G1393945 (LOC106566749)


Basic Information

Item Value
gene id G1393945
gene name LOC106566749
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 58191744 ~ 58195357 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1591818
GTACATTGATAAGATAATAAATATCTTAAATAGAGATTTGATATGGGGAAGGGGTATATAATTAACTTTTAGGCTCTGGCTGATATCATGTGACTCATGCCGGTGAAGAACGACCGCTCTCTCTCAGTCATCAGCTCAAAGTGGAGAGGCTGCTGGCAGAAGTTACACTCCCCTGACGAGTGAGGTTTTAGCTCCAGACCCACCTCCTTCCAGGCCTTCACCAGACGTTCTGTGGCCAGGAACACATTCACATGTAATGGATCACATTTTAGTTGtactttattaaaaaaaaataacatacaAGAAACACTATAGCAGATTCTTACTTGAGTTCTGAATGCAGTCAGCATGGACAGATTTATCCCACCAAATGGAGGCCATTTTAGCAACATTGAATAAGTTAAAATCATACAAATCCAAAACTATTACATGCTAAAAACCACAAAATCTCATTGGGGCGTGTGCTTACCGACAAAGTActgcatcatctggggagtgtggtgtggggtgggggCGATGCGGAGGACCTCCTCTCCCTGAGCCACAGTGGGGTAGTTGATGGCCTGCACATAGATGTAGTAGCGAGACATCATGATGTCACACACCTCTGTGTTCTTGGCTGCGTCCGCCACCTGCAACAAGGGGTCAAAGATGAATCCTCAGGTGATAAATTAGAAAACATTTTAAGCATGAAATATAACAGCCACTGTTGATAGAATGTCCCTTCTCTTGTTTCCATGGTTTAAAACTtgattaacttcttggtgacaggggggcagtattgagtagcttggatgaataaggtgcccagagtaaactgcctgctactctgtcccagatgctaatatatgcatattattagtagtattggatataaaacactgacgtttctaaaactgtttgaatgatgtctgtgagtataacatgagtataacagaactcatatggcaggcaaaaatccaaccaggaagtgggaaatctgaggcttgtagttttttaactcagcccctattgtagatacagtgggatggatattggttatgttgcacttcttaaggattccactagatgtcgacagtctttagaactttgtttgaggcttctactgtgacgTGGCACCGAATGAAAGgaatgagccaggtgtctggcagagtgccacaggctctgaggcacggtcacgagagagttggctcttgttccattgcttttctacagacacaggaattctccggttggaacattattgaagatttatgatgaaaacatcctaaagattgattctatacttagtttgacaagtttctacgggctgtaacggaacaTTTTGAACTTTTTGTCCGAAGTTCGGCgcgacctgaacgcgcttttggatttgtttaccaaacgccttaacaaaagaagctatttggacataaatggacattatcgaacaaaacaaacatttattgtggaactgcgattcctgggagtgcattctgatgaagatcaaaggtaagtgaatatttatggtgttctctctaacttctgttgactccaaaatggcggatatttctctggctggatcGTGCTATGagtgccgttctcagattatgctttttccgtaaagtttttttgaaatctgacacagtggttgcattaaggagaagtctgtctttaattctgtgaataacaattgtatcttttatcaatgtttattatgagtatttctgcaaaatcaccggatgttttggaatcaaaacattactgcacgtaatgcaccaatgtaaactgagatttttggatataaatatcacattatcgaacaaaacatacatgtattgtgtaacatgatgtcctatgagtgtcatctgatgaagatcatcaaaggttagtgattcattttatctatatttctgctttttgtgactcctatctttggctggaaaaatggctgtgtgtttttctgACTTGGCAAGGACTTAAGCAGAACATATGATTATTTTTTGAAATCCGACACGATTGGTAGATTAACacgatgtttatctttcatttgctgtatttgacttgttaatgtgtgaaagttacatatttctaaaaaaatatttttgaatttcgcgcactaccttttcagcggaatgttgtcgatcAGTTCCACTAGCGGAAcacctgcgctagaaaggttatggataagtatatctctaattcaaTGTATAACAtgtgtattttcatcaacatctatgagtatttctgtaaatagatgtggctctctgcacaatcactgcatgttttagaactactgaacgtaacgcgccaatgtaaaatgagattttttttaatataaatatgcactttatcgaacaaaacatacatgtattgtgtaacatgatgtcctatgagtgtcatctgatgaagatcaaaggtttgtgattaattttctctctatttgtgctttttgtgactcctctctttggctggaaaaatggctgtgtttttctgtgagttggtggtgacctaacaatcgtttgtggtgctttcgctgtaaagcatttttgaaatcagacactgtcgctggattaacgagaattgtatcttttaaaatggtgtaaaatacttgtatgcttgaggaatttgaattatgagatttttgttttgaatttggcgccctgcactttcactggctgttggcgaggtgggacgctgccgtcccacatatcccagagaggttttaacagGCCTGTCTTACACGGACAGGGATGATGTGGCTGGGGCAGTAGACAACGGGCAGGCCCGAATCCATCAGCATCTGGCGAAGCAGCTTGACGTTCCTCTGGTGTTTCCTGCGCAGCACACGGCCCTCCTCCCCCTTCAGGGTGTGGATGGACTCCCGGGCCCCAGCCAGCAGCATGGGTGGCAGGGAGGTAGTGAAAATGAAGCCTGCTGCGTAGGAGCGCACCGTGTCCACCAGGGCATTGGTACCAGCGATGTAGCCGCCCACACAGCCAAATGCCTT

