XLOC_032943 (usp1)


Basic Information

Item Value
gene id XLOC_032943
gene name usp1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 32394502 ~ 32411727 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064000
TGAACTCAGCAACAGCAAGCAAAACAATCCAGACAAGCCATCCAGCTTGTCCAGTCGTGCTCTCCTTCAGAACGCTGTAAAGAAAGAGCCAGAGGAAGACTGCGCTGATGCTGTGGCAGACGGGACACAGGTCAGTTTTGACCTCGCTCTCAGAAATCTTCTGGACTTTGAAGGAAAGTGGATGCTGTTTGATGACTCTGAAGTGAGACTCTATGAAGAAGAGGACTTCCTCCGTGCTTGTTCTCCAGAGACGTGCTCCACCTCTACACCATACCTGCTCTTCTACAAGAGAGTCTCTCAGTAAAACAGGCAATAGTAGCTGAGAAGAAAGTAAGGATCTCCACATCACAAAAATCGAACTGAAAAACACGAGAGTTTGAGCCAAGATGAAAGACAGTGCAGCAAGAAGCAGTTTTGAACACAGTATGACCTTTCTCTGAAAACTGTATTAGAAGAGGTGGACATGACAGGACAACCAAAGAAAACCTGACGTCCTTAAACAGCAAGTGAGCAACATCTGCACTCCAAACAAGAGTCAAGGAATGAAGCAAAACAGAACGTTTATGATGCAGGAAGTGCTGAAAACGTGTCGCTGTGGCCCAATTCAGAATGCCAGACTGAAACGGTTACGTTAATAGaaacagaatgatagacagaactAATATGTGCGGGAGTTACAAGGAAGGCAAATAAAgcacagtaagaaaaaaaaaacaaa
>TCONS_00064001
TCAGGCACTAGACGCAACTCCTTGTCGTGGAAAAAGCGCCAAGTTCTACAGCAAACGCGCTTGTCAAGTTGTTTATATTTAACGCGAAACCGCGTACTTTTAGAGTGTACTCCGCAAAAATGTAACCCTTGCATAAGAAGTCTTATAAGTAAAAGGTTAAAATGCCCGGGCTGCACAGTGATAGTGGAGTTGTGACTGCAGCTGGCAGTCCTGTGAAGAAAAGCAAACTCTCattgaagttctttcagaagaaggaAACCAAACGCGCTCTGGACTTCTCAGAGGCCCCGCCAGAAGACAACAGTAACGTTACCGCTGAGCCGCAAGAGACTATTTGTCATGACCAGGTTGTGCCATTGCCCTGCCCTTCGTCTCCTCTTACCTGCGAGAAGCGCGAGAGCCTGGTCCCCTTCGTTGGGTTTAATAATTTGGGGAACACCTGCTACTTGAATAGCATCCTTCAGGTTTTATATTACTGTCCTGGTTTTAAAGAAGCCATCAAGTCCTTGTGTCATGTGGCTAAACTGAAAGACAAACCGCAAGAAGAGGGTGCCAACAATGAGGGGGACTCTGGTGAGAACACCCTACCTGTTCCCATGGAGCTGTTGGGCAGTTTCCACAGCCTCATTTCCTCTGTGGAGCAGCTGCAGTCCAGCTTCCTGCTTAACCCAGAAAAATACAATGATGGAGAGCTAGCCACACCACCACGTAAACTGCTTAATGCGCTCAGGCAGCTCAACCCAATGTATGAGGGTTACTTGCAGCATGACGCACAGGAGGTCCTGCAGTGCATTCTTGCGAACATTCAGGAGGCCTGTGACACTATCAAAAAAGAGCAAACAGACAACCAGGACACCACAATGATCAATGGAACCGAGTCTGTCCAGGATGGTGACGGGAGCTCTGACAGCCAGCTGAGTGGAAAGAGAAAGAGTGACACAGAAGCAGGCAATGCTAAGAAGAAGCCAAAATCTCAAAGCAAGTCTAAGAAAAATGAAGAAAACGTGCCTATGACCCGCTCGAAACGCAAGTCCTCCAGTGAAATAAGCACAGAGAATTCAGCTACTGAGCAGAGGAATGGCACAGAAGAGCAAGAGAAGGATAGCACCACAGAAGAAGAGAAGAATGACAGTCCACCTAAAGATACAGGCAAGAGGACTAGGAGAGGGAAGCTGGGCTGGTTGAGGCCATCAGGGAAGCAGCCTAGCATCTTCTCCAAGTTTCGCAGCATGGGACGAATTACTTCACATGTAGGAGCAAAAGGAGAGACCAAGGAGAAGTCAGATTGTAGTTCTCAGGAGAAACAGGACAAGGACAACtctgagaatgaaaacaaaactcaTGAAGTTAAACAGGATCTGGGAAAGAATGAAGAGCAATCAGGCCTGGATGTGCTGAAGTGGATGTTTCAGGGTCAGCTGGTGTTGCGGACACGTTGTCTGGAATGTGAGTGTTTCACAGAGAGAAGAGAGGATTTTCAAGACATCAGTGTGCCTGTGCAAGAAGACGAAACCCTCTCTTCTGACTCTAGTTCTGAGATTTCTCCAGATCCCAAGACCGAGCTGAAAACTCTAAAGTGGGCCATATCTCAGTTTGCATCTGTTGAGCGTATTGTGGGCCAAGATAAATATTTCTGTGAGACCTGTCATCACTACACAGAAGCTGAGAGAAGTCTTCTGTTTGACAAAACGCCAGAAGTCATCACAATCCATCTGAAGTGCTTTGCTGCCAATGGCTCAGAgatGGACCCTTATGCTGGCCTTTCCAAGGTGAACACTCCTCTGCAGACTCCTCTGAAACTCTCCCTGCATGAGTGGTGCACTCAGCCTGACTCTCCAGACTATGAGCTCTTCGCCGTGGTCATGCATAGTGGAGTGACCATCAGCAGCGGTCACTACACCACCTACATCCGCATGATGGATCTCCATCACACCAACATCAAGCCTCAGACTCAGGATGAAGAGCATGACCGAGACCAAGAAGAAGACATGAAACAGAAGAAAGAGGAAACTTCTCAAACCGACTATGATGATGGCGAGGTGTCCTTCAGCTTGTCTGGCAGAGGGCGAAATGTGGCCAGAACCAGCGGAACTAATAACATGTCCAGCAAAACGGCAGGCAAGAGGTGCTCTGAAGGTGTTGGCCTTTTAGGAGGACAAAGGAGCATCACCAGCTATGAACTCAGCAACAGCAAGCAAAACAATCCAGACAAGCCATCCAGCTTGTCCAGTCGTGCTCTCCTTCAGAACGCTGTAAAGAAAGAGCCAGAGGAAGACTGCGCTGATGCTGTGGCAGACGGGACACAGGTCAGTTTTGACCTCGCTCTCAGAAATCTTCTGGACTTTGAAGGAAAGTGGATGCTGTTTGATGACTCTGAAGTGAGACTCTATGAAGAAGAGGACTTCCTCCGTGCTTGTTCTCCAGAGACGTGCTCCACCTCTACACCATACCTGCTCTTCTACAAGAGAGTCTCTCAGTAAAACAGGCAAGTGGATTCGGACAACATACTTACGGAGTTTTGCTGAACTACATTAAGTACTTGTGCAGGAAATGTGTTGATAGTTGATATGTATGTTTTTGGAACAGATGTCAGCAGGAAGCAGATTTGAACTCTTAAGGCTGTGGCATTTGTTGCCAACTTTTTCCCTTTTTGTTCCTTCACTCTTTGTTCTTGATAAGTGAATCCATGTCATCTGCTTTTTAGTGACCCTCATGCAAACGCACCTTGGCACTTACTGAAGTGCACATCGGCTTTCCTGTACTTTCAAGCATTCCCTAAAATCTTGGCACAAGTAATTTTATTGTGCactgatgttttatatttttttaatgagatCAATTTTTGGTTGTTTGAGTTTTCGTCTCGAGTATGAATTTGCATTTTGACTGCCCTGTTTTAGAGGATGTTCATAGTTTAAAACCCAGTGTAGATTTCACATTGTTGATAGTAGAGGACACAGGTATTGTTTTGCTCCCAACGGCAGTTATGACTATTTGCACACAGAGATCAAGCTTCATTTGACAAGTGGTCGATTCTGAAAGGACAGAGTGTACTAATTGTCTATATAGAAGTGACCACAATGATAAAGTGACATATTTTTGTAGTTTCTCTGCCATACCTCAATCCAGTCTGAAGAAGCTTTCCTCCTTTTACGTGTTGTAAGCAGGCCCTACCAGTACAGCTAGATCTCTGAGCAATAAATAACACCCTTCGTGTAGAGTCTCTATTACTACATGGTATTCTATTGTATATTTGAGGACAGagggaaaatgtaaatatttttctattgTCTGGTTATGTAGATTCTTATTTACCACATTAAAACACCagcatataaaaaagaaaa
>TCONS_00064002
TCGTGGAAAAAGCGCCAAGTTCTACAGCAAACGCGCTTGTCAAGTTGTTTATATTTAACGCGAAACCGCGTACTTTTAGAGTGTACTCCGCAAAAATGTAACCCTTGCATAAGAAGTCTTATAAGTAAAAGGTTAAAATGCCCGGGCTGCACAGTGATAGTGGAGTTGTGACTGCAGCTGGCAGTCCTGTGAAGAAAAGCAAACTCTCattgaagttctttcagaagaaggaAACCAAACGCGCTCTGGACTTCTCAGAGGCCCCGCCAGAAGACAACAGTAACGTTACCGCTGAGCCGCAAGAGACTATTTGTCATGACCAGGTTGTGCCATTGCCCTGCCCTTCGTCTCCTCTTACCTGCGAGAAGCGCGAGAGCCTGGTCCCCTTCGTTGGGTTTAATAATTTGGGGAACACCTGCTACTTGAATAGCATCCTTCAGGATGGTGACGGGAGCTCTGACAGCCAGCTGAGTGGAAAGAGAAAGAGTGACACAGAAGCAGGCAATGCTAAGAAGAAGCCAAAATCTCAAAGCAAGTCTAA

