XLOC_032952


Basic Information

Item Value
gene id XLOC_032952
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 33190582 ~ 33210388 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065183
AGATGCAGCTGATAGCCTTGACAAAATGTCAAACAGTGATGAGATAAAGCGATAGTTGAGATCAGGTAAGGACCTGCCACAGCTTCCTCTCGGGCCGTCCAACAACACCTCTATTTGCTATGCAAGACAGGTCATCGCTGTTCTCCCAGGAGACCAGGGCAGGGAACAAGATGGAAGATTGAAGAGCAGGGGAAGTGAGGAAAACAGCAAGTGAGGGCAAGAGAAGTGGGAGGGACAGGAAATATGAAAGTTCTCCCTACCTATTTGTACCATGTCGACACTATGTATTACCTCGCCGAAATAGATTCTAATGCCACTGAGAGACTGAGGACTTAATCTGCTGTCAATTTGATACAGCAAGGGGGCCCTCGCCCTCATTTTTTAACCCCACATCCCGCTGAGCTGCGAGAGTTAATAGCCTCCCAGCAGCAGGAGCCCAGACAGGGGTGAGGAAAGAACGGGACAGGAGGCGAATGAAGAAAGATGGAAGAAAAGACTCGCTTGGTCATTATGCATCCTCTGTAGCTTCCAGGGATCATCTTTGCACACATTTTGACATTGTTCGGTGGAGTCATCGATCAGGACTTGAAGCACTCAGAGTTGTACCGATGCCTCTGAACAGGTGAAGTTGCAGGAGAATAAAAGAAAGGATGGTGATTGAAGATGATGATCAAGACCATTCCGGGTCACTTTTAATCAAACTCCTGCCCCATACTGCGCCTGCATgacactgatgatgatgatgatgatgacgatggtGTTGACGattatgatgatgttgatgatgatgccCACCATTGGGGAAAGTCTGTCCCTTTGGGGCGGCATGCTGACAATTTCTGAATGCCCAGGAACGGTCAATCAAACCTGACAACTGAGTTCCTGTCTCGCACAGATGGCTTTACGCCATATACCCGGTTCAATCCCCTGTGCTCCAAATTAAAAACCAGAACCTCTCAGCTCTGCTTGATGGGATTGAGAGCTTTGAAAACACCCTTAAGGTGATAGTGGATTGGTCTGTTCACTccctctttctcacacacacacaaagagctgGGCAGAGCGGTAACCTAACAGTGGTACAGCAATAAAGTCATCAAAAGCCCCCTGAAGTCCTATTcataattaaagtttttaataacaGCTGTCGTGGGTATGGGAAGGCCAACGGGTACTTGGTTGACCTTTCCGAAAGTGATTCCCTGAGTTATGTTCTGTAATCAAAAGTGGATCACAAATCAACAAAAATGAAGGTTACACCACTCACAAACACATTGAGTTTTGTGCTATGTTGTTAGTTTTAAATGGGCTCTTGAGCTCAATCTGGGAGACTGCTTGTTTGAAAGCGTCCCGTTTGCCCCTATGAaaccttgagaaaaaaaaagaaacaacaaaaattaatttcacgtttaaggtctgtttacaGGGCACTATTTTAAACAAAGACACTTGCTAagcattttttattgaaaatagcaTGTTGGGGCCTTGCAAATGCAAACTTTTACAAAATGGGTTtacagaattattttattttttacagatcGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065183 True 1548 lncRNA 0.45 2 33190582 33210388

Neighbor

gene id symbol gene type direction distance location
XLOC_032951 tspan1 coding downstream 61270 33104544 ~ 33129312 (-)
XLOC_032950 si:dkey-170g13.2 coding downstream 115006 33070766 ~ 33075576 (-)
XLOC_032949 adcyap1r1a coding downstream 166837 32966750 ~ 33023745 (-)
XLOC_032948 zc3h3 coding downstream 356197 32717438 ~ 32834385 (-)
XLOC_032947 mafaa coding downstream 487265 32699359 ~ 32703317 (-)
XLOC_032953 CR933860.1 coding upstream 232946 33443334 ~ 33443455 (-)
XLOC_032954 mast2 coding upstream 453278 33663666 ~ 33871055 (-)
XLOC_032955 CR855206.1 coding upstream 515659 33726047 ~ 33726148 (-)
XLOC_032956 tmem69 coding upstream 664749 33875137 ~ 33878665 (-)
XLOC_032957 nasp coding upstream 700766 33911154 ~ 33916788 (-)
XLOC_032946 NA non-coding downstream 503196 32687002 ~ 32687386 (-)
XLOC_032945 LO017955.2 non-coding downstream 597790 32573996 ~ 32592792 (-)
XLOC_032944 NA non-coding downstream 773829 32415076 ~ 32416753 (-)
XLOC_032940 NA non-coding downstream 993757 32195808 ~ 32196825 (-)
XLOC_032933 NA non-coding downstream 1440798 31745291 ~ 31749784 (-)
XLOC_032962 NA non-coding upstream 948229 34158617 ~ 34177898 (-)
XLOC_032964 CR385041.1 non-coding upstream 1433865 34644253 ~ 34644370 (-)
XLOC_032965 NA non-coding upstream 1439407 34649795 ~ 34652139 (-)

Expression

Expression of XLOC_032952 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: -0.5 to 0.5.
End of interactive chart.

Expression of XLOC_032952 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: -0.5 to 0.5.
End of interactive chart.

Co-expression Network