G1395657


Basic Information

Item Value
gene id G1395657
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 59823630 ~ 59825026 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1593804
ACGTAAAAAATATTaaattatcttagattaattcagactatttGAGGAAGTGTGCTGGCTGTGTTTTTTATATGTCATCTGGTGATTCTTAGTAACTATACTGTTCTCTTTGAAGTAGAAAGAAAAATGTATATAAGTTGACATATTAGACATGTGTAAGCAGAATGAAGGCTGAAGCCCATGTAAGTGTACAAAGCTGCAACAACAGAGTTAAACATTAAACATGTAAAAAACTGAACGCAAGCAGAATCTGTGTGGATGAGGCATGGTAGATTAACAAAACGTGACTGGTCTGGGTCATGGGCCATCTTGTGAAGGCTATTGGACATGCACATGGGTTAATCATACATAGACAACATCGGCCTGAACTTGTGAAGACCTTTGACAGGAACATTAGCTAATCAGTGATAGGCACCAGTAGGAGTATGCATGTCACGCCACCAATAGAATCTATGCCTCAATGTCTGAGCCAATAAGAGAATGGAAACTAAGTAAGACAACAAGATTCACAAAGTGGAGTGATGATGTTATGTAAGGGTAAAACTGTATAAAACCAAGCACTAAGAATGAAGAGTCAGTTCTTTCATGGAATTGCTTGGCTTTGTTACTCTCTGTAATAAAGTCTATTTGAATTCACAAGCTCCGGTATCTGATAAGTATTTGATTCAGTATTTCCCACAACACCATCTCAAGAGGACAAACAGTAGAATTGCTGCTTgtttcttgtttttcaagcgaATGGCTTTTTAAGGGAGAATGCGAGGCTTGCTTCGCCTCGCTGAGTTCTGCTAGGAACAGACCAAACCTGACCTGAACCCAAACATATTCAATCCCCCCCCTTCcatcaaagcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacctgataggCTACTGAATGGGCAGTGTCCTTGGGTAGATAGTGTCTTTGTCTTTTCTGTGCCCTTAAACCTCCTGCATTGTCCTcaacacactgtctaaatcacTTTAGTGTCTAATTCTTTCCTGACCAGAGACTAGGCTGCAGAGTATGTGCCTGGGCACTGTGTCAAGCTTGTACACATCTTTCACCTACTGCATCAACCTTCTTTATCGCCAGGTTGCTTGTTTGACACCAACAATCAATACAAAAAGATACTCTGTAATGTTACTTGGTAAGGAGGTCTGGTGAGGAGGTCAGATGTCACAGGTGAATGCTCATACAGTAAATGAGGAGATAATAACCAAGCATTGGCTACCTCAACATAAAGCCTCATCAGGCACCACATGCATTTATTTAAGTATCATTACAGATGCTGGCAGTGTAGAAGTTTAACATTTAACATCACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1593804 True 1397 lncRNA 0.41 1 59823630 59825026

Neighbor

gene id symbol gene type direction distance location
wdr46 wdr46 coding downstream 27886 59788564 ~ 59795744 (-)
nr2c2 nr2c2 coding downstream 48267 59761804 ~ 59775363 (-)
mrps25 mrps25 coding downstream 71049 59745376 ~ 59752581 (-)
LOC110492431 LOC106566626 coding downstream 182902 59541387 ~ 59640728 (-)
plxnd1 LOC106566625 coding downstream 284832 59413470 ~ 59538798 (-)
LOC110492442 LOC106566634 coding upstream 37440 59862466 ~ 59867536 (-)
LOC110492455 LOC106566637 coding upstream 56106 59881132 ~ 59911772 (-)
ogg1 ogg1 coding upstream 91174 59916200 ~ 59925485 (-)
LOC110492460 LOC106566640 coding upstream 116679 59941705 ~ 59946884 (-)
LOC110492462 NA coding upstream 134135 59959161 ~ 59961425 (-)
G1395656 NA non-coding downstream 1467 59821863 ~ 59822163 (-)
G1395635 NA non-coding downstream 3172 59818833 ~ 59820458 (-)
G1395456 NA non-coding downstream 93352 59730042 ~ 59730278 (-)
G1395408 NA non-coding downstream 119149 59704264 ~ 59704481 (-)
G1395403 NA non-coding downstream 123899 59699479 ~ 59699731 (-)
G1395659 NA non-coding upstream 19276 59844302 ~ 59844778 (-)
G1395667 NA non-coding upstream 29902 59854928 ~ 59878726 (-)
G1395638 qars non-coding upstream 78498 59903524 ~ 59929197 (-)
G1395691 NA non-coding upstream 107846 59932872 ~ 59933137 (-)
G1395693 LOC106566639 non-coding upstream 111516 59936542 ~ 59936892 (-)
G1394978 LOC106566621 other downstream 466781 59354200 ~ 59356849 (-)
G1394768 LOC106566610 other downstream 710733 59111372 ~ 59112897 (-)
LOC110491124 LOC106566606 other downstream 976614 58836641 ~ 58847057 (-)
G1394341 NA other downstream 1076331 58746870 ~ 58747299 (-)
G1394067 NA other downstream 1395517 58424458 ~ 58428113 (-)
G1396467 NA other upstream 729730 60554756 ~ 60582035 (-)
LOC118939463 NA other upstream 836530 60661556 ~ 60672085 (-)
G1396543 NA other upstream 868583 60693609 ~ 60694036 (-)
abhd6b LOC106566659 other upstream 928079 60753006 ~ 60758788 (-)
G1398619 NA other upstream 2909717 62734743 ~ 62735569 (-)

Expression


Co-expression Network