G1395635


Basic Information

Item Value
gene id G1395635
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 59818833 ~ 59820458 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1593778
TTTCAGGCAAATTGAATAAAGTATAATATTTTAAGTACAAGTACATGAACATCAATGTATTACGTTTAGTCATACTGTATACGAGTAGGAATTGTTACAGTTTCAAAGTATGTATATTTTTgaaacagaataaaacaatgcTTGATGCTTAATAATGCTCTTCTCCATTTACATATTCATTACTGTATTGACTCTCAcgtatcacactttcacaaaaaacatgaagacatggctaaaggtcaatcagatttgtgaacataatccctagctgtgtattgccgctttccattttgtctgttgtctgtagcttgtgaggtgtggaaacactttgttgcttttatggattttgtcttgttgctttttgtgccatgttgctctgtctgtatgctacgtcttgcttgtcctatgttgctctgcgtttGCTCACTGCTCATTGATTGTATGTATTGTAATTGCTTTTAATAACCTGctcagggactgcggttgaaaattagccggctggctaaaccggcacttttactgaaacgttaattaatgtgcactgtccctgtaaaaaaaatATCCTCAAACAAACATCAATGTATTACATTTAgtcatactgtatacagtatacgaGTAGGAAATGTTACAGTTTCAAAGTATGTCTATTTTTgaaacagaataaaacaatgtTTGATGCTTAATAATGCTCTTCTCCATTTACATATTCATTACTGTATCGACTCTCACTGTTTTTTTCTCAGACACTGAAAAACAGACCAGGCAAGAGGATTTACAAATAGCTCACATTGCTAAGAGTGTACTGTGCAGTATGTCctcattttatttttgtttttagtTCTCAACCTATAGCTCATATCTCAAAGTAGCATCAATCATTCTCAAAAAATTATATAAGACACTTCATGATCTTTCTCATTCACACTCCAGGATATGACACGATATGATCCTCACTCTGTATATTTCAACACTATAGCCCAGTTAACTGTGGACCAATGGAAGACTGGCACCCCAGCCGAGCCTATCGTAAGTCTATGTGCGCCAAATAAACAATCAATCAACCTGACCACAAACAATCAGACAATCAACCTGACCACAACCCCTAGACTACAGTGCGGAACTGTACGGTGgtgttcttcatcttcttcttatAGTCTTCATCAAACTGTTCACTCTGGGCTACAGTGAAATGGTTCTTCCAGTCACCAACCTTTCCTTTTTCGCATGAATGGTGAGATCTTGAAATCCATGATTGGAACGGTGGAATAGTTGGCCATGCTGTTCTTCTTCATAGTATCAAACtgcactcctcctctcaccctctccttctcctctgctgaAGGAGACAAACCTAGGAAGGAGCACAGCCTGTCCAGCTCTCTCCCCgtatcctagaggaaaacataCAGTGGATACTGTACTTGTAGTATTATCTAAAAGTATTATCTGCCAGTCCATGTTGTCCTGCATCTGAGTGAGGACAATCCCTAGCCCAAAAGACGATGCATGT
>TU1593781
TTTCAGGCAAATTGAATAAAGTATAATATTTTAAGTACAAGTACATGAACATCAATGTATTACGTTTAGTCATACTGTATACGAGTAGGAATTGTTACAGTTTCAAAGTATGTATATTTTTgaaacagaataaaacaatgcTTGATGCTTAATAATGCTCTTCTCCATTTACATATTCATTACTGTATTGACTCTCAcgtatcacactttcacaaaaaacatgaagacatggctaaaggtcaatcagatttgtgaacataatccctagctgtgtattgccgctttccattttgtctgttgtctgtagcttgtgaggtgtggaaacactttgttgcttttatggattttgtcttgttgctttttgtgccatgttgctctgtctgtatgctacgtcttgcttgtcctatgttgctctgcgtttGCTCACTGCTCATTGATTGTATGTATTGTAATTGCTTTTAATAACCTGctcagggactgcggttgaaaattagccggctggctaaaccggcacttttactgaaacgttaattaatgtgcactgtccctgtaaaaaaaatATCCTCAAACAAACATCAATGTATTACATTTAgtcatactgtatacagtatacgaGTAGGAAATGTTACAGTTTCAAAGTATGTCTATTTTTgaaacagaataaaacaatgtTTGATGCTTAATAATGCTCTTCTCCATTTACATATTCATTACTGTATCGACTCTCACTGTTTTTTTCTCAGACACTGAAAAACAGACCAGGCAAGAGGATTTACAAATAGCTCACATTGCTAAGAGTGTACTGTGCAGTATGTCctcattttatttttgtttttagtTCTCAACCTATAGCTCATATCTCAAAGTAGCATCAATCATTCTCAAAAAATTATATAAGACACTTCATGATCTTTCTCATTCACACTCCAGGATATGACACGATATGATCCTCACTCTGTATATTTCAACACTATAGCCCAGTTAACTGTGGACCAATGGAAGACTGGCACCCCAGCCGAGCCTATCGTAAGTCTATGTGCGCCAAATAAACAATCAATCAACCTGACCACAAACAATCAGACAATCAACCTGACCACAACCCCTAGACTACAGTGCGGAACTGTACGGTGgtgttcttcatcttcttcttatAGTCTTCATCAAACTGTTCACTCTGGGCTACAGTGAAATGGTTCTTCCAGTCACCAACCTTTCTTTTCGCATGAATGGTGAGATCTTGAAATCCATGATTGGAACGGTGGAATAGTTGGCCATGCTGTTCTTCTTCATAGTATCAAACtgcactcctcctctcaccctctccttctcctctgctgaAGGAGACAAACCTAGGAAGGAGCACAGCCTGTCCAGCTCTCTCCCCgtatcctagaggaaaacataCAGTGGATACTGTACTTGTAGTATTATCTAAAAGTATTATCTGCCAGTCCATGTTGTCCTGCATCTGAGTGAGGACAATCCCTAGCCCAAAAGACGATGCATGT

