XLOC_032948 (zc3h3)


Basic Information

Item Value
gene id XLOC_032948
gene name zc3h3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 32717438 ~ 32834385 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064006
CCGATGTCAATACTTTCGATTTCTGTTAAAAAAGTAAACTCAGCAGAACTCTAGCAGAACTATTCGTCTTTCTCTACATACGTTGTGTACTACGATTAAACGTTTACTAGAATTTAAAGAGATTGTCAGAAGTATATAATGGTGTTCTAAATAAAACTACCCCTGACATTCTGTGCTGTCGATGTTTTGTAAAGATAGGGGAAGTGTTTTTGAGCAAAACCAAAAGTAAAGAGTCATGTTGAGAGCCGTGTTGTGATTGGATGTTGGTTGTATACGTCATCACAGCCGGCGTCGCGGTTTTTATGACGGTCGTGTTTTGGTGTGAAGATGGCTGAACGTGAAGCGCTTAAGAGAGAAATAGAGGAGCTGCAAAACCTCATTAATGACTATAAAAGTACCCATGGTGACGTTCCATCAAGCGCTGGCCAATGGGGTCATCCCAGACGTGGTTTAAGGAGTGGCCAGGGCCAAGGTCGAGGTCATGCCGCACACTACACACAATCATATTCATCATTGCCACATATGGCTCATTCTTCTGGCAGCTGGAGGAAAACATACTCGCTTAACAACAAGACCAACAGGGCATCTGGGAGTCATGTATTCCATTCAGCTGTAAGCCATCCTTCTCTCCACATTAGCACATCTGGAGCAACTGCCACTGGGAGTAATGATGGACTTATTGGGAGCAACAGTGTTTCATTTAAAAAGCAGCAACCTAAACAAACCAAGGAAAAACCTGTACCATCTTCACACGGTGTTCAGTGTGACACTTCAAAAGAGAAGAAAAGTGAAGAGAGCACAAAAACGACAATGCTTTTGTCTGCAACAGAAAAAGTTCATCATGGCTGTTCCTCTACCAATGAAACAACTGACTCGACTTCATCATCGGGGTCTGAAAGAAAGATAAAACCCACTTTAAAATCATCAGCAGTGAACAATCCCTCTATTCCTTCAACTGTCAAAGCTGCAGCTCAGCTTCAAGTCAAACCACACCTCCCCCCTTCATCCTCATCCAATAGGACTGTTGTAATCCCATCTGCCAAAAAAGATTCTACTACGGCTTCTTCTGCCTCTAACCTTCAGTCTCAGGCTACAGTGAGTCCAGCAAAGCCCCAGGTAAAGCTAGACTCAACTCAGACACATGCAGCCTCACCATGCCATAAGAGATCTCAGTTTACTTGGGTAAAAAGCCAAGAAACGGTAAACATAAACAGCACACCTAAGCCACTAACCTCAGGATCTTCTCCTGGGATGATTTTCACCAGACGAGCCTCCAGCTCTAGTAAGAGGGTGTCTCGCAAGCCTAATAATTCCCCCGGAGCTCCTAAGACCTCAAAGTACACTTGGGTGTCTTCATCTTGCTCTTTGTCAACAGCTGGGAAAGCAAACCCTTCAGTGAAATTGCCACGCAAACCGCTTTCGCCAAAATCTCTTAAAGCCCCTGTAAGAACTTTTCAAGGTGGAATGGAGGGAATCAAGAAAGAAAAGAAGTATACCACAGTGACTGTGACGCCTTTAAAAAAGTCTAGAGCTGGTGCTGTCACTACATCCCATGCTAGTCATACCAGTCGCTATCGCTGGAAGGCGGCTGGACAAAATGCTAATGCAAGTACATCTAGTTCAGCTTCAAGGACGACCCATAAGAGCACTGTGTATCGGTGGACTGCTAACAACAATGGCCAAAAGGGGGAAAAGGGATCTACCTTGTCTCCTAATATCCCTGCTACAGCCGCATTGTCAGTTGGCGCCTTTAAGCTGAGGAGTCGAACCAAGATCATCAGACGATCTCCTAGCAATCCCTGCTTAGAGAGAAGACACAGTCCCAATGTGCAGACTTTAAAGAGTCGGTATTCCTTGTGGAGGAGGACACACACTCAGGTGAAGAGTCCAACCAGTATTAAGCGAGCACAGCCCAAAGTGCTGGTTTCATTTGGCAGGCACAAGCTCCGTCGCCTCTCTCTCACCTCCACCTCATTAGGGACCTCAAGATCAGGCCCATCTTCGTCTTCAGTGCGAAGCCCAGCATCACACAGGGTCATCAAAACACGCTACAAGATCGACACACGCAGAGCACATGCAATCCATCACAACCCTGCTCTTTCCTACAGGGTCAAAAGAGTACATTCTGCCAGAGCCCTCTTGCAGAATCGTATGAGGACAACTTCAGAAAGGCAATGGAGAGGGCGGAGCATGAGGTGGATAGGCGGAGAGCTGTACAGAGTCTCGGCCAATAAGTTATCTCGCACTCAAACCACCTGCACGCCTACAAGTAGACCTGGAGAGTGGTATAATCCATATGTTTCCTCTTCTGGTCATCAAGGAAGAACATCAGCCACACAATATGTGGCCAGTCGTGCTGTGCAGAGGAGTTTAGCAATAATACGACATGCCAAACAGAAGAAACAGAAGGCCAAGCAGTACTGCATGTATTACAACCGGTTTGGCAAGTGTAACCATGGCAACACCTGCCCCTACATCCACGACCCCGACAAAGTGGCTGTCTGCACCAGGTTTCTCAGAGGCACATGTAAGAAGACAGATGGAACTTGTCCGTTTTCACATAAAGTTGCCAAAGAGAAGATGCCGGTGTGCTCATATTTTCTGAAAGGGATATGTAATAACAGCAGTTGTCCCTACAGCCATGTCTATGTGTCTCGTAAAGCTGAGGTGTGTGAAGACTTTGTGCGAGGCTACTGCCCTCAGGGAGATAAGTGTAAGAAGAAACACACGCTGGTATGCCCAGACTTCTCCAGTACTGGTGTGTGTCCACGTGGTTCCAAATGCAAACTGCACCACAGACAGAGCAAGAAACGTACTGGCTCTAATGCAAGCTATGGAGCGGCCAAGAAAGCTTGTACAAGAGATGTTTTAAGGAGCTCGGATGCAGCTCAGACTCAGTCTTCAGAGTCCACACTGGCAGATGAAGGCTCATCGTGCTCTCGTCCAGAGAAGTTGCCCTCCTTCATCTCTTTGTCCAGCTCTCCTGATGGCTCAGAAAACCCTGATACCCCCAAAATCCCTCCTGCTACAGGCCCACAGGCCAAAGGAAAGACACTACATATCAAGCCACGATTTCTCTCTACAACACAGACAGACCCCTCGCCAAAGGAGGGCTGATGGTGGGTGTTTTAATCCGTAATtaacaatgaaaaatatttcTTCATTCTTATTTTAGAAATGACCCTGCTTCACAGATAGTTTACAGgcgtctttaaattacactttcataAACTTTTTGGTCTCAAGACACATTTAGATTCAAAGTTCTGAGATGCAAATTCTAAGAATTGATAATACAGATTGTTTAAAATACCTCGAAATCAATTTCTGAGctgcaaaaacaaaatgcagaagTTTACACTCTGAGTTCTTGGAATTAGTTTCAAAATGTAAAGTATTTCTCAGGGATTTTCAAAAATGTAGTAGTTTGTTatgcaaataaattattttatcatGTGGAATGTAAGCTTGTCAGATGTATTTTCAAACAATGCAAAGCTACTCAATAAAATTGGTCTGTGATCTGAA
>TCONS_00064007
AGACACTCTCACCTactctcacttacacacacaaacacatgctcaccTTCTCTCACTTAGCAGATACATGCACCTACTCATGTGCGATCACACAAAAAACACTTTCTTTTGATAACTTCTGTGAGCTCCTGCAGAGCGCGGCACAGTGTAAGAAGAAACACACGCTGGTATGCCCAGACTTCTCCAGTACTGGTGTGTGTCCACGTGGTTCCAAATGCAAACTGCACCACAGACAGAGCAAGAAACGTACTGGCTCTAATGCAAGCTATGGAGCGGCCAAGAAAGCTTGTACAAGAGATGTTTTAAGGAGCTCGGATGCAGCTCAGACTCAGTCTTCAGAGTCCACACTGGCAGATGAAGGCTCATCGTGCTCTCGTCCAGAGAAGTTGCCCTCCTTCATCTCTTTGTCCAGCTCTCCTGATGGCTCAGAAAACCCTGATACCCCCAAAATCCCTCCTGCTACAGGCCCACAGGCCAAAGGAAAGACACTACATATCAAGCCACGATTTCTCTCTACAACACAGACAGACCCCTCGCCAAAGGAGGGCTGATGGTGGGTGTTTTAATCCGTAATtaacaatgaaaaatatttcTTCATTCTTATTTTAGAAATGACCCTGCTTCACAGATAGTTTACAGgcgtctttaaattacactttcataAACTTTTTGGTCTCAAGACACATTTAGATTCAAAGTTCTGAGATGCAAATTCTAAGAATTGATAATACAGATTGTTTAAAATACCTCGAA
>TCONS_00064008
TACATCTAGTTCAGCTTCAAGGACGACCCATAAGAGCACTGTGTATCGGTGGACTGCTAACAACAATGGCCAAAAGGGGGAAAAGGGATCTACCTTGTCTCCTAATATCCCTGCTACAGCCGCATTGTCAGTTGGCGCCTTTAAGCTGAGGAGTCGAACCAAGATCATCAGACGATCTCCTAGCAATCCCTGCTTAGAGAGAAGACACAGTCCCAATGTGCAGACTTTAAAGAGTCGGTATTCCTTGTGGAGGAGGACACACACTCAGGTGAAGAGTCCAACCAGTATTAAGCGAGCACAGCCCAAAGTGCTGGTTTCATTTGGCAGGCACAAGCTCCGTCGCCTCTCTCTCACCTCCACCTCATTAGGGACCTCAAGATCAGGTCAGTTACTATGACTGCACATTCACCAAATGCTTTGCAACTCTCAAATCACAATGCAGCTCCACCTCTGTCTTTTTAAACGCACAGATTGTTTTTACCCCCTCTGTGACTAATTGGCGTAATTAGTAATTAACACAAAACAACCTCTGGAAATTCATTATCGCTGCTTGGTTTGTATTCCTCAGAGAGGGGTTGAGATGGGCTTTATGTTCCCATAGAAACATAAAGATGCAGCAAAGATGAACAGTACAGTGGGTACTGTTGTGAAAGTTTTAATGTAGATGAGATCATAGAAATCTTTCTTTGAGTCTTCCTGTACTGTTGAAATCCGTAGAATACACAATGCCGTCATGTGTGCAAATATGTATGCTATGCAATATATGTAATCCTACAGTAGGTTATGCCTCACATC

