XLOC_032952


Basic Information

Item Value
gene id XLOC_032952
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 33190582 ~ 33210388 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065183
AGATGCAGCTGATAGCCTTGACAAAATGTCAAACAGTGATGAGATAAAGCGATAGTTGAGATCAGGTAAGGACCTGCCACAGCTTCCTCTCGGGCCGTCCAACAACACCTCTATTTGCTATGCAAGACAGGTCATCGCTGTTCTCCCAGGAGACCAGGGCAGGGAACAAGATGGAAGATTGAAGAGCAGGGGAAGTGAGGAAAACAGCAAGTGAGGGCAAGAGAAGTGGGAGGGACAGGAAATATGAAAGTTCTCCCTACCTATTTGTACCATGTCGACACTATGTATTACCTCGCCGAAATAGATTCTAATGCCACTGAGAGACTGAGGACTTAATCTGCTGTCAATTTGATACAGCAAGGGGGCCCTCGCCCTCATTTTTTAACCCCACATCCCGCTGAGCTGCGAGAGTTAATAGCCTCCCAGCAGCAGGAGCCCAGACAGGGGTGAGGAAAGAACGGGACAGGAGGCGAATGAAGAAAGATGGAAGAAAAGACTCGCTTGGTCATTATGCATCCTCTGTAGCTTCCAGGGATCATCTTTGCACACATTTTGACATTGTTCGGTGGAGTCATCGATCAGGACTTGAAGCACTCAGAGTTGTACCGATGCCTCTGAACAGGTGAAGTTGCAGGAGAATAAAAGAAAGGATGGTGATTGAAGATGATGATCAAGACCATTCCGGGTCACTTTTAATCAAACTCCTGCCCCATACTGCGCCTGCATgacactgatgatgatgatgatgatgacgatggtGTTGACGattatgatgatgttgatgatgatgccCACCATTGGGGAAAGTCTGTCCCTTTGGGGCGGCATGCTGACAATTTCTGAATGCCCAGGAACGGTCAATCAAACCTGACAACTGAGTTCCTGTCTCGCACAGATGGCTTTACGCCATATACCCGGTTCAATCCCCTGTGCTCCAAATTAAAAACCAGAACCTCTCAGCTCTGCTTGATGGGATTGAGAGCTTTGAAAACACCCTTAAGGTGATAGTGGATTGGTCTGTTCACTccctctttctcacacacacacaaagagctgGGCAGAGCGGTAACCTAACAGTGGTACAGCAATAAAGTCATCAAAAGCCCCCTGAAGTCCTATTcataattaaagtttttaataacaGCTGTCGTGGGTATGGGAAGGCCAACGGGTACTTGGTTGACCTTTCCGAAAGTGATTCCCTGAGTTATGTTCTGTAATCAAAAGTGGATCACAAATCAACAAAAATGAAGGTTACACCACTCACAAACACATTGAGTTTTGTGCTATGTTGTTAGTTTTAAATGGGCTCTTGAGCTCAATCTGGGAGACTGCTTGTTTGAAAGCGTCCCGTTTGCCCCTATGAaaccttgagaaaaaaaaagaaacaacaaaaattaatttcacgtttaaggtctgtttacaGGGCACTATTTTAAACAAAGACACTTGCTAagcattttttattgaaaatagcaTGTTGGGGCCTTGCAAATGCAAACTTTTACAAAATGGGTTtacagaattattttattttttacagatcGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065183 True 1548 lncRNA 0.45 2 33190582 33210388

Neighbor

gene id symbol gene type direction distance location
XLOC_032951 tspan1 coding downstream 61270 33104544 ~ 33129312 (-)
XLOC_032950 si:dkey-170g13.2 coding downstream 115006 33070766 ~ 33075576 (-)
XLOC_032949 adcyap1r1a coding downstream 166837 32966750 ~ 33023745 (-)
XLOC_032948 zc3h3 coding downstream 356197 32717438 ~ 32834385 (-)
XLOC_032947 mafaa coding downstream 487265 32699359 ~ 32703317 (-)
XLOC_032953 CR933860.1 coding upstream 232946 33443334 ~ 33443455 (-)
XLOC_032954 mast2 coding upstream 453278 33663666 ~ 33871055 (-)
XLOC_032955 CR855206.1 coding upstream 515659 33726047 ~ 33726148 (-)
XLOC_032956 tmem69 coding upstream 664749 33875137 ~ 33878665 (-)
XLOC_032957 nasp coding upstream 700766 33911154 ~ 33916788 (-)
XLOC_032946 NA non-coding downstream 503196 32687002 ~ 32687386 (-)
XLOC_032945 LO017955.2 non-coding downstream 597790 32573996 ~ 32592792 (-)
XLOC_032944 NA non-coding downstream 773829 32415076 ~ 32416753 (-)
XLOC_032940 NA non-coding downstream 993757 32195808 ~ 32196825 (-)
XLOC_032933 NA non-coding downstream 1440798 31745291 ~ 31749784 (-)
XLOC_032962 NA non-coding upstream 948229 34158617 ~ 34177898 (-)
XLOC_032964 CR385041.1 non-coding upstream 1433865 34644253 ~ 34644370 (-)
XLOC_032965 NA non-coding upstream 1439407 34649795 ~ 34652139 (-)

Expression


Co-expression Network