G1393997 (LOC106566752)



Basic Information


Item Value
gene id G1393997
gene name LOC106566752
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 58274028 ~ 58278427 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1591894
TTTTTTcagcttttttctttttttataacATGACAATCGTGCTTTATCATATGACACCATTTAAATACATATCATGTTTATATTTTGTTGTACATTAGGCAGTGAGACTGTTAAAAATATACAAAACAATATAATTTTTTACTAGACATAGTTTCTATTTTTAATATAATCGTCAATGTCTTCATTGTCATCATCATTTTGTATACTTCTGTAAGATATGTGCTTTAGTTTCTGTGAAAATATTATTGCAGAAAACAGCAACTCCTTTCGAATTTTTTCAACATTTAGACAATAACTTCCAATGTATTACAAACATTCACAGTTACATGTTTTACACAGTACAGTTTTACAACAAGGTTCCAGAGAAAACTGTGGTAGAGTAACTTTATACAAAAGTGACAGGACATGAACTGTAGCCATTTCACATTTTCACTTAGTTGTTTTGCTTTTCAAAGTAAACTTGTTTTGTTGGACCAAATGCTTTTCACTATAGCTGCCATAGAAGCAAACTAGCATTGTCTTAACATGCCAAGGCAAAAGTTAAAGCTTTGTGCTTTTCACTAGTAAAGCAAAGACAACGAAAAGACAATTAGAAACAGACCACTCTTCTACTGGCCTGCACCTATACATCTACATATGTATTGCTGAATACATACTGATCAAACTATAATTGATCATACACATAAGAGTGAACAAAAAAGGACTATGTTTAAACATAGAGTTGGTCCAATATTGTTTTCTAGcatacaaagtgattttctggagaTCAGCCGAGTCATGCAAACAGACTATGGCTTGGCATAAATTGGTTGATAACTGGCTTAAAGCCTTCTCTGTTTTCGTTTTGGATCTGTCAAGAGACATTTTGGAATTTTATCTGATGTTACTGAGGAAAGCATGCAAAAAAAGTAAACAGGATTGACTGTCAGCATTAAGGGATAGTCAATGTTTGTAAATCACTTTTCTATACCCTGTGCTTTTGCATTTTATGTACGTTTTTGATACCCTGTGCTTCGCAAACTGAACACTGCATGGCATAGATAGTTCTTGCTTTCGTCTTCCTACAATTTTGGTCCTCGGTCACAACACTAAATAGTAGAAAACATCAAAAAATAATTCAAAAAAATGTTTCAATCACATAAAAGTAAAAAAAGAATACAAAAAATGGGGATAAAataacagtctctctcacacagaaaATATTTTGCAACATTAATACTGGATAAATCCAGGGTTCATAGACTTTAAACTTCTTATTGGCATTGTGCTTCTTCATCAGAGTTCCCTCATTGCCATGTGGCCTGTAATCAGCCCCACAGAGTGCAAGTAAGGCTTAGTAAACCACCACAATAATTTGACCCCGACCATTTTGTTCACCAGAACTTCATCTCTACTATAGTCACACTGTATTTACTTGGTTCATGAAGATATTCAACAAATTGCTATTCTACATTttcaatagttttttttctctcacagtATTACACAGTATGCTTACATATTTTTTGTTACCCAGATTACAGTAGATTTTGTGAACACTAACAGTCTTTGATTTTTGTATTTGTAATGCATaccaataaaaaaaacatcagcGTGTTGGCTTTACAAATGCAGAAAAATTAAACATGATATTTAAATCCGGTTTGATCAGATATTGCCCATGGAGGTAGGTGAATCAATTAAAATCTTGGAAGTCCTTGGTAATGTTTGACGTTCACTGCACTTTCTCCATGAGGGTTCTGCCTTGTCTAGACATTGGCCTCTGCGTTGGTTAGGTTGGTAAGGTTGGTTGAGTTGGTTGAGCTCGCTATATTGAGTGGTGGGATGGCTGGCTCAGTTGGCGTTGCGCTAACTGGATTGGGTGGTGGGCTGGTAGGGCTGGTTGGGTTGGCTGGAGTGATAGGGACGGTAGGGACGGTTGGGACGGTCAGACTGGTTGGGTTCACAGGGCTAGCCAGAGTAACTGGAATGGCTGGAGGTGTTGGGCTGGCCGGGGCTGCAGCAACCGGGCTTGTAGCAGTTGGGTTGGCAGGACTAGCTGGGTTGCCAGAACTAGCCGGGTTGCCAGAACTAGCTGGGTTGCCAGGGCTTGCTGGGTTGGCAGGGCTAACTGGGTTGGCCAGGTTAGCTGGGTTGGCCGGGTTAGAAGGACTAGCTATGTTGGTCTCCGCAACCACTGCTTCAGGCCCATTCTCCTGTGGCCGTCGAACCACTGCAGGCGGCTGAAACATTATCTGCAGGCGCTCTTTCCAAGTGCCCTTGAGTCCGAGATACATGTAGACCATGTAACCAGGAATGAGGACCATGGAGGACAGAGCCATGAGCCAGCCCACTCCCTGGCCCCAGGCGGGGAACACGTAGTTGTTCAAGGTGAGAGGAACCATTTGGACTGCACTGAACAGGAACACCCCAGCCACGATGAGAGGAGTGAAACAGACCCAGCACAGCTTCCACCATATACAGGGCTTGTAGCCAATCATCTCCTGGATGTTGTCATAGAACTTGTTCACACCTGTGAGCCAAATGAATGCATGACCAAAGTATTCAAATTCAATTTCTTCCAATTTACTGCTAGTCTGCCGTGAATTGTGATGAGGAAGGAGAGTTGGTGTAGTGTAGGACACGTTAGCAGAGTTGAAGTCCCAGGGGTTGAAGTTGGACTGATGTCTTTGGACAGGTGTGAGGTTATTCTATCATTCAACTGTACCTAGACCATCTAGTTCATTCATTGTTCATCCCATCACTTTAGGAACAGTGAGAAAACGCTTTAAAATCTTTTTCACAAATCTTACCTGAGGATATATCACTGTAACAGGTAATTTTGTCATGTTGAAATAGGGTGTTTCTGATGTATACTATTCACTGCAATAATGTAGCTACTGTGTGTATCTGATGTTGCCTAGAGACTCTACTTACCATAGAACCAGGATATGGAGATGCACTCAAAGAAGACCAGGAAGAGGAGACACATCCCACTGGCAGAGTAGTAGTCGAAGAGCTTGAACACGTACAGGCCTCCTGTGTGATGTTGGACAGGCCGATCAGGTAGGAGACCAGGCAGACAGCAGCGATGAAGAGCTCTCTCCTGCCCCTCAGTGCCCTGGGAAACtcatccaccagagctgttataAAGCCCTCCACTGTGCAgaactacaaacacacacacaaaatggggGACACTCAGCTAAAAAGGGGAGATATTTACAGTACTTTCCTTAGTATCTATGCAAGGCATCACTTCATGTTTCATCTATAATTGATCATCTTGTTCCTATTTGTAATTTTTttcacaataaatacatttttatcaaCTGCATAATTTGttaaattgttatttatttatttttcactaAAAAAGAACCAAAAAAGTGCACTGGTAATTGGAAATTACA

