G1397660


Basic Information

Item Value
gene id G1397660
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 60911974 ~ 60914109 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1596111
TCTAGGAAGAGATGATGCAATGAGCATCTTAAAGAAGGACAGACGTTAGACAAAAATACTTTGGTACACTTGATTTTCCAACAGGGTTTATTTATCGCCCTCTGGACTAGTAATCTTTCTGACCAAGCACTGTACTGTGAATGTTCATGTACATGCATTGGGTAAAATAATCTCACTTGAACTTTAAACattcatattttttatgttgGTCACATatcaatttttgtattttttacatcTGTTTTCAAATTTAAATCAAATCATTTGAGTGGTAAAGGCCATTTCTTTGACAAATATGACACGCTGCAAATATTCATTCAGGCTCATAACatttaacattaaaatacaaatTGCTGACTGTATTCAGAAAACATCAGTCCTCATCAGTGACAATGTTCATATGATGTACAGTATAAAATGGGTTAATACAAAAAGGCATATGTGATTCACAAACaataaaaatactaaaatacaaaCAAGTAAAATACTAAAATACAATTGCCTAAAATGAACATGATAAAATCCAGAGTCTGGTGGTAGATTCATATGATACAGATATTTAGTGACCATCGCTGCTATTAAAATGAGTGCActggagaaaaaaaactattatttcacatttttagaaaaaaacattttgttaaggttacattttttactccaatcaagttatggTTCTCACAACTCTCACAGGTTTATTCCTAAAGAAACAGAATGTTTGATGGAAATGTTCCAcctttattttatatatttatagcAAGTGAGTGAGAGTCTAATGCTCCTGTTTGTACCGATAGATAACAAAGTGAACAATACCAAAAAGGTTTGAAGCTATATACTTTCCTTTTGAAATGCATGGTGCAAATGTAACTGTAGGTTCTTGCAACCATTAcagaggaggttggtggcaccttaattggggatgacatgctcatagtaatggctggaacagaatcaatggaatgatatcaaatatATTAACAGCATGGTTTCCAtttggttgataccattccattccaaccattattatgagccgtcctcccctcagcagcctcctgtggaccATTATCATAAGAGATCACTACAATAAAGGTGAAACTCAACGTATAAAGTGCAAAGAGAGGTTTCAATAAATGCACTGGGGCAGACTGTAGGCAATGTACAAATACTCTTAAAATGCTTCTTCCGTTTTATCCTTCACTTCCTCCTTATTTTCCCCACCTCCTTTCTTGCCTCCCTCCTAAGGACATGTGATCCTTCCGGGAACATTTTGTACAGTATTTGGGCATGGCCATAGTTAACCTTAAGGACGTACATATGAACTTCTATATTTACACTGCATGTTGTCACTATACATTCAGGTGGTGTGGATGTCTACTCTACTAGCAGATGTGACTGGCTGGCGTCCACTAGCACAACTAACATTTTTTCAGTTGAATCTCAAAACAAACAACAACGACAACAGATAAAAAATGACCTCAGACAAGGATACTGCCACAATAATGTGAGGAAATTATCTTAATAGTTTGCTACCTAACATGTTACACGTTTAGTTTACTGTATATGTGATAAGTGAAAATTACTTTTTTTCTAGTATTTCCGAACAAACACCTTCTCAATTCTCAACAATCAACAGAAAGTTAATTAACATAGAACAACATGTTCTATCTCAAAATATTGCCTGAACTGAGATCACCACCCACTACAGCAACGACAACAACGGTGACAACAACGGTAACaacaacattaaaaaaaatacagagagAAAAAACTACAACAACTCAACGACAATATATATAATGTAGctctcttcatcatcatcatcatcatcgtcatagAAACCAAACCAGAATATTCCTAGTGCAGATATATAGAACAATGTAAACCTGGTTCTACCACTATCAAAGTTAGCAAATATATGATAAAAACATAGAAAGCACGTcaatcagcatgtcctctcaCAGAGAGTGCTCACATCATTGTTTCTACAATGGTGTGGGTGGGATTGATCAGGCCGTTGTTCCCATTGGGGTCCAGAGGCTGGGTCAGCTCGCTGCCCTTCATGCTGTACTCTTTGGGGCGAGAACTCGCACCTCCCTTTACTGGGGCCGCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1596111 True 2113 lncRNA 0.36 2 60911974 60914109

Neighbor

gene id symbol gene type direction distance location
LOC110492482 LOC106566665 coding downstream 71946 60833073 ~ 60840028 (-)
si:ch73-233m11.2 LOC106566663 coding downstream 99727 60803485 ~ 60812247 (-)
slmapb LOC106566662 coding downstream 121130 60777078 ~ 60790844 (-)
abhd6b LOC106566659 coding downstream 153186 60753006 ~ 60758788 (-)
kctd6b kctd6 coding downstream 159222 60749758 ~ 60752752 (-)
LOC110492486 LOC106566668 coding upstream 2637 60916746 ~ 60970799 (-)
LOC118939567 NA coding upstream 10230 60924339 ~ 60926565 (-)
LOC110492489 LOC106566669 coding upstream 58913 60973022 ~ 60979513 (-)
LOC110492499 LOC106566672 coding upstream 247863 61161972 ~ 61241877 (-)
LOC110491138 LOC106571845 coding upstream 415232 61329341 ~ 61456466 (-)
G1397663 slc6a6 non-coding downstream 54 60909388 ~ 60911920 (-)
G1397662 LOC106571856 non-coding downstream 6417 60895914 ~ 60905557 (-)
G1397641 NA non-coding downstream 118922 60792772 ~ 60793052 (-)
G1396551 NA non-coding downstream 206408 60705126 ~ 60705566 (-)
G1396550 NA non-coding downstream 206986 60704582 ~ 60704988 (-)
G1397784 NA non-coding upstream 169924 61084033 ~ 61085092 (-)
G1397790 NA non-coding upstream 179898 61094007 ~ 61094705 (-)
G1397822 NA non-coding upstream 229336 61143445 ~ 61144807 (-)
G1397826 NA non-coding upstream 240063 61154172 ~ 61154372 (-)
G1397828 NA non-coding upstream 242426 61156535 ~ 61156792 (-)
G1396543 NA other downstream 217938 60693609 ~ 60694036 (-)
LOC118939463 NA other downstream 248458 60661556 ~ 60672085 (-)
G1396467 NA other downstream 329939 60554756 ~ 60582035 (-)
G1394978 LOC106566621 other downstream 1555125 59354200 ~ 59356849 (-)
G1398619 NA other upstream 1820634 62734743 ~ 62735569 (-)
G1399235 NA other upstream 2285010 63199119 ~ 63292201 (-)
G1399367 NA other upstream 2470740 63384849 ~ 63385262 (-)
G1400503 zhx3 other upstream 3189261 64103370 ~ 64105039 (-)
G1400552 NA other upstream 3342817 64256926 ~ 64257433 (-)

Expression


Co-expression Network