XLOC_032944


Basic Information

Item Value
gene id XLOC_032944
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 32415076 ~ 32416753 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064003
TTTAGATTACAAAATGCATTGCTTCCTGCTACAGCCTAACTGTGTCATGTCCAAAGACAGGCACTGAGACCAACCCATAATAACATCCGAATCCATCACCCGCTATCTCTACCGCGCGCGCTCTGCACATGAATCAAGCAGGGACCTTAATATGCATGGCACCCAGGATCTCGCCTCGGGCATCGCGGGATATCACAGAGATCTCGACCGGCTGAGCTCACCGTCTCTGGACCGCTGCAAACGAGCCAGTCACCATCGCGAAATAACAAGCCTGAGCTGTCGAGCAGCACTGCAGACGCGCGAGCAGGAGCGCAGTGCTGCACTACGGCACGACCGAGCGCGTGTCTCGCATCTCTGCCAGATTGACACCCAGTAACAGCCAGCTGGTCGACATTAAGACAACCCAGCGGGGAGGTAAACTGAAACAGCATAGCCAAGCGCGAGATGACATGAGCTGTGTTATGAGAGACACTGTAGGCTGCCTACTACATTAAACGCTGCGTTCATGATGGACAGACATcctatataaactaataaaacagcCATGAGGAATATGTGCAACTTAACGCACAATTATATTCAAAGACCACCAAATGACACAGACCAAAGAGAGGAGGCACTGCAGAGGTGAGGCAGACCTTCAAGGAATATCCAGCACAGGGAGGAAGCCgcaggcagcagcagcagcagcaatggTGCTACACACtcctcaacacacacactcacactcactcagCCTCTGCGATATTGTTATTGAGGTTTGTGGAAGGGGACGGCAGAAGGCTCTCATAACAAGCGCTATACTGTGAGGCTGAACACACCTCCCTCCACAGAGCTCATCCAATGGCAGACGCAGGGTCaggcacactaacacacacacatcagcagcagcagccaACACCCCCATACAGATCCCCATCATGTTCAGATGCTATAGGATTAAAGTAGTGCATGCTAAAAGATTATGCTGTTGTTTATCCACATTGCCTATACAATATGTATGCTGCTTGAGCTTTGCACtgacatgtgtatgtgtgtccaGCTggagtgtagtgtgtgtgtcaCTGATACTGAGGAGGGTTTAGTGTggtaaagtgatttaaaaaacagCACAGCTCAGCTGGGGCTGAAAGAGTACAGGACATGCCTCTCATTCTTGAGCTCGCTGCTCTATTTCTTCGCATTTCCAGACTCCAGGCTTCTTCCCAGGGCTGGTGTGCCTGCATTCTGTTAGACTGCGTGGTGTACACTGTAGGGAATGAGAAGAGGTGCATTTAATCAGCTACACTCATATAAGTAGAATGTATGTTTTACTTGAAGTTCTTTTTATTACATAATTATGTATGCATTGTATTTAAATTGTTCTGTTTAgcaatacaacaaaataaataaacaaataaaaataaatagtcaatCATTTTGGCCAAATATATGTAGTTAAAGCTAaagtagtttaatttaattttaaatatctaCAATAAGGTGACGCG
>TCONS_00065181
TCTGATTCAGTCAACTTGCGGTTTAGATTACAAAATGCATTGCTTCCTGCTACAGCCTAACTGTGTCATGTCCAAAGACAGGCACTGAGACCAACCCATAATAACATCCGAATCCATCACCCGCTATCTCTACCGCGCGCGCTCTGCACATGAATCAAGCAGGGACCTTAATATGCATGGCACCCAGGATCTCGCCTCGGGCATCGCGGGATATCACAGAGATCTCGACCGGCTGAGCTCACCGTCTCTGGACCGCTGCAAACGAGCCAGTCACCATCGCGAAATAACAAGCCTGAGCTGTCGAGCAGCACTGCAGACGCGCGAGCAGGAGCGCAGTGCTGCACTACGGCACGACCGAGCGCGTGTCTCGCATCTCTGCCAGATTGACACCCAGTAACAGCCAGCTGGTCGACATTAAGACAACCCAGCGGGGAGGCACTGCAGAGGTGAGGCAGACCTTCAAGGAATATCCAGCACAGGGAGGAAGCCgcaggcagcagcagcagcagcaatggTGCTACACACtcctcaacacacacactcacactcactcagCCTCTGCGATATTGTTATTGAGGTTTGTGGAAGGGGACGGCAGAAGGCTCTCATAACAAGCGCTATACTGTGAGGCTGAACACACCTCCCTCCACAGAGCTCATCCAATGGCAGACGCAGGGTCaggcacactaacacacacacatcagcagcagcagccaACACCCCCATACAGATCCCCATCATGTTCAGATGCTATAGGATTAAAGTAGTGCATGCTAAAAGATTATGCTGTTGTTTATCCACATTGCCTATACAATATGTATGCTGCTTGAGCTTTGCACtgacatgtgtatgtgtgtccaGCTggagtgtagtgtgtgtgtcaCTGATACTGAGGAGGGTTTAGTGTggtaaagtgatttaaaaaacagCACAGCTCAGCTGGGGCTGAAAGAGTACAGGACATGCCTCTCATTCTTGAGCTCGCTGCTCTATTTCTTCGCATTTCCAGACTCCAGGCTTCTTCCCAGGGCTGGTGTGCCTGCATTCTGTTAGACTGCGTGGTGTACACTGTAGGGAATGAGAAGAGGTGCATTTAATCAGCTACACTCATATAAGTAGAATGTATGTTTTACTTGAAGTTCTTTTTATTACATAATTATGTATGCATTGTATTTAAATTGTTCTGTTTAgcaatacaacaaaataaataaacaaataaaaataaatagtcaatCATTTTGGCCAAATATATGTAGTTAAAGCTAaagtagtttaatttaattttaaatatctaCAATAAGGTGACGCG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064003 False 1490 lncRNA 0.46 2 32415076 32416732
TCONS_00065181 True 1309 lncRNA 0.47 2 32415076 32416753