Function


NR:

description
sodium- and chloride-dependent GABA transporter 1-like isoform X2

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1591894 True 3392 TUCP 0.40 5 58274028 58278427

Neighbor


gene id symbol gene type direction distance location
LOC100136178 LOC100136178 coding downstream 38129 58229061 ~ 58235899 (-)
LOC110491122 LOC106566746 coding downstream 111948 58105100 ~ 58162080 (-)
LOC110492403 LOC106566745 coding downstream 176292 58093542 ~ 58097736 (-)
LOC118939560 NA coding downstream 195595 58073907 ~ 58078433 (-)
LOC118939561 NA coding downstream 203277 58070188 ~ 58070751 (-)
LOC110492410 LOC106566756 coding upstream 24084 58302511 ~ 58315644 (-)
LOC110492413 LOC106566757 coding upstream 88292 58366719 ~ 58394501 (-)
LOC110492417 LOC106566761 coding upstream 144477 58422904 ~ 58667831 (-)
LOC110491123 LOC106566759 coding upstream 397311 58675738 ~ 58730339 (-)
LOC110491124 LOC106566606 coding upstream 558214 58836641 ~ 58847057 (-)
G1393995 LOC106571908 non-coding downstream 5893 58267779 ~ 58268135 (-)
G1393983 NA non-coding downstream 18967 58254842 ~ 58255061 (-)
G1393979 NA non-coding downstream 23583 58250142 ~ 58250445 (-)
G1393955 NA non-coding downstream 61291 58212525 ~ 58212737 (-)
G1393947 NA non-coding downstream 75250 58198519 ~ 58198778 (-)
G1394005 NA non-coding upstream 16259 58294686 ~ 58294948 (-)
G1394018 LOC106566755 non-coding upstream 51278 58329705 ~ 58355527 (-)
G1394070 NA non-coding upstream 162630 58441057 ~ 58441816 (-)
G1394128 NA non-coding upstream 294009 58572436 ~ 58572717 (-)
G1394129 NA non-coding upstream 296275 58574702 ~ 58574912 (-)
G1393949 LOC105029132 other downstream 66863 58204759 ~ 58207165 (-)
LOC110492397 NA other downstream 380746 57887491 ~ 57893319 (-)
LOC110492394 psma7 other downstream 420242 57849674 ~ 57853907 (-)
G1391869 NA other downstream 1733099 56538592 ~ 56540929 (-)
G1391796 LOC100286403 other downstream 1836749 56424272 ~ 56437279 (-)
G1394067 NA other upstream 146031 58424458 ~ 58428113 (-)
G1394341 NA other upstream 468443 58746870 ~ 58747299 (-)
G1394768 LOC106566610 other upstream 832945 59111372 ~ 59112897 (-)

Expression



Co-expression Network