Gene
RNA
| Item | Value |
|---|---|
| gene id | G1394989 |
| gene name | brpf1 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048580.1 |
| NCBI id | CM023234.2 |
| chromosome length | 78541548 |
| location | 59286243 ~ 59286979 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| brpf1 | Enables histone binding activity. Acts upstream of or within anterior/posterior pattern specification. Located in chromatin. Is expressed in brain; digestive system; epithelium; head; and olfactory pit. Orthologous to human BRPF1 (bromodomain and PHD finger containing 1). |
| description |
|---|
| peregrin-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1593026 | True | 563 | lncRNA | 0.62 | 2 | 59286243 | 59286979 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110492425 | LOC106566615 | coding | downstream | 80099 | 59175934 ~ 59206144 (-) |
| LOC118939564 | NA | coding | downstream | 260117 | 59019837 ~ 59051938 (-) |
| LOC110492420 | NA | coding | downstream | 389278 | 58886676 ~ 58896965 (-) |
| LOC118939563 | cf105 | coding | downstream | 408741 | 58871749 ~ 58877502 (-) |
| LOC110492419 | LOC106566607 | coding | downstream | 415452 | 58865549 ~ 58870791 (-) |
| plxnd1 | LOC106566625 | coding | upstream | 127033 | 59413470 ~ 59538798 (-) |
| LOC110492431 | LOC106566626 | coding | upstream | 254408 | 59541387 ~ 59640728 (-) |
| mrps25 | mrps25 | coding | upstream | 458397 | 59745376 ~ 59752581 (-) |
| nr2c2 | nr2c2 | coding | upstream | 474825 | 59761804 ~ 59775363 (-) |
| wdr46 | wdr46 | coding | upstream | 501585 | 59788564 ~ 59795744 (-) |
| G1394799 | NA | non-coding | downstream | 103540 | 59182069 ~ 59182703 (-) |
| G1394801 | LOC106566613 | non-coding | downstream | 127290 | 59157216 ~ 59158953 (-) |
| G1394809 | NA | non-coding | downstream | 144207 | 59141814 ~ 59142036 (-) |
| G1394807 | NA | non-coding | downstream | 147914 | 59138058 ~ 59138329 (-) |
| G1394806 | NA | non-coding | downstream | 148985 | 59136961 ~ 59137258 (-) |
| G1394937 | NA | non-coding | upstream | 6129 | 59293108 ~ 59293331 (-) |
| G1394993 | NA | non-coding | upstream | 7836 | 59294815 ~ 59295121 (-) |
| G1394997 | NA | non-coding | upstream | 15372 | 59302351 ~ 59302792 (-) |
| G1394999 | LOC100136012 | non-coding | upstream | 18476 | 59305455 ~ 59305754 (-) |
| G1395015 | NA | non-coding | upstream | 44078 | 59331057 ~ 59333116 (-) |
| G1394768 | LOC106566610 | other | downstream | 173346 | 59111372 ~ 59112897 (-) |
| LOC110491124 | LOC106566606 | other | downstream | 439227 | 58836641 ~ 58847057 (-) |
| G1394341 | NA | other | downstream | 538944 | 58746870 ~ 58747299 (-) |
| G1394067 | NA | other | downstream | 858130 | 58424458 ~ 58428113 (-) |
| LOC110492410 | LOC106566756 | other | downstream | 979602 | 58302511 ~ 58315644 (-) |
| G1394978 | LOC106566621 | other | upstream | 67221 | 59354200 ~ 59356849 (-) |
| G1396467 | NA | other | upstream | 1267777 | 60554756 ~ 60582035 (-) |
| LOC118939463 | NA | other | upstream | 1374577 | 60661556 ~ 60672085 (-) |
| G1396543 | NA | other | upstream | 1406630 | 60693609 ~ 60694036 (-) |
| abhd6b | LOC106566659 | other | upstream | 1466126 | 60753006 ~ 60758788 (-) |