Neighbor

gene id symbol gene type direction distance location
XLOC_032943 usp1 coding downstream 3349 32394502 ~ 32411727 (-)
XLOC_032942 angptl3 coding downstream 65923 32344197 ~ 32349153 (-)
XLOC_032941 atg4c coding downstream 99582 32300018 ~ 32315494 (-)
XLOC_032940 NA coding downstream 218251 32195808 ~ 32196825 (-)
XLOC_032939 foxd3 coding downstream 321246 32092032 ~ 32093830 (-)
XLOC_032945 LO017955.2 coding upstream 157243 32573996 ~ 32592792 (-)
XLOC_032946 NA coding upstream 270249 32687002 ~ 32687386 (-)
XLOC_032947 mafaa coding upstream 282606 32699359 ~ 32703317 (-)
XLOC_032948 zc3h3 coding upstream 300685 32717438 ~ 32834385 (-)
XLOC_032949 adcyap1r1a coding upstream 549997 32966750 ~ 33023745 (-)
XLOC_032933 NA non-coding downstream 665292 31745291 ~ 31749784 (-)
XLOC_032927 CR847887.1 non-coding downstream 1267821 31069530 ~ 31147255 (-)
XLOC_032920 NA non-coding downstream 1956061 30452287 ~ 30459015 (-)
XLOC_032919 FP236850.1 non-coding downstream 2193106 30221834 ~ 30221970 (-)
XLOC_032952 NA non-coding upstream 773829 33190582 ~ 33210388 (-)
XLOC_032953 CR933860.1 non-coding upstream 1026581 33443334 ~ 33443455 (-)
XLOC_032955 CR855206.1 non-coding upstream 1309294 33726047 ~ 33726148 (-)

Expression


Co-expression Network