Function

symbol description
usp1 Predicted to enable cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Predicted to be involved in protein deubiquitination. Predicted to act upstream of or within regulation of DNA repair and ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol and nucleus. Orthologous to human USP1 (ubiquitin specific peptidase 1).

GO:

id name namespace
GO:0016579 protein deubiquitination biological_process
GO:0006508 proteolysis biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0006282 regulation of DNA repair biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
ko03460 Fanconi anemia pathway
ko01002 Peptidases and inhibitors
ko04121 Ubiquitin system
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-030131-726 Predicted to enable cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Predicted to be involved in protein deubiquitination. Predicted to act upstream of or within regulation of DNA repair and ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol and nucleus. Orthologous to human USP1 (ubiquitin specific peptidase 1).

Ensembl:

ensembl_id ENSDARG00000056414

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064000 False 718 processed_transcript 0.44 2 32394502 32405841
TCONS_00064001 False 3347 mRNA 0.45 9 32404671 32411727
TCONS_00064002 True 541 mRNA 0.48 4 32409112 32411703

Neighbor

gene id symbol gene type direction distance location
XLOC_032942 angptl3 coding downstream 45349 32344197 ~ 32349153 (-)
XLOC_032941 atg4c coding downstream 79008 32300018 ~ 32315494 (-)
XLOC_032940 NA coding downstream 197677 32195808 ~ 32196825 (-)
XLOC_032939 foxd3 coding downstream 300672 32092032 ~ 32093830 (-)
XLOC_032938 alg6 coding downstream 307391 32065094 ~ 32087111 (-)
XLOC_032944 NA coding upstream 3349 32415076 ~ 32416753 (-)
XLOC_032945 LO017955.2 coding upstream 162269 32573996 ~ 32592792 (-)
XLOC_032946 NA coding upstream 275275 32687002 ~ 32687386 (-)
XLOC_032947 mafaa coding upstream 287632 32699359 ~ 32703317 (-)
XLOC_032948 zc3h3 coding upstream 305711 32717438 ~ 32834385 (-)
XLOC_032933 NA non-coding downstream 644718 31745291 ~ 31749784 (-)
XLOC_032927 CR847887.1 non-coding downstream 1247247 31069530 ~ 31147255 (-)
XLOC_032920 NA non-coding downstream 1935487 30452287 ~ 30459015 (-)
XLOC_032919 FP236850.1 non-coding downstream 2172532 30221834 ~ 30221970 (-)
XLOC_032952 NA non-coding upstream 778855 33190582 ~ 33210388 (-)
XLOC_032953 CR933860.1 non-coding upstream 1031607 33443334 ~ 33443455 (-)

Expression


Co-expression Network