XLOC_032940


Basic Information

Item Value
gene id XLOC_032940
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 32195808 ~ 32196825 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063995
GTCGAGCTTTAATCTGGCCTCGCCTGACAAGAACCATCCTTTTCGGTGAAGGGTAAGACCACTTAGAGAAAGGCCAATAAGCTCCAGCACAGTGCAGGCTGACGCGGGTGATTTGTCAGCCCCTCGCCGCAGCGCTGGTCACCCCAATGGATTTATCTCAAGCACCACCGCCACGCCAGAAGAATAACAAACGCAAGGGGAGATGGGATGAAAATGTTTCAGGGAGAGGGAGAAAAGGTGTCATTGGGAAGATCTGGGATGCACAGTGAAATTTCTCCTGGGCCGCGGAGCATTGAAGGTGAGGAGCAATATCAAGGAGAGGCAATCACCTCCAGAGCGAAACCCTAACCCCGCTCTCCTTCAGCACCTCCATTTTCTCTGTCTCTACATCCCTCTTTCAATTTAAATTCCCTCCGCCTGCGCTCTCGGTCTCACCTTCTGCGAACACGTGTTTGACAATCATTCCTTCCCCAAGCCCCTTCATTCCTCTATTTGTCAATTTATGAATAAGGAAATGAACTTCAGAAGCCTGTATATCTGATCAGCTCTTGTTTGTTTCTATAACTCTATCTTTATCATGTCTATTTCTTTTAATATCAGGATTTTTGTGATATGCAGAATCCTATTTCATTAATAAACCTATTTGAAAAGCAGGATATATGGGTCAAAGACATTTTGGTGTCtgtatcaaattaaatttactgAAGTGATTTTATTTACGGCACATAGCAAAAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063995 True 736 lncRNA 0.44 2 32195808 32196825
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_032939 foxd3 coding downstream 101978 32092032 ~ 32093830 (-)
XLOC_032938 alg6 coding downstream 108697 32065094 ~ 32087111 (-)
XLOC_032937 efcab7 coding downstream 149825 32029231 ~ 32045983 (-)
XLOC_032936 pgm1 coding downstream 170583 32010183 ~ 32025225 (-)
XLOC_032934 ror1 coding downstream 207868 31772182 ~ 31987940 (-)
XLOC_032941 atg4c coding upstream 103193 32300018 ~ 32315494 (-)
XLOC_032942 angptl3 coding upstream 147372 32344197 ~ 32349153 (-)
XLOC_032943 usp1 coding upstream 197677 32394502 ~ 32411727 (-)
XLOC_032944 NA coding upstream 218251 32415076 ~ 32416753 (-)
XLOC_032945 LO017955.2 coding upstream 377171 32573996 ~ 32592792 (-)
XLOC_032933 NA non-coding downstream 446024 31745291 ~ 31749784 (-)
XLOC_032927 CR847887.1 non-coding downstream 1048553 31069530 ~ 31147255 (-)
XLOC_032920 NA non-coding downstream 1736793 30452287 ~ 30459015 (-)
XLOC_032919 FP236850.1 non-coding downstream 1973838 30221834 ~ 30221970 (-)
XLOC_032918 FP236850.2 non-coding downstream 1992771 30202921 ~ 30203037 (-)
XLOC_032946 NA non-coding upstream 490177 32687002 ~ 32687386 (-)
XLOC_032952 NA non-coding upstream 993757 33190582 ~ 33210388 (-)
XLOC_032953 CR933860.1 non-coding upstream 1246509 33443334 ~ 33443455 (-)

Expression

Expression of XLOC_032940 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3.
End of interactive chart.

Co-expression Network