G1395977


Basic Information

Item Value
gene id G1395977
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 60072420 ~ 60132053 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1594160
TCTTTTGCAAAGTGCGATTTATTACGTTGCCTTGATTACGTGTCTCTACATTCACAAATAAGCCAGTAACATATAGAATCCAACTGTAAAATATTTAAGATATTTTCCTTTCCTGTCTCGAGAAAGACAAAACATCTTGCACATCGACAGGGGTGGAATTGGGAGGGAATGAGTGGGAACAGAGTTCCCAAAGCGAAATAATTTGGACATGTAAAAATACAGAATCTGAACTATTTACATTGGTTAATTCCCAGAGTGATTATTTTCCAATTCCATCCCTGCACATTGTTACGTTAGACTCTCTTTACATATACATAAACAACTTTGTTGTGGGCTGCCCATCTGCAACTGTCTTTAGGTTGAACCAACTGGTTTGCAAAAATACAAGAGTTATTTATGTAGAAGT
>TU1594162
TCTTTTGCAAAGTGCGATTTATTACGTTGCCTTGATTACGTGTCTCTACATTCACAAATAAGCCAGTAACATATAGAATCCAACTGTAAAATATTTAAGATATTTTCCTTTCCTGTCTCGAGAAAGACAAAACATCTTGCACATCGACAGGGGTGGAATTGGGAGGGAATGAGTGGGAACAGAGTTCCCAAAGCGAAATAATTTGGACATGTAAAAATACAGAATCTGAACTATTTACATTGGTTAATTCCCAGAGTGATTATTTTCCAATTCCATCCCTGCACATTGTTACGTTAGACTCTCTTTACATATACATAAACAACTTTGTTGTGGGCTGCCCATCTGCAACTGTCTTTAGGTTGAACCAACTGGTTTGCAAAAATACAAGAGTTATTTCTGTAGACGTGAGCCTTTGTCGTTTCCGGGAGCAGAAGTCTTCTTTGTGGACGCTGGATCGCAGGGCCCACATTGGGGGCTCGTTTATGCAGGAGCCACGGAGCTGGAGGACACGGAGGAGGCCTCGGTCTTGGAGGCAGTGGTGGaggctccctcctcctcctcgaaGGGGTTCTTCCCACAGCACAGGGTGGTGATCATGCAGTTGCGGAACTGCTTGTTCATCAACACGTAGATGAGAGGGTTGTACAGGGACGAACTCTTGGCAAAGAATGCCGGAATTGTCATGAAGACAAAATAGCCATGCATGGAGGTGTACATCGTAGTGGTGAAGCCTCCGATTACCATGAAGAGATCGGCCACAGCCAGGTTCAGCAGGATGTAGTTCAGGGCGGTCCTCAGCTTTTTGTGCTCGATGGTGACGTAGAGTGTGAGGAAGTTGATGGGGAATCCGGTGAGGATGAGGAAGAACATGTAGGCAGCCATGAGTGAGTACGCCGCTGGGCTGACAAGGTAGTACTGGGGGTATTCATAGGGGTTCCTAACAATGCCAGTAGCATTGGACATAGGGACGTAGAAATCTGGTCCCTCTGTGCCGTTCATGGTTGCGGTCTTGCGGTGGCGATCAGCCCTTCTTCAGATGGTGTTCCGGctgtacagaaagagagatggaaagggtcCTTTCTACAAATGCACCCAGGAGGTCAGACTCCTGATTTTATAGGCACATCTTAAGGTGT

Function

NR:

description
rod opsin

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1594160 False 406 lncRNA 0.36 2 60072420 60132053
TU1594162 True 1136 lncRNA 0.48 2 60130372 60132053

Neighbor

gene id symbol gene type direction distance location
LOC110491132 LOC106566643 coding downstream 22911 59983280 ~ 60049509 (-)
LOC110492462 NA coding downstream 110995 59959161 ~ 59961425 (-)
LOC110492460 LOC106566640 coding downstream 125536 59941705 ~ 59946884 (-)
ogg1 ogg1 coding downstream 146935 59916200 ~ 59925485 (-)
LOC110492455 LOC106566637 coding downstream 160648 59881132 ~ 59911772 (-)
LOC110492464 NA coding upstream 2199 60134252 ~ 60137371 (-)
LOC110491133 LOC106566645 coding upstream 7076 60139129 ~ 60343362 (-)
LOC110491135 NA coding upstream 291292 60423345 ~ 60424658 (-)
LOC110492466 LOC106566648 coding upstream 299280 60431333 ~ 60455209 (-)
pabpc1l LOC106566651 coding upstream 513659 60645712 ~ 60652804 (-)
G1395751 NA non-coding downstream 15882 60056184 ~ 60056538 (-)
G1395699 NA non-coding downstream 110534 59961623 ~ 59961886 (-)
G1395693 LOC106566639 non-coding downstream 135528 59936542 ~ 59936892 (-)
G1395691 NA non-coding downstream 139283 59932872 ~ 59933137 (-)
G1396039 NA non-coding upstream 46812 60178865 ~ 60179338 (-)
G1396124 NA non-coding upstream 172076 60304129 ~ 60304835 (-)
G1396370 NA non-coding upstream 268415 60400468 ~ 60400752 (-)
G1396379 NA non-coding upstream 286132 60418185 ~ 60419079 (-)
G1394978 LOC106566621 other downstream 715571 59354200 ~ 59356849 (-)
G1394768 LOC106566610 other downstream 959523 59111372 ~ 59112897 (-)
LOC110491124 LOC106566606 other downstream 1225404 58836641 ~ 58847057 (-)
G1394341 NA other downstream 1325121 58746870 ~ 58747299 (-)
G1394067 NA other downstream 1644307 58424458 ~ 58428113 (-)
G1396467 NA other upstream 422703 60554756 ~ 60582035 (-)
LOC118939463 NA other upstream 529503 60661556 ~ 60672085 (-)
G1396543 NA other upstream 561556 60693609 ~ 60694036 (-)
abhd6b LOC106566659 other upstream 621052 60753006 ~ 60758788 (-)
G1398619 NA other upstream 2602690 62734743 ~ 62735569 (-)

Expression


Co-expression Network