgacaatacaacaaacaGTTGATATCTATTGTTCTGCACT

Function

symbol description
alg6 Predicted to enable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase activity. Predicted to be involved in oligosaccharide-lipid intermediate biosynthetic process and protein N-linked glycosylation. Predicted to act upstream of or within dolichol-linked oligosaccharide biosynthetic process. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Ic. Orthologous to human ALG6 (ALG6 alpha-1,3-glucosyltransferase).

GO:

id name namespace
GO:0006487 protein N-linked glycosylation biological_process
GO:0006488 dolichol-linked oligosaccharide biosynthetic process biological_process
GO:0006490 oligosaccharide-lipid intermediate biosynthetic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046527 glucosyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0016758 transferase activity, transferring hexosyl groups molecular_function
GO:0042281 dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase activity molecular_function

KEGG:

id description
ko00510 N-Glycan biosynthesis
ko01003 Glycosyltransferases

ZFIN:

id description
ZDB-GENE-040808-45 Predicted to enable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase activity. Predicted to be involved in oligosaccharide-lipid intermediate biosynthetic process and protein N-linked glycosylation. Predicted to act upstream of or within dolichol-linked oligosaccharide biosynthetic process. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Ic. Orthologous to human ALG6 (ALG6 alpha-1,3-glucosyltransferase).

Ensembl:

ensembl_id ENSDARG00000017617

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063992 False 1944 mRNA 0.45 14 32065094 32087108
TCONS_00063993 True 2011 mRNA 0.35 7 32083531 32087111

Neighbor

gene id symbol gene type direction distance location
XLOC_032937 efcab7 coding downstream 19111 32029231 ~ 32045983 (-)
XLOC_032936 pgm1 coding downstream 39869 32010183 ~ 32025225 (-)
XLOC_032934 ror1 coding downstream 77154 31772182 ~ 31987940 (-)
XLOC_032935 si:dkey-209n16.2 coding downstream 258749 31804665 ~ 31806345 (-)
XLOC_032933 NA coding downstream 315310 31745291 ~ 31749784 (-)
XLOC_032939 foxd3 coding upstream 4921 32092032 ~ 32093830 (-)
XLOC_032940 NA coding upstream 108697 32195808 ~ 32196825 (-)
XLOC_032941 atg4c coding upstream 212907 32300018 ~ 32315494 (-)
XLOC_032942 angptl3 coding upstream 257086 32344197 ~ 32349153 (-)
XLOC_032943 usp1 coding upstream 307391 32394502 ~ 32411727 (-)
XLOC_032927 CR847887.1 non-coding downstream 917839 31069530 ~ 31147255 (-)
XLOC_032920 NA non-coding downstream 1606079 30452287 ~ 30459015 (-)
XLOC_032919 FP236850.1 non-coding downstream 1843124 30221834 ~ 30221970 (-)
XLOC_032918 FP236850.2 non-coding downstream 1862057 30202921 ~ 30203037 (-)
XLOC_032944 NA non-coding upstream 327965 32415076 ~ 32416753 (-)
XLOC_032945 LO017955.2 non-coding upstream 486885 32573996 ~ 32592792 (-)
XLOC_032946 NA non-coding upstream 599891 32687002 ~ 32687386 (-)
XLOC_032952 NA non-coding upstream 1103471 33190582 ~ 33210388 (-)

Expression


Co-expression Network