Function

NR:

description
Cytosolic sulfotransferase 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1593778 False 1510 lncRNA 0.38 2 59818833 59820458
TU1593781 True 1508 lncRNA 0.38 2 59818833 59820458

Neighbor

gene id symbol gene type direction distance location
wdr46 wdr46 coding downstream 23089 59788564 ~ 59795744 (-)
nr2c2 nr2c2 coding downstream 43470 59761804 ~ 59775363 (-)
mrps25 mrps25 coding downstream 66252 59745376 ~ 59752581 (-)
LOC110492431 LOC106566626 coding downstream 178105 59541387 ~ 59640728 (-)
plxnd1 LOC106566625 coding downstream 280035 59413470 ~ 59538798 (-)
LOC110492442 LOC106566634 coding upstream 42008 59862466 ~ 59867536 (-)
LOC110492455 LOC106566637 coding upstream 60674 59881132 ~ 59911772 (-)
ogg1 ogg1 coding upstream 95742 59916200 ~ 59925485 (-)
LOC110492460 LOC106566640 coding upstream 121247 59941705 ~ 59946884 (-)
LOC110492462 NA coding upstream 138703 59959161 ~ 59961425 (-)
G1395456 NA non-coding downstream 88555 59730042 ~ 59730278 (-)
G1395408 NA non-coding downstream 114352 59704264 ~ 59704481 (-)
G1395403 NA non-coding downstream 119102 59699479 ~ 59699731 (-)
G1395394 NA non-coding downstream 124180 59694061 ~ 59694653 (-)
G1395384 NA non-coding downstream 131933 59686466 ~ 59686900 (-)
G1395656 NA non-coding upstream 1405 59821863 ~ 59822163 (-)
G1395657 NA non-coding upstream 3172 59823630 ~ 59825026 (-)
G1395659 NA non-coding upstream 23844 59844302 ~ 59844778 (-)
G1395667 NA non-coding upstream 34470 59854928 ~ 59878726 (-)
G1395638 qars non-coding upstream 83066 59903524 ~ 59929197 (-)
G1394978 LOC106566621 other downstream 461984 59354200 ~ 59356849 (-)
G1394768 LOC106566610 other downstream 705936 59111372 ~ 59112897 (-)
LOC110491124 LOC106566606 other downstream 971817 58836641 ~ 58847057 (-)
G1394341 NA other downstream 1071534 58746870 ~ 58747299 (-)
G1394067 NA other downstream 1390720 58424458 ~ 58428113 (-)
G1396467 NA other upstream 734298 60554756 ~ 60582035 (-)
LOC118939463 NA other upstream 841098 60661556 ~ 60672085 (-)
G1396543 NA other upstream 873151 60693609 ~ 60694036 (-)
abhd6b LOC106566659 other upstream 932647 60753006 ~ 60758788 (-)
G1398619 NA other upstream 2914285 62734743 ~ 62735569 (-)

Expression


Co-expression Network