Function

NR:

description
5-aminolevulinate synthase, nonspecific, mitochondrial-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1591818 True 2989 lncRNA 0.41 2 58191744 58195357

Neighbor

gene id symbol gene type direction distance location
LOC110491122 LOC106566746 coding downstream 29664 58105100 ~ 58162080 (-)
LOC110492403 LOC106566745 coding downstream 94008 58093542 ~ 58097736 (-)
LOC118939560 NA coding downstream 113311 58073907 ~ 58078433 (-)
LOC118939561 NA coding downstream 120993 58070188 ~ 58070751 (-)
LOC110492401 LOC106566743 coding downstream 191493 57965807 ~ 58000251 (-)
LOC100136178 LOC100136178 coding upstream 33704 58229061 ~ 58235899 (-)
LOC110492410 LOC106566756 coding upstream 107154 58302511 ~ 58315644 (-)
LOC110492413 LOC106566757 coding upstream 171362 58366719 ~ 58394501 (-)
LOC110492417 LOC106566761 coding upstream 227547 58422904 ~ 58667831 (-)
LOC110491123 LOC106566759 coding upstream 480381 58675738 ~ 58730339 (-)
G1393929 NA non-coding downstream 22118 58168843 ~ 58169626 (-)
G1393920 NA non-coding downstream 41850 58149598 ~ 58149894 (-)
G1393918 NA non-coding downstream 45684 58145701 ~ 58146060 (-)
G1393917 NA non-coding downstream 48766 58142770 ~ 58142978 (-)
G1393947 NA non-coding upstream 3162 58198519 ~ 58198778 (-)
G1393955 NA non-coding upstream 17168 58212525 ~ 58212737 (-)
G1393979 NA non-coding upstream 54785 58250142 ~ 58250445 (-)
G1393983 NA non-coding upstream 59485 58254842 ~ 58255061 (-)
G1393995 LOC106571908 non-coding upstream 72422 58267779 ~ 58268135 (-)
LOC110492397 NA other downstream 298462 57887491 ~ 57893319 (-)
LOC110492394 psma7 other downstream 337958 57849674 ~ 57853907 (-)
G1391869 NA other downstream 1650815 56538592 ~ 56540929 (-)
G1391796 LOC100286403 other downstream 1754465 56424272 ~ 56437279 (-)
LOC110492371 adcy6 other downstream 1898272 56240763 ~ 56293503 (-)
G1393949 LOC105029132 other upstream 9402 58204759 ~ 58207165 (-)
G1393997 LOC106566752 other upstream 78671 58274028 ~ 58278427 (-)
G1394067 NA other upstream 229101 58424458 ~ 58428113 (-)
G1394341 NA other upstream 551513 58746870 ~ 58747299 (-)

Expression


Co-expression Network