G1397663 (slc6a6)


Basic Information

Item Value
gene id G1397663
gene name slc6a6
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 60909388 ~ 60911920 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1596115
TAAAATCATATTACATGGTATACTGCATCATGTGAATAACTTATATCTTGTGTGCCATATAATACAAGTTATGCAATTGCATACCGCATGCCATTCCCACAATTGCTGCACTTCCTTGCAGGCAGTGCTTGTATTCATACaactaacccttaaccctttatCAATGATTTGGGACATCTTCTTGGTTATCTAGTATCATCTTTGTATTTGCGTACCTCGATGAGCGGGCCGTCGGACTGGAGGATCTTGATAACCATTACCATGGGGATGCAGATCATGGAGGCCAGGGCCAGAGACCAGCCCAGGCCGATGGACCAGTCTGGGTACTCATACACCTTGTTATAGGTCAGTGGCTTGTACTTCACCAATGAGAAGATAAAACAACCCGCACAGAGGACGGGAGTGATAAAGGTCCAGCTCCATTTCATCCACGGGTTTGGTCGGTAGCCAATCATGTCTTCAATTGCATCATAGAAATTATCAGCGCCATATACCCAGGCTACAGCAATACATTCAAAGAATGCTACCCACAAAAGGCACACACCACTGGCTGCATAGTAGTCAAAGAGTTGAAACACATACATGCCACCCTGAAAAGAAAGCACATAgcaaaaagagagtgagagaaatacAGAAAGGGAGAGCGATGGGGTGGGCATGGGTAGGAAAAAGTGGAGGAGGTTGATACATCAGAATGCGGGCGCTGGGCCAATGAAAGGAGAGTTCAACAGGTGGTGAGATGTGAGATATAATTGAAGTAAAGTTAACTGGAACATAGCATTCCAAATGGTTCCATTCGTGATGTCAAGCACACAGGATGTGATATGAGAGGTCGTTAGTAGAAACCCCATATTGGGTCGCAAAATTGTGACAACGGCAAAGTATGTGGAAAAACTGTTGTGATCTTATCTTATATGTTAACTTGAACTGTGTGTAGTAGAAACGACAGTGTGTATCGTTAGCTTATATTGAAGAGATGTTTCTGTATGTGAACATAATCTAATTACAACGGTCCCAGAAGtgatttaacatttttttttttaactaggcaagtcagttaaga

Function

symbol description
slc6a6 Enables alanine transmembrane transporter activity and taurine transmembrane transporter activity. Involved in alanine transport; amino acid import across plasma membrane; and taurine transport. Located in plasma membrane. Part of apical plasma membrane; basolateral plasma membrane; and microvillus membrane. Biomarker of multiple system atrophy.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1596115 True 1063 lncRNA 0.42 3 60909388 60911920

Neighbor

gene id symbol gene type direction distance location
LOC110492482 LOC106566665 coding downstream 69360 60833073 ~ 60840028 (-)
si:ch73-233m11.2 LOC106566663 coding downstream 97141 60803485 ~ 60812247 (-)
slmapb LOC106566662 coding downstream 118544 60777078 ~ 60790844 (-)
abhd6b LOC106566659 coding downstream 150600 60753006 ~ 60758788 (-)
kctd6b kctd6 coding downstream 156636 60749758 ~ 60752752 (-)
LOC110492486 LOC106566668 coding upstream 4826 60916746 ~ 60970799 (-)
LOC118939567 NA coding upstream 12419 60924339 ~ 60926565 (-)
LOC110492489 LOC106566669 coding upstream 61102 60973022 ~ 60979513 (-)
LOC110492499 LOC106566672 coding upstream 250052 61161972 ~ 61241877 (-)
LOC110491138 LOC106571845 coding upstream 417421 61329341 ~ 61456466 (-)
G1397662 LOC106571856 non-coding downstream 3831 60895914 ~ 60905557 (-)
G1397641 NA non-coding downstream 116336 60792772 ~ 60793052 (-)
G1396551 NA non-coding downstream 203822 60705126 ~ 60705566 (-)
G1396550 NA non-coding downstream 204400 60704582 ~ 60704988 (-)
G1396549 NA non-coding downstream 205778 60703081 ~ 60703610 (-)
G1397660 NA non-coding upstream 54 60911974 ~ 60914109 (-)
G1397784 NA non-coding upstream 172113 61084033 ~ 61085092 (-)
G1397790 NA non-coding upstream 182087 61094007 ~ 61094705 (-)
G1397822 NA non-coding upstream 231525 61143445 ~ 61144807 (-)
G1397826 NA non-coding upstream 242252 61154172 ~ 61154372 (-)
G1396543 NA other downstream 215352 60693609 ~ 60694036 (-)
LOC118939463 NA other downstream 245872 60661556 ~ 60672085 (-)
G1396467 NA other downstream 327353 60554756 ~ 60582035 (-)
G1394978 LOC106566621 other downstream 1552539 59354200 ~ 59356849 (-)
G1398619 NA other upstream 1822823 62734743 ~ 62735569 (-)
G1399235 NA other upstream 2287199 63199119 ~ 63292201 (-)
G1399367 NA other upstream 2472929 63384849 ~ 63385262 (-)
G1400503 zhx3 other upstream 3191450 64103370 ~ 64105039 (-)
G1400552 NA other upstream 3345006 64256926 ~ 64257433 (-)

Expression


Co-expression Network