G1397662 (LOC106571856)


Basic Information

Item Value
gene id G1397662
gene name LOC106571856
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 60895914 ~ 60905557 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1596113
tttaaataaacataaatattgtAAATAGATTATAAACCCTAGAGTGGAACATTGGTGCACCTGGTGCCTTTGAGCCCAGGTGACTGTGAATGGTAGAGTATAGCTGTGATTATGAGTGTGGTTTTATAGAGTGGCTCTTTATTTAACCCAGCTTTACATGGTAGCTCAGACACACAGCACAGTGCTCAACCAGAGCCAAATTCGCTGTGGAAAACACAGCATAGAAAAAGCAACAATTCTGCTTCTTTCAGGCCTTTATTCAAGGAGTGTCCAATTGCCGATACCTCTACATTTCAGTCCCAGAACTCAGTGACGGGGGAGGTGAAGTTGGTGATATTGGCAGCCAGCATCAAGGTCTTGTTCTTGCGGACTGTGTCCTCCACACACCGGTCTGTGTTCCACGGCTGATTGCATTTGGCCCATGGCAGCTCCGGTTGAAAGCACTGGAATAGGTAGTAGAGTCCCCAGGCTAGAATCACTATGTAGTAGATGTTCAGGAGAGAGACGATCACGATAGAGGCATAGCCAATACCTACAGAGAAGAGAAATGATTCATTAAAACCAATACTGGATTGATTCTTTGTTATATCAGTAAACCAGTGCAGAAGCTTGGGAGTAAACAGAGAACTAGTGTTCTTGGAATAAGTCACAGCCATGATGAAATCACCATGAAAATTGGGGTTTAAACAATTAGGGAaaagaggatacctagtcagttgtacaactgaatgcatcttctgcatttaacccaacctctctgaatcagagagttgcaggtggctgccttaatcaacatccacatcaTCAGCACCagcggaacagtgggttaactaccttgc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1596113 True 839 lncRNA 0.44 2 60895914 60905557

Neighbor

gene id symbol gene type direction distance location
LOC110492482 LOC106566665 coding downstream 55886 60833073 ~ 60840028 (-)
si:ch73-233m11.2 LOC106566663 coding downstream 83667 60803485 ~ 60812247 (-)
slmapb LOC106566662 coding downstream 105070 60777078 ~ 60790844 (-)
abhd6b LOC106566659 coding downstream 137126 60753006 ~ 60758788 (-)
kctd6b kctd6 coding downstream 143162 60749758 ~ 60752752 (-)
LOC110492486 LOC106566668 coding upstream 11189 60916746 ~ 60970799 (-)
LOC118939567 NA coding upstream 18782 60924339 ~ 60926565 (-)
LOC110492489 LOC106566669 coding upstream 67465 60973022 ~ 60979513 (-)
LOC110492499 LOC106566672 coding upstream 256415 61161972 ~ 61241877 (-)
LOC110491138 LOC106571845 coding upstream 423784 61329341 ~ 61456466 (-)
G1397641 NA non-coding downstream 102862 60792772 ~ 60793052 (-)
G1396551 NA non-coding downstream 190348 60705126 ~ 60705566 (-)
G1396550 NA non-coding downstream 190926 60704582 ~ 60704988 (-)
G1396549 NA non-coding downstream 192304 60703081 ~ 60703610 (-)
G1396548 NA non-coding downstream 192923 60702727 ~ 60702991 (-)
G1397663 slc6a6 non-coding upstream 3831 60909388 ~ 60911920 (-)
G1397660 NA non-coding upstream 6417 60911974 ~ 60914109 (-)
G1397784 NA non-coding upstream 178476 61084033 ~ 61085092 (-)
G1397790 NA non-coding upstream 188450 61094007 ~ 61094705 (-)
G1397822 NA non-coding upstream 237888 61143445 ~ 61144807 (-)
G1396543 NA other downstream 201878 60693609 ~ 60694036 (-)
LOC118939463 NA other downstream 232398 60661556 ~ 60672085 (-)
G1396467 NA other downstream 313879 60554756 ~ 60582035 (-)
G1394978 LOC106566621 other downstream 1539065 59354200 ~ 59356849 (-)
G1398619 NA other upstream 1829186 62734743 ~ 62735569 (-)
G1399235 NA other upstream 2293562 63199119 ~ 63292201 (-)
G1399367 NA other upstream 2479292 63384849 ~ 63385262 (-)
G1400503 zhx3 other upstream 3197813 64103370 ~ 64105039 (-)
G1400552 NA other upstream 3351369 64256926 ~ 64257433 (-)

Expression


Co-expression Network