G1394768 (LOC106566610)


Basic Information

Item Value
gene id G1394768
gene name LOC106566610
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 59111372 ~ 59112897 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1592757
AGCCATATGTCTCTTTATTGATGATGTGTTGACTACTTATCCATTGTGCACAACCCAGGGTTAAAACACGCAATACTGAGTCTGCTCACTTTACAGTACgacaaagaggagaggagagaggggctggggttTTCAGAGCACGGTATATAAATATCAGTAAGTTTATACATGCACATAGAGATGACTAAACAATCTTCTGGTTCGTTACAAGCTGGTGCCAGGGGGTTGGGGGTAGAGGGGGGCAAGGCAGAACGCACAATCGTACAGTACTTGTATCGTTGCTAAGGTTTCTATCACATGCCCAGATGGGGGCGAAGCAGGTAAGAGGGAGAAACAGGAAGTGGTAGTATATTCTCCTGGCGGGCACAGTTTatagtgagaggagggagggaaagagccCATccaggagTTGGGGGGCTGATAGTGGGGTGAGGGTGGGAGTGCTTGGGGGATGGCTGTGAGGAGTTGGGGGGCTGATAGTGGGAGCATCAGGTGGCCAGCCACAAGCATTCGTTCACGTCTCTTAAGTTAAATGGATCTCTTTATACTAATGACACAATTTGGTATACATACTGTACAACCACCACTGAGCTGGCACTGGGACCACAGGGGTGGGGAAAGGTGGCGTCTGTGTCTGGGGTTCAATACGCTAACATTTAATAGTGAAATAAAACACAGGaggaacacacagacaggtagacagacagacagaccaacaggggTTAATGCttcacaacacagtcacacaatGTACAACAAACTTCATTGTTTTATAAAATCATACAGGATTCATCTTATAAATGCCTTTGGGCTATAATACAAAACATATTAAATCAAAGAGTCTTCTGTTCTTCTTGAACTGCAGAGAACACTGAGAGAAATACAACGTAACCATGCATACAATGGGGTCGGACTGGtggcacaagtgtgtgtgtgtgtgcatgtgtatgtgtgtgtgcatgtgtatgtgtgtgtgcatgtgtatgtgtgtgtgtgtaagcgagagagatcgagagagccAGGGAAAGAGCGagtctgtgtgtgaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtctggtggagGCAGacaaagaaaacaaaacaaataaaaagtGCCAAGGTAAAGTGAATTCAAGTAATGTGTGCTCTGTCCACAGGAGAGGGGGCGAGAggtgggaaggagggggagggtccTGTGGCCTCAACGGAGCCTCCCTATTGGCTCTTCCTGTGCTCCGTCAGGCTGACGGGCGTGATTGTGGTTGTTTCCCCGCGGGCGGCTCTAGAGAGAAGCTCCACCCACTGCTCCTGGACCTCTGCATCCTGGGTGCTGAACAGCAGAGCCTGCTGGGAATTACTCAGCCGGAACGCGTGTTTGAGCTCTGACTTCTCTGTTGCCGATGGCGCTGCCATGTTCACCTCAAACCCCGGGAGGGGTATGGCCCGTACCCCACGGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1592757 True 1458 TUCP 0.49 2 59111372 59112897

Neighbor

gene id symbol gene type direction distance location
LOC118939564 NA coding downstream 85246 59019837 ~ 59051938 (-)
LOC110492420 NA coding downstream 214407 58886676 ~ 58896965 (-)
LOC118939563 cf105 coding downstream 233870 58871749 ~ 58877502 (-)
LOC110492419 LOC106566607 coding downstream 240581 58865549 ~ 58870791 (-)
LOC110491124 LOC106566606 coding downstream 264315 58836641 ~ 58847057 (-)
LOC110492425 LOC106566615 coding upstream 63037 59175934 ~ 59206144 (-)
plxnd1 LOC106566625 coding upstream 301115 59413470 ~ 59538798 (-)
LOC110492431 LOC106566626 coding upstream 428490 59541387 ~ 59640728 (-)
mrps25 mrps25 coding upstream 632479 59745376 ~ 59752581 (-)
nr2c2 nr2c2 coding upstream 648907 59761804 ~ 59775363 (-)
G1394737 NA non-coding downstream 31495 59040849 ~ 59079877 (-)
G1394673 NA non-coding downstream 112961 58945943 ~ 58998411 (-)
G1394696 LOC106566609 non-coding downstream 122573 58982821 ~ 58988799 (-)
G1394670 NA non-coding downstream 176175 58933041 ~ 58935197 (-)
G1394777 NA non-coding upstream 557 59113454 ~ 59113981 (-)
G1394778 NA non-coding upstream 1197 59114094 ~ 59114533 (-)
G1394806 NA non-coding upstream 24064 59136961 ~ 59137258 (-)
G1394807 NA non-coding upstream 25161 59138058 ~ 59138329 (-)
G1394809 NA non-coding upstream 28917 59141814 ~ 59142036 (-)
G1394341 NA other downstream 364073 58746870 ~ 58747299 (-)
G1394067 NA other downstream 683259 58424458 ~ 58428113 (-)
LOC110492410 LOC106566756 other downstream 804731 58302511 ~ 58315644 (-)
G1393997 LOC106566752 other downstream 832945 58274028 ~ 58278427 (-)
G1394978 LOC106566621 other upstream 241303 59354200 ~ 59356849 (-)
G1396467 NA other upstream 1441859 60554756 ~ 60582035 (-)
LOC118939463 NA other upstream 1548659 60661556 ~ 60672085 (-)
G1396543 NA other upstream 1580712 60693609 ~ 60694036 (-)
abhd6b LOC106566659 other upstream 1640208 60753006 ~ 60758788 (-)

Expression


Co-expression Network