XLOC_032941 (atg4c)


Basic Information

Item Value
gene id XLOC_032941
gene name atg4c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 32300018 ~ 32315494 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063996
tatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaactataatattaACTTATATATGTGCATAACAGCAGAGCCATCAAATGTAAtaagattgtttttttcttttttttttcttttttttggtcaCCAAATTCTTGTACTCTCTTTTAATTCCCTAAAACCACTGCGTTGTCCACATTCTTTTTGGTGATGTTTAGTCTCCTCAGCTTCTCACTGTagcaactgattttttttttttacttaaaaatgaccAGTAACAGAAATACAGCAGAGGGTCATTAAATATGATAAGGCTATTTTATAATCAAATAATTCTGATACTCCTTATTTTTTACTCACACCGGCCCAGAAGCCACATGACCACATACCACAAGCTTCTTTTAGTATTGTTACAAACCCGTAATAAGCACCAACATGTGTCGACCAAAGGTTTTTTAACCAGGCCTTTGAAATATCTACATTCAAAAGTACGCGTCTGAAGCATAGGTCTGAAGGGAGAATGGGAAATACCGCGAGACCGAACGAGATCGCCACTTCCTCAAAATGTAAACAGAAATAGCTGCAGTGGGTTCTTCAGTATAACAAGACATAAACTTAGTCTGTTACGTGCTGTGATGGGTTTTGCTCCGTGGCTGAAAAAATGGAGACTAAAGGGACCGACGAGGTGGAGACACTGAAGTCCAAATTCATGTCAGCATGGCACAGTGTGAAATACAGCTGGGCTCTAAagtcaaaaactgcttttagccGTAATTCTCCTGTATTCTTGTTGGGAAAATGCTACCACTTCAAGGTTGTGGATGATGAAAACCCTACTGAGAGCACAGCTGAGGCATTAGATGACGATGTTGTCACAGGCAATGTTGATGAATTTCGAAAGGATTTCACCTCTCGAGTTTGGCTGACCTATCGAGAAGAGTTTCCTGCTCTTCCGGGCTCCAGCTTCACTTCAGACTGTGGCTGGGGTTGTACACTCCGAGCGGGGCAGATGATATTGGCACAGGCACTCTTGCTTCACATCTTGGGTAGAGACTGGAAGTGGTCAGAAGCATTGTCCCTGGAGCCCTTGGATACAGAGACGTGGACCAGCAGTGCCGCTCGGAGACTCGTGGCCACATTAGAGGCTTCCATTCAGGGGGAACGAGCACAAGCCTCTCAGCCTCTCTGTCCTGTTCAAGGAGAAGCTGAGGAGGCCGACTCTTACCTGAAAGAGACATATCATCGTACCATTGTATCCTGGTTTGGGGATGGACCCTCAGCACAGCTGGGCATCTACAAATTAGTGGAGCTAGGAATGACTTCCGGAAAACAGGCAGGAGATTGGTATGGCCCAGCAGTGGTAGCACACATACTGAGaaaaGCTGTTGATGAGGCAGTTGATGCAATGCTGAAAGGCATTCGTGTTTATGTAGCACAGGACTGCACAGTGTACAGTGCTGATGTTATTGATAGCCATTCAACGCGGACAGAAAGCCACAGTGATCCTCAGGGACTCGATTCTGGAGCTTCACCTGATAGTAGAGCTGTTGTTATCCTCATTCCTGTGAGACTGGGTGGAGAGAAGATCAACCCAGAATACTTAAACTTTGTCAAGAGCATTTTAAGCTTAGAGTACTGTATCGGCATCATTGGTGGAAAACCGAAACAGGCTTACTATTTTGTTGGATTTCAAGATGACAGCTTGATTTACATGGATCCTCATTACTGTCAGTCTTTTGTGGATGTCAGCACAAGCGATTTCCCTCTGCAGTCGTTTCATTGCCCATCACCAAAGAAAATGTCTTTCAGTAAAATGGACCCGAGCTGTACGATTGGATTCTACTCAAAAAGTGTTGAACACTTTGAAAAAATTGCCAATGAACTGTCAAAGATTCTGCAACCCTCGTCGAAAGAGAAGTACCCTGCATTCACCATAATGAAAGGCCATGGGAAGGATTATGAACTTTCGATTGCTGTAGAAAAGCGAGAATGGCCTTTCATCAGGGACGCAAGGAAAGCAGGCACAACATCAGGAGACTTTGTGCTGCTTTAATGCTTAAAACTGGTAACCAAAAAAaaaggacATTTTACAAAAATCTACAAGCAGTGCCTGCTCTAGAATCACAGATTTTAGACCATTTAACTGAACACTGATACTGATGCGAACACCTCTGGATCTTGCAAGCAAAGTTGAACACGGAAATTACCCTGCAAACATTTCAGCATGTTCATTTACTCTAATAGATACCGGGGgtcaatatgtttatttttttaacaaggaGTTCTTTATGTTGTTAGGTACATGTAGATAactattttttaaactaaaaatcaAATGTATAGTCTCATTTTTGAAACACATAAATGAAAtcacagaatttacattttattttggtatgtTTTATGTTACATTAACTGAAGGTATAACGTGCCTTTATAAGTGAGTAGAAAACACTGTATAGCATATAACTAAATCAGAAcctaattcatttttaaatgatatttagcAGTGGACATTAAAAAGCTGCTTCTACcatatttttatgaaaaatttTAAGAATTGAGCATTGATTTGTCCAGAAACTGTTTGATATTACATAAGTTAATTTacaattacatttagtcatttagcagatgcttttgttcaaagtgacttacaattgagagggcattcagcgattcaacaagaagaagcAATACAAAAAATAAGTGCTAATTATACACAGGTACTGTTaatgctcagagaattaagtgcttgGCTTAGAAAGGATGCGTGTGCTTTTTAATAGAAACAAAACTGTTTCTTCAGGTGGTTTATGAAACCCACTCACCTTCGAAAAAGCATTTTttagagatatggagtgattgtaagaaagtgcaAGACTGGTGCAAGTGTTGGTTAGTGAGAGATGGGTGTGTTTTCTgttggtggtttgtcaagcccactcacctgtgtaaagcACATTTAGTATTCTATAATGTTCAGAGGTTGCCGTGTCAATTAATGTCAGTTAACAACATTACTCGTATAATGCCGATATGTGAAACAATAGTTTCAAAACTGCAGAgatctttttagtttttttggagcttactttatttttttatggtgtAATGGAAATCATAAATTAGGATGAATGgagtaatttattattaaactatgCCTTATTTAATTAATAGGCATCTATTTAATAACATTGTCAATGTGACTGTATTGTACTGCAAATAATATCTTGCTTATTTGTATAGAAACACTTTTGAACCAAAGTACTGAGCATTGAACAGAACGCCAGTGAAGTGAATAACCACAATCATtttgtgtttgttaattaatttcaCCGTTTGCCAGTTTTAAGTGTTTGCAAATTACCGCGATGTATTTCAGTGTCATACTTCTGTTGCACAATGAATATTTCAGTTTAATAACTGTCGATTCAGAAATGTACAATAAAGCTAACATGACTAAAAACAACACTTTTAGTTTGTACTTGATCTTGCATCCTTTAATGACCAGCACAAATGTGTTATTGAGCTATTTTCGATCTATTAACTCATCTTTCCCAGCAAATGTACATGACATGCATTTCGCCAAATGGAACAAATCTGTATCTGGCGATTACGCCATTTTTCTGGGAGAAAGAAAATATCTTTGTGTTGGGCTCAATGTTGCCATGGTCAATTCCTGTTTCTGTTCCGTTTGAGCAATGCTTGTGCTATTTTCATGTTAAATACAAATTCTTATATTAATAAGGTCATAACCTTCAATTATGGGGTCCGGTTAGGGGAACAAGTTACCCTTCTGTGAGACCAAGCAGAATAAATCCTCGCCTGTCTCAGCACTGGATGTCGTGAAGACTGAAGCAGCGAAGCACAATACGCCTATCGTCTCAGTGTTTTCCAGTGTCTGTGATCAGTAAATTCATGCTGGGCTGAATTTAGGAAACGAGGCATTGAGGAAAGGAAGTTTGTGACATTAAGGGGTGAAGCAACATGCCAGCCTTTCTGTCAGTGTTACATGAAAGGGGGCTTGTGCTGGAAGGCATGAC
>TCONS_00063997
GCCACTTCCTCAAAATGTAAACAGAAATAGCTGCAGTGGGTTCTTCAGTATAACAAGACATGTAAGCAGAAACTTAGTCTGTTACGTGCTGTGATGGGTTTTGCTCCGTGGCTGAAAAAATGGAGACTAAAGGGACCGACGAGGTGGAGACACTGAAGTCCAAATTCATGTCAGCATGGCACAGTGTGAAATACAGCTGGGCTCTAAagtcaaaaactgcttttagccGTAATTCTCCTGTATTCTTGTTGGGAAAATGCTACCACTTCAAGGTTGTGGATGATGAAAACCCTACTGAGAGCACAGCTGAGGCATTAGATGACGATGTTGTCACAGGCAATGTTGATGAATTTCGAAAGGATTTCACCTCTCGAGTTTGGCTGACCTATCGAGAAGAGTTTCCTGCTCTTCCGGGCTCCAGCTTCACTTCAGACTGTGGCTGGGGTTGTACACTCCGAGCGGGGCAGATGATATTGGCACAGGCACTCTTGCTTCACATCTTGGGTAGAGACTGGAAGTGGTCAGAAGCATTGTCCCTGGAGCCCTTGGATACAGAGACGTGGACCAGCAGTGCCGCTCGGAGACTCGTGGCCACATTAGAGGCTTCCATTCAGGGGGAACGAGCACAAGCCTCTCAGCCTCTCTGTCCTGTTCAAGGAGAAGCTGAGGAGGCCGACTCTTACCTGAAAGAGACATATCATCGTACCATTGTATCCTGGTTTGGGGATGGACCCTCAGCACAGCTGGGCATCTACAAATTAGTGGAGCTAGGAATGACTTCCGGAAAACAGGCAGGAGATTGGTATGGCCCAGCAGTGGTAGCACACATACTGAGaaaaGCTGTTGATGAGGCAGTTGATGCAATGCTGAAAGGCATTCGTGTTTATGTAGCACAGGACTGCACAGTGTACAGTGCTGATGTTATTGATAGCCATTCAACGCGGACAGAAAGCCACAGTGATCCTCAGGGACTCGATTCTGGAGCTTCACCTGATAGTAGAGCTGTTGTTATCCTCATTCCTGTGAGACTGGGTGGAGAGAAGATCAACCCAGAATACTTAAACTTTGTCAAGAGCATTTTAAGCTTAGAGTACTGTATCGGCATCATTGGTGGAAAACCGAAACAGGCTTACTATTTTGTTGGATTTCAAGATGACAGCTTGATTTACATGGATCCTCATTACTGTCAGTCTTTTGTGGATGTCAGCACAAGCGATTTCCCTCTGCAGTCGTTTCATTGCCCATCACCAAAGAAAATGTCTTTCAGTAAAATGGACCCGAGCTGTACGATTGGATTCTACTCAAAAAGTGTTGAACACTTTGAAAAAATTGCCAATGAACTGTCAAAGATTCTGCAACCCTCGTCGAAAGAGAAGTACCCTGCATTCACCATAATGAAAGGCCATGGGAAGGATTATGAACTTTCGATTGCTGTAGAAAAGCGAGAATGGCCTTTCATCAGGGACGCAAGGAAAGCAGGCACAACATCAGGAGACTTTGTGCTGCTTTAATGCTTAAAACTGGTAACCAAAAAAGCAAGTGATACACCATAAATCAGAACTGCATGGGTCTAAACTATTAGACTCCtgttctcatgtttttttttttttttttagaaaggacATTTTACAAAAATCTACAAGCAGTGCCTGCTCTAGAATCACAGATTTTAGACCATTTAACTGAACACTGATACTGATGCGAACACCTCTGGATCTTGCAAGCAAAGTTGAACACGGAAATTACCCTGCAAACATTTCAGCATGTTCATTTACTCTAATAGATACCGGGGgtcaatatgtttatttttttaacaaggaGTTCTTTATGTTGTTAGGTACATGTAGATAactattttttaaactaaaaatcaAATGTATAGTCTCATTTTTGAAACACATAAATGAAAtcacagaatttacattttattttggtatgtTTTATGTTACATTAACTGAAGGTATAACGTGCCTTTATAAGTGAGTAGAAAACACTGTATAGCATATAACTAAATCAGAAcctaattcatttttaaatgatatttagcAGTGGACATTAAAAAGCTGCTTCTACcatatttttatgaaaaatttTAAGAATTGAGCATTGATTTGTCCAGAAACTGTTTGATATTACATAAGTTAATTTacaattacatttagtcatttagcagatgcttttgttcaaagtgacttacaattgagagggcattcagcgattcaacaagaagaagcAATACAAAAAATAAGTGCTAATTATACACAGGTACTGTTaatgctcagagaattaagtgcttgGCTTAGAAAGGATGCGTGTGCTTTTTAATAGAAACAAAACTGTTTCTTCAGGTGGTTTATGAAACCCACTCACCTTCGAAAAAGCATTTTttagagatatggagtgattgtaagaaagtgcaAGACTGGTGCAAGTGTTGGTTAGTGAGAGATGGGTGTGTTTTCTgttggtggtttgtcaagcccactcacctgtgtaaagcACATTTAGTATTCTATAATGTTCAGAGGTTGCCGTGTCAATTAATGTCAGTTAACAACATTACTCGTATAATGCCGATATGTGAAACAATAGTTTCAAAACTGCAGAgatctttttagtttttttggagcttactttatttttttatggtgtAATGGAAATCATAAATTAGGATGAATGgagtaatttattattaaactatgCCTTATTTAATTAATAGGCATCTATTTAATAACATTGTCAATGTGACTGTATTGTACTGCAAATAATATCTTGCTTATTTGTATAGAAACACTTTTGAACCAAAGTACTGAGCATTGAACAGAACGCCAGTGAAGTGAATAACCACAATCATtttgtgtttgttaattaatttcaCCGTTTGCCAGTTTTAAGTGTTTGCAAATTACCGCGATGTATTTCAGTGTCATACTTCTGTTGCACAATGAATATTTCAGTTTAATAACTGTCGATTCAGAAATGTACAATAAAGCTAACATGACTAAAAACAA
>TCONS_00063998
GTTCTTCAGTATAACAAGACATGTAAGCAGGCTGGGCTCTAAagtcaaaaactgcttttagccGTAATTCTCCTGTATTCTTGTTGGGAAAATGCTACCACTTCAAGGTTGTGGATGATGAAAACCCTACTGAGAGCACAGCTGAGGCATTAGATGACGATGTTGTCACAGGCAATGTTGATGAATTTCGAAAGGATTTCACCTCTCGAGTTTGGCTGACCTATCGAGAAGAGTTTCCTGCTCTTCCGGGCTCCAGCTTCACTTCAGACTGTGGCTGGGGTTGTACACTCCGAGCGGGGCAGATGATATTGGCACAGGCACTCTTGCTTCACATCTTGGGTAGAGACTGGAAGTGGTCAGAAGCATTGTCCCTGGAGCCCTTGGATACAGAGACGTGGACCAGCAGTGCCGCTCGGAGACTCGTGGCCACATTAGAGGCTTCCATTCAGGGGGAACGAGCACAAGCCTCTCAGCCTCTCTGTCCTGTTCAAGGAGAAGCTGAGGAGGCCGACTCTTACCTGAAAGAGACATATCATCGTACCATTGTATCCTGGTTTGGGGATGGACCCTCAGCACAGCTGGGCATCTACAAATTAGTGGAGCTAGGAATGACTTCCGGAAAACAGGCAGGAGATTGGTATGGCCCAGCAGTGGTAGCACACATACTGAGaaaaGCTGTTGATGAGGCAGTTGATGCAATGCTGAAAGGCATTCGTGTTTATGTAGCACAGGAC

