G1395053 (ift122)


Basic Information

Item Value
gene id G1395053
gene name ift122
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 59399488 ~ 59404307 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1593106
GCTGAATAGATGAAGGGCTGTTTGCAGTTGATACACACACTGCCCTGGCTGTTCAGCAGGGGGTTGTTGGTGGAGCAGCGGTAACACATGGGGATCAGGTCCTGggttacacacatatacacatttgTGAAAATACACAAAGTATAACATACACGGTCCACTAGAACTTTAAAAAAGTAAATATACACAGACACGCATGTATGCATGCAAACTCACACCTCATTGTCGTGGTATGGTTTGGAGCGGACGGTAAGGCTGCCCAGATCCATTGACTCCTGGAAGCGAGAGGGAACGTGGAGTTCCTGGAGCTTCTCATAGGCATGTCTGGCTAGTTTAAACGCTCCCAGGGTTCTGCTCTGCTTGGCCAACGCATAAAGAGTGTTAACTTTGGAGATGCCCAGTGGCACGTCCTTGGTGAGGTTGTGTAGGAGGTACCTGGAGATGTTAAAGAGCGTCTCAGGCATATGGGAGCTAAAGGGTTCATCTGTGTAACGCTGTATTGAGTGGTAAACATGGTAGAGCTCAGCCAGGTGCTGGAAACGCTTGAACTTCTTCAgcatctcctccttcctctcctcgttttCCCTAGCGATGTCCAGACACTGCATAGAGAGCATCCAGTAATAATATGCTGCGTCATTGAACCTGCTCTCCACCACGGCATTGTGGGTAAGCTGTTCCAACACCTTCACAGCCTCGCTCTGTCGGCCCGCCTTGTGGA

Function

symbol description
ift122 Involved in animal organ development and regulation of smoothened signaling pathway. Acts upstream of or within several processes, including melanosome transport; opsin transport; and photoreceptor cell maintenance. Predicted to be located in ciliary basal body. Predicted to be part of intraciliary transport particle A. Predicted to be active in non-motile cilium. Is expressed in several structures, including nervous system; neural plate; neural rod; pronephric duct; and pronephric mesoderm. Used to study retinal degeneration. Human ortholog(s) of this gene implicated in cranioectodermal dysplasia 1. Orthologous to human IFT122 (intraflagellar transport 122).

NR:

description
PREDICTED: intraflagellar transport protein 122 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1593106 True 721 lncRNA 0.50 4 59399488 59404307

Neighbor

gene id symbol gene type direction distance location
LOC110492425 LOC106566615 coding downstream 193344 59175934 ~ 59206144 (-)
LOC118939564 NA coding downstream 373362 59019837 ~ 59051938 (-)
LOC110492420 NA coding downstream 502523 58886676 ~ 58896965 (-)
LOC118939563 cf105 coding downstream 521986 58871749 ~ 58877502 (-)
LOC110492419 LOC106566607 coding downstream 528697 58865549 ~ 58870791 (-)
plxnd1 LOC106566625 coding upstream 9705 59413470 ~ 59538798 (-)
LOC110492431 LOC106566626 coding upstream 137080 59541387 ~ 59640728 (-)
mrps25 mrps25 coding upstream 341069 59745376 ~ 59752581 (-)
nr2c2 nr2c2 coding upstream 357497 59761804 ~ 59775363 (-)
wdr46 wdr46 coding upstream 384257 59788564 ~ 59795744 (-)
G1395015 NA non-coding downstream 66372 59331057 ~ 59333116 (-)
G1394999 LOC100136012 non-coding downstream 93734 59305455 ~ 59305754 (-)
G1394997 NA non-coding downstream 96696 59302351 ~ 59302792 (-)
G1394993 NA non-coding downstream 104367 59294815 ~ 59295121 (-)
G1394937 NA non-coding downstream 106157 59293108 ~ 59293331 (-)
G1395255 NA non-coding upstream 52688 59456995 ~ 59457801 (-)
G1395262 NA non-coding upstream 72161 59476468 ~ 59477513 (-)
G1395330 NA non-coding upstream 193988 59598295 ~ 59601453 (-)
G1395340 NA non-coding upstream 237913 59642220 ~ 59642533 (-)
G1394978 LOC106566621 other downstream 42639 59354200 ~ 59356849 (-)
G1394768 LOC106566610 other downstream 286591 59111372 ~ 59112897 (-)
LOC110491124 LOC106566606 other downstream 552472 58836641 ~ 58847057 (-)
G1394341 NA other downstream 652189 58746870 ~ 58747299 (-)
G1394067 NA other downstream 971375 58424458 ~ 58428113 (-)
G1396467 NA other upstream 1150449 60554756 ~ 60582035 (-)
LOC118939463 NA other upstream 1257249 60661556 ~ 60672085 (-)
G1396543 NA other upstream 1289302 60693609 ~ 60694036 (-)
abhd6b LOC106566659 other upstream 1348798 60753006 ~ 60758788 (-)
G1398619 NA other upstream 3330436 62734743 ~ 62735569 (-)

Expression


Co-expression Network