Gene
RNA
| Item | Value |
|---|---|
| gene id | G1393500 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048580.1 |
| NCBI id | CM023234.2 |
| chromosome length | 78541548 |
| location | 58219061 ~ 58219294 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| uncharacterized protein LOC110486979 isoform X3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1591326 | True | 234 | lncRNA | 0.55 | 1 | 58219061 | 58219294 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110492406 | LOC106566750 | coding | upstream | 11798 | 58199208 ~ 58207263 (+) |
| LOC110492405 | LOC106566749 | coding | upstream | 23646 | 58186418 ~ 58195415 (+) |
| spo11 | LOC106566748 | coding | upstream | 34853 | 58174548 ~ 58184208 (+) |
| LOC110492402 | LOC106566744 | coding | upstream | 130805 | 58040555 ~ 58088256 (+) |
| LOC118936470 | NA | coding | upstream | 254878 | 57954916 ~ 57964183 (+) |
| LOC110492407 | LOC106566752 | coding | downstream | 44071 | 58263365 ~ 58278453 (+) |
| LOC110492411 | LOC106566755 | coding | downstream | 98737 | 58318031 ~ 58335164 (+) |
| LOC110492412 | LOC106566754 | coding | downstream | 128159 | 58347453 ~ 58363312 (+) |
| LOC110492416 | cnbp | coding | downstream | 176167 | 58395461 ~ 58399157 (+) |
| LOC110492415 | LOC106566758 | coding | downstream | 180335 | 58399629 ~ 58406067 (+) |
| G1393496 | NA | non-coding | upstream | 3226 | 58215589 ~ 58215835 (+) |
| G1393453 | NA | non-coding | upstream | 49565 | 58168811 ~ 58169496 (+) |
| G1393448 | LOC106566746 | non-coding | upstream | 57056 | 58161320 ~ 58162005 (+) |
| G1393440 | NA | non-coding | upstream | 71874 | 58146962 ~ 58147187 (+) |
| G1393438 | NA | non-coding | upstream | 72484 | 58145664 ~ 58146577 (+) |
| G1393509 | NA | non-coding | downstream | 19557 | 58238851 ~ 58239360 (+) |
| G1393517 | NA | non-coding | downstream | 30487 | 58249781 ~ 58250139 (+) |
| G1393527 | NA | non-coding | downstream | 62896 | 58282190 ~ 58282472 (+) |
| G1393534 | NA | non-coding | downstream | 74866 | 58294160 ~ 58294389 (+) |
| G1393554 | NA | non-coding | downstream | 159930 | 58379224 ~ 58380701 (+) |
| G1392617 | NA | other | upstream | 816531 | 57401485 ~ 57402530 (+) |
| G1392616 | NA | other | upstream | 821884 | 57396940 ~ 57397177 (+) |
| G1392601 | NA | other | upstream | 852544 | 57365951 ~ 57366517 (+) |
| LOC118939462 | LOC106566730 | other | upstream | 1428380 | 56779988 ~ 56790929 (+) |
| G1391254 | NA | other | upstream | 1972188 | 56246515 ~ 56247620 (+) |
| G1393570 | LOC106566761 | other | downstream | 200092 | 58419386 ~ 58423502 (+) |
| G1393647 | LOC106613431 | other | downstream | 346842 | 58566136 ~ 58566794 (+) |
| LOC110492427 | brpf1 | other | downstream | 1059825 | 59278960 ~ 59290653 (+) |
| G1394888 | NA | other | downstream | 1086280 | 59305574 ~ 59306035 (+) |
| G1395932 | NA | other | downstream | 2101509 | 60320803 ~ 60336069 (+) |