Function

symbol description
zc3h3 Predicted to enable metal ion binding activity. Predicted to be active in nucleus. Orthologous to human ZC3H3 (zinc finger CCCH-type containing 3).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9399 Predicted to enable metal ion binding activity. Predicted to be active in nucleus. Orthologous to human ZC3H3 (zinc finger CCCH-type containing 3).

Ensembl:

ensembl_id ENSDARG00000090751

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064006 False 3528 mRNA 0.45 12 32717438 32834385
TCONS_00064007 False 753 mRNA 0.44 4 32717647 32726848
TCONS_00064008 True 795 lncRNA 0.44 2 32829516 32831650

Neighbor

gene id symbol gene type direction distance location
XLOC_032947 mafaa coding downstream 14121 32699359 ~ 32703317 (-)
XLOC_032946 NA coding downstream 30052 32687002 ~ 32687386 (-)
XLOC_032945 LO017955.2 coding downstream 124646 32573996 ~ 32592792 (-)
XLOC_032944 NA coding downstream 300685 32415076 ~ 32416753 (-)
XLOC_032943 usp1 coding downstream 305711 32394502 ~ 32411727 (-)
XLOC_032949 adcyap1r1a coding upstream 132365 32966750 ~ 33023745 (-)
XLOC_032950 si:dkey-170g13.2 coding upstream 236381 33070766 ~ 33075576 (-)
XLOC_032951 tspan1 coding upstream 270159 33104544 ~ 33129312 (-)
XLOC_032952 NA coding upstream 356197 33190582 ~ 33210388 (-)
XLOC_032953 CR933860.1 coding upstream 608949 33443334 ~ 33443455 (-)
XLOC_032940 NA non-coding downstream 520613 32195808 ~ 32196825 (-)
XLOC_032933 NA non-coding downstream 967654 31745291 ~ 31749784 (-)
XLOC_032955 CR855206.1 non-coding upstream 891662 33726047 ~ 33726148 (-)
XLOC_032962 NA non-coding upstream 1324232 34158617 ~ 34177898 (-)
XLOC_032964 CR385041.1 non-coding upstream 1809868 34644253 ~ 34644370 (-)

Expression


Co-expression Network