Function

symbol description
atg4c Predicted to enable cysteine-type endopeptidase activity. Predicted to act upstream of or within autophagy; protein transport; and proteolysis. Predicted to be located in cytoplasm. Orthologous to human ATG4C (autophagy related 4C cysteine peptidase).

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0015031 protein transport biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040625-84 Predicted to enable cysteine-type endopeptidase activity. Predicted to act upstream of or within autophagy; protein transport; and proteolysis. Predicted to be located in cytoplasm. Orthologous to human ATG4C (autophagy related 4C cysteine peptidase).

Ensembl:

ensembl_id ENSDARG00000044373

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063996 False 4077 mRNA 0.38 12 32300018 32315494
TCONS_00063997 False 3011 mRNA 0.39 11 32300592 32314913
TCONS_00063998 True 734 processed_transcript 0.50 5 32309688 32314874

Neighbor

gene id symbol gene type direction distance location
XLOC_032940 NA coding downstream 103193 32195808 ~ 32196825 (-)
XLOC_032939 foxd3 coding downstream 206188 32092032 ~ 32093830 (-)
XLOC_032938 alg6 coding downstream 212907 32065094 ~ 32087111 (-)
XLOC_032937 efcab7 coding downstream 254035 32029231 ~ 32045983 (-)
XLOC_032936 pgm1 coding downstream 274793 32010183 ~ 32025225 (-)
XLOC_032942 angptl3 coding upstream 28703 32344197 ~ 32349153 (-)
XLOC_032943 usp1 coding upstream 79008 32394502 ~ 32411727 (-)
XLOC_032944 NA coding upstream 99582 32415076 ~ 32416753 (-)
XLOC_032945 LO017955.2 coding upstream 258502 32573996 ~ 32592792 (-)
XLOC_032946 NA coding upstream 371508 32687002 ~ 32687386 (-)
XLOC_032933 NA non-coding downstream 550234 31745291 ~ 31749784 (-)
XLOC_032927 CR847887.1 non-coding downstream 1152763 31069530 ~ 31147255 (-)
XLOC_032920 NA non-coding downstream 1841003 30452287 ~ 30459015 (-)
XLOC_032919 FP236850.1 non-coding downstream 2078048 30221834 ~ 30221970 (-)
XLOC_032952 NA non-coding upstream 875088 33190582 ~ 33210388 (-)
XLOC_032953 CR933860.1 non-coding upstream 1127840 33443334 ~ 33443455 (-)

Expression


Co-expression Network