G1397108


Basic Information

Item Value
gene id G1397108
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 61771965 ~ 61778169 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1595461
ATCAGAGAGCCCGCGAGAGAGACAGACGCTTGCATCCAGTGTTTCCGTGCAGTGCGGAGGAACCGCCAGATGAaaaggggacagacagagagagaacgggTTCCAGTCCTTTACATACACCGACGGAGTGCGCGATTTACCGGGGAGAGAAGACACCGATGGCGCGCAAGGGGTTccattgtatttttatttattttttattgaagaAGAAAATAAATCTAGGAATTTTCAGAGACGTGAAGAAAATAGCTTTCTTGTTATCCAAGATTGTCAAATAGGGGATAGCGATTTTACTCATGCGGCCAAAATGCTTTAAGAGACATGTAATCATACAGGCCTGATATAGCCTGTCAACAGAATGCGAGGGAAGAGCCATCCAACGTTTCAGCGGAGGGCGTTTGTAACGGACAAATGGAGGAACTGCATCTCAGCTATGCTTCGGAGCGCATTCCTATTTCCTACTCAGCACAATGGGATGTATATAATTTGAACCAAATAGCTACTCTGTGACAGACCATCCGATTGTGTTTCTCAATGAGGACAAGCCATGGGCTGCTTTGAGAACATGCGTTttgattttgtttgttttttgataGACAAAGACATTTTGTTTTGAACATGGACACCCGTCGACGTATGCGTAAAGGCGCACAGCTGCATAGAAAACTAGAGCATAGGCTAAAATGTAATTGAGCTATTACGTTTTATGACAGACGAATAGCACTATCCAGTCTGCAGCAGTGTGTAACGAGTCGGTGTTTCGCTTTTGACTTTGTTAGTGTGTGCATATACATGCTATAGTGCTATGTGATGATGGTGCGTTTAAACGCAGAATATGATAGCACTGATAATTGCGTAAGATTTCAATCACATTGCCTGTGTATTTAGTTTGGTCAGAAACATGCATCATTTTTACAGTGgtcggtgtgtgtttgtgcgtgcgtgcgtgcgtacataTCCGAGTGTTTGGCGCGCTATGATCTCAGTCCAAGTTTTGCATGTCCTCTTTGAGAGCTCGTGTCTTGGGTTGCTCCTTTGGGTGCGCGCGGAGTTGGGTGTCAAATAGGGTTAGGGATTCGACATTGCAGTGCTCGCATCCACGGGGGGTGACCAGTGCTTGTATCCGTGCTGGGGCGCGCGTCATCAGGAAGGGTTATCACTCTGCGTGTTCACAGCGGACCTTGATTTAATGTCCATACAATTAAGGCACGCGGTGAATGCCAAGAGAGGAATCTACACAGCATCGTGTTCACTGATATAGGCATTCAATCTACCCCCATTACGCGCTGAAGACAGAAACGAAACCTTTTCATACTGACCATTAATATCATATTTGCGTTGAGATGACAGGGTGTGTTTTGGATgacagggtgtgtttgtgtgtgtgtgtgcgtgcgtgttcacTCTTCTGAGTGCATGCGCAATGCGTAAAGTAGTGGGTGGTTTTGGTGGCTTCTGGCTCTTAGAAAATGCATAGATTTTATATCTATATCCAAACCAGATCTGCGTTTAGTTTATTACTAGACTGAATGGGAAACCAGACCTATTACATCTGACCTCCAGTCAAATAATGAGTAGGTACATTTCAATGAACGGAACAGGTCTGCTCCTTGGCTATGCAAGGCCCTGTGGTCATGAAGCATCGATGTAACCGCAACCATTTCTATGCGTACATTTCAACACACAGCTGTCATGTGAATATCGGAGATCAATGAAATACTAGTAGGATAAATATGAGGGCAATATCCAAAATTGCATGTACAGAGAAAATGTCACTTATTTTGGATACATTCAGAACTAGGCTACTAGAACCACCTTCATAAGTATATTATCaaatatcccactgggcacagacgtcctTTCAACGtcgagttgtcaactaacatgaattcaacgtgaaatcaacaaaaaatgtcacattGTCATTGAATAGGTGAAAAGTTAGAAAAAATACGAAATTCTCTTAAGTTGAtgacgttttttgttgttgttgaaatgacgtggaaacaacgtttatTCAACCCGTTTTTGCACAGTGGAATAGGTCTAATTGAGTAGGTGATTTAATGGTTTTGGACTGAATTATGAATTCGATCATTTAAATGAGAGAAATATAATTACAATATCAAGGCTAGTCTATCTCGCTTCCATGGCACCACTAAAGGAGGCCTATTGCTCAATACACCAGCTAGGCCTATATTCAAACGAGATAACTCATGGTATAATTGAAATAGATCGATTTTTCCAACTGAAACAAGTAGCCTCTAGGCTAATCGAAACGCAATGAGGCAAAGGCGCCATCCTGCCATATCCAGCAGTCTGCGTCACAAGCCGGAGACATGAATTATATTAACAAAATTGTTCCCTCTAAAGATGTTTCCAACTATACTCTACATATACATATTCCCCATTTAAACAGGTCGCCTGCAAAGTTAGCATGTGTGTGGATCTAGAGCTATAAATAGCATTTCATCAAAGATATTTTAAGTTTCGTCTAGTAAAAATGCCCACAAATGAGCTGTCAAAGACAGGCAACAGTGACCATAACTGATTAATTGTACTATTTCTGAGTCTCTTAGAACGTTGCCTTGCATTTCATGTAGCCTATAACTATCCATAGGCTAAGCCTTCATGTCATGAGATATTGCTATTCGTTTGGGCAACTTTCTTGTTTAGAAATTCTTGACAAAGTCCCCAAATATTACACAAATAGCCCAACTGACAACAAATGAATGAAGTGAATTAAAATGACAGATATTGTTCTAGACTTCCCGAGGCCTGTATGGTCAGGTCACCGTCATTACGCCTTGTCATGAGTTAAAGAGTCAATGCCACCTATAGgaaccatattaacaatgtatcACTGGCTTGGTTGTACAAATGCTAGTAGCCTAGTCCATTCAAATGCAGCCTATATAAAAAAAGGTTTTGCTGTAAAACAATAGCCTACAAAACAACATCAAATATACAATTTATTATACATTTGCAGCAGGCAAAAGAGTACCTTTTTAGACTGAATATCATATATAGCATAATAATGTTTGATGGAGCCAATAAATCAGAGGATACATATAATTTGAAGGTTTCTGAATTATTGAAAGAGTATTGTCGAGATCTCTCAGGTAAGTGGTTGTTAAGGAAATCAAttctgatatatattttttaataatgtcACGTTTTTGAAACTATTTTCAATGCTTGGCCTGGGTAGCATACACTTGGAATGTTGTGTACAATATAACCAATAAATAAATGCTGAGGGTGCATGTATTATTTCATTGTCGGTGATTTTGGGAAAGGGGAAAGGTTTCAGAGAAATGTTTATGTGAAATAGGCCTACCGGTATAAAGGAACACAAGACATTAGGCATATCTGTTAAAAAAGCTACTTCTAGATAGATCCCGTAGTAGGGATACCTGTAACAAATTGAGATGGACTCTGCCTATTAGTTCCTCAGTAGTGAGGCCTATTCAGGACCACGGAGAGTTCCCGTCAGGTTGCATGGATGAATTAAGAACTATAACGTTGACAATAGACCTAGCCTACCTTTAGGCCTAACATCCTCAAAGGGCTTATAAACATTTATTCCGTTTTGGTAGTTCAGTTCGGCCTATATATTATACCTTATGACAGCTAGGAGACTTAGACCGACTTAGTCCCTGCGCTGCCCAGGCATCATAGGCCATCGACGACTCTCCATTGACTCTGTTCTGGGCTGAATCTCGTTCCATGCCTGTGTTCCTGTTCTAGAAAGCAGTAGAAGCCTTGTTTTAAATAAATTCACGTACGCATGTAGGCCAGTCTATTAGCAACCAAATAAATCTATGTACATTTAAATTTCACAGTTGAAGATGCTTTTAACTTTCaatatatttgacatttttattttacttatATTGTGGGTCTACTGATATATTCAAAATAGCGAATTCGTCATCCGTGGAAATGTAGACCGATTAGTTTATAGTCTAATAATAGCTACTGTCCCGGACAAGGGAGTTACTACCACGTGCTCTGCACCTTTTCTCACTCTAGTCTAGTCAAATTGTCTTCATACGCTTCTATATCGGCATGTTATAACGTAGACATAGACCTAGACTATGGCATAGTTGTCCAACAAGACATTATAATCGCCAGACTAAATCATCACCCAGCTGATTTCAATTCAATACGACATACAGGTAacttccaaaataaaggaaacaccaacataaagtgtgtAAATTGGGCATtgtgccaccacgagccagaacagcttcaatgtgccttggcatacATTCTACTAGTGTCTGTAACTCttttggagggatgcgacaccattctacAAAGAGAatttccataatttggtgttttgttgatagctttgactatgtacagactcagtgagcatagccttgccattgagaaaggccgccataggcagacatggctttcaagagaagacaggctatgtgcacactgcccacaaaatgaggtggaaactgagctgcaattcctaacctcctgtccaatgtaagaccatattagagagacatatttccctcagattacacagatctacaaagaatttgaaaacaaacccaattttgataaactcccatatctactgggtgaaattccacagtgtgcatcacagcagcaagatttgtgacccgttgccacaagaaaagggcaaccagtgaagaacaaacaccattgtaaatacacccatatttatgcttatttattttctcttgtgtacccttaaccatttgtacatcgttgcaacactgtatatatacgtaatatgacgtttgtaatgtctttattgttttgaaacaatttactgtttactgttaatttttattgtttatttcacttttatatattatctacctcacttgctttggcaatgttaacatgtttcccatgccaataaagcccattgaattgaattggtgGTGGGAAACACTGTTTTAGGCTtggctccagaatctcccatggGCCTAAGTGttaaattgggttgagatctggtgactgagacggccatggcatatggtttacatcattttcatgctcatcaaaccattcagtgaccacttgtgccatgtggatgggggcattgtcatccatCCTATGGGGCCCAGCCATGGTAGCCTGCCGACCATTTTTATGCATAACCCTAACCATGATGGAACGTTAACTGCTTAATTATCTCAGAAACCACACctatgtggaagcacctgctttcaatttactttgtatccctcatttactcaagtgcttccattattttggcagttacatgtatgtgtgtgggtcAGGTTTCAAAAGGGGGGGATCAGAGACGGATTCTATAATCCTCTTTTTTTCTATCGGGATTATATCAATCTGTCCGTTTTTGAGCTGTTTTTTCAGAAAATAATAGGATCATTCTGATCCAGCTACCACAATATCACAGAATCCAGATTTTCAGTGCTTTGAACAGGCCATGAACCTTACCATCTATTGGACAGGTTGTGGTACTACTTCTACACTGTCATAGGGAAACAGAAAGGAGTAAACgacagtgaacaaaaatataaacacaacatgtaaagtgtttcatgagctgaaataaaaaataaaaaatgtatttