G1395330


Basic Information

Item Value
gene id G1395330
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 59598295 ~ 59601453 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1593435
AGCAGTGTGTTGCTGGTGTGTTACAGACTGTTCCAGTGTGTTGAGTGCTAGTATTAGCTGCGTTAATAGCCATCTGTAATGTGGCTggtgtgttgtatagtgtgttgctggtgtgttgtatagtgtgtaCTGGGTAGGTAGTGTGTTGCTggtgtgttgtatagtgtgtaCTGGGTAGGTAGTGTGTTGCTggtgtgttgtatagtgtgtaCTGGGTAGGTAGTGTGTTGCtggtgtgttgtatagtgtttaCTGGGTAAGCAGTGTGTTGCTGGTGTGTTACAGACTGTGATCTTGGCTGTTCCAGTGTGTTGAGTGCTAGTATTAGCTGCGTTAATAGCCATCTGTAATGTGGCtggtgtgttgtatagtgtttaCTGGGTAGGTAGTGTGTTGCtggtgtgttgtatagtgtttaCTGGGTAAGCAGTGTGTTGCTggtgtgttgtatagtgtgtaCTGGGTAGGTagtgtgttgtatagtgtgtaCTGGGTAGGTagtgtgttgtatagtgtgtaCTGGGTAGGTAGTGTGTTGCTggtgtgttgtatagtgtgtaCTGGGTAGGTAGTGTGTTGCTGGTGTGTTACAGACTGTGATCTTGGCTGTTCCAGTGTGTTGAGTGCTAGTATTAGCTGCGTTAATAGCCATCTGTAATGTGGCTggtgtgttgtatagtgtgttGCTGGTGTGTTACAGACTGTTCCAGTGTGTTGAGTGCTAGTATTAGCTGCGTTAATAGCCATCTGTAATGTGGCTggtgtgttgtatagtgtgttGCTGGTGTGTTACAGACTGTTCCAGTGTGTTGAGTGCTAGTATTAGCTGCGTTAATAGCCATCTGTAATGTGGCTGGTGTGTTACAGACTGTTCCAGTGTGTTGCTGGTGTGTTACAGACTGTTCCAGTGTGTTGAGTGCTAGTATTAGCTGCGTTAATAGCCATCTGTAATGTGGCTGGTGTGTTACAGACTGTT
>TU1593442
TAGAGATCCTAATCTGATATAAGAGGACAGTTCATGAAAAATTAGACTTGAAAATGTTTGGGTCAAATGGCAGTTTCGTGAGAATGAcccacctgaattcacctggtcagtctatgtcatggaaagagcaggtgttcctaatgttttgtacactcagtatatattaATGCACATTTAGTGTTTAGTCCGCTGCCCTCCACGTGTCCTgcatgttgtttatcttatccTCTGTCTTAAAGTGCTGTAATGCAGGACAACGCTTACTGATTAAGTGAAGTTAAAGGTATGACTGTTGTACAATATGTACTGGGTAGGTAGTGTGTTGCTggtgtgttgtatagtgtgttGCTGGTgtgttgctggtgtgttgtatagtgtgtaCTGGGTAGGTAGTGTGTTGCTggtgtgttgtatagtgtgtaCTGGGTAGGTagtgtgttgtatagtgtgtaCTGGGTAGGTagtgtgttgtatagtgtgtaCTGGGTAGGTagtgtgttgtatagtgtgtaCTGGGTAGGTAGTGTGTTGCTggtgtgttgtatagtgtgtaCTGGGTAGGTAGTGTGTTGCTGGTGTGTTACAGACTGTGATCTTGGCTGTTCCAGTGTGTTGAGTGCTAGTATTAGCTGCGTTAATAGCCATCTGTAATGTGGCTggtgtgttgtatagtgtgttGCTGGTGTGTTACAGACTGTTCCAGTGTGTTGAGTGCTAGTATTAGCTGCGTTAATAGCCATCTGTAATGTGGCTggtgtgttgtatagtgtgttGCTGGTGTGTTACAGACTGTTCCAGTGTGTTGAGTGCTAGTATTAGCTGCGTTAATAGCCATCTGTAATGTGGCTGGTGTGTTACAGACTGTTCCAGTGTGTTGCTGGTGTGTTACAGACTGTTCCAGTGTGTTGAGTGCTAGTATTAGCTGCGTTAATAGCCATCTGTAATGTGGCTGGTGTGTTACAGACTGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1593435 False 976 lncRNA 0.45 3 59598295 59599966
TU1593442 True 969 lncRNA 0.43 5 59598295 59601453

Neighbor

gene id symbol gene type direction distance location
plxnd1 LOC106566625 coding downstream 59497 59413470 ~ 59538798 (-)
LOC110492425 LOC106566615 coding downstream 392151 59175934 ~ 59206144 (-)
LOC118939564 NA coding downstream 572169 59019837 ~ 59051938 (-)
LOC110492420 NA coding downstream 701330 58886676 ~ 58896965 (-)
LOC118939563 cf105 coding downstream 720793 58871749 ~ 58877502 (-)
mrps25 mrps25 coding upstream 143923 59745376 ~ 59752581 (-)
nr2c2 nr2c2 coding upstream 160351 59761804 ~ 59775363 (-)
wdr46 wdr46 coding upstream 187111 59788564 ~ 59795744 (-)
LOC110492442 LOC106566634 coding upstream 261013 59862466 ~ 59867536 (-)
LOC110492455 LOC106566637 coding upstream 279679 59881132 ~ 59911772 (-)
G1395262 NA non-coding downstream 120782 59476468 ~ 59477513 (-)
G1395255 NA non-coding downstream 140494 59456995 ~ 59457801 (-)
G1395053 ift122 non-coding downstream 193988 59399488 ~ 59404307 (-)
G1395015 NA non-coding downstream 265179 59331057 ~ 59333116 (-)
G1395340 NA non-coding upstream 40767 59642220 ~ 59642533 (-)
G1395342 NA non-coding upstream 42142 59643595 ~ 59643821 (-)
G1395354 NA non-coding upstream 59399 59660852 ~ 59661061 (-)
G1395375 NA non-coding upstream 78717 59680170 ~ 59680370 (-)
G1395378 NA non-coding upstream 80026 59681479 ~ 59681842 (-)
G1394978 LOC106566621 other downstream 241446 59354200 ~ 59356849 (-)
G1394768 LOC106566610 other downstream 485398 59111372 ~ 59112897 (-)
LOC110491124 LOC106566606 other downstream 751279 58836641 ~ 58847057 (-)
G1394341 NA other downstream 850996 58746870 ~ 58747299 (-)
G1394067 NA other downstream 1170182 58424458 ~ 58428113 (-)
G1396467 NA other upstream 953303 60554756 ~ 60582035 (-)
LOC118939463 NA other upstream 1060103 60661556 ~ 60672085 (-)
G1396543 NA other upstream 1092156 60693609 ~ 60694036 (-)
abhd6b LOC106566659 other upstream 1151652 60753006 ~ 60758788 (-)
G1398619 NA other upstream 3133290 62734743 ~ 62735569 (-)

Expression


Co-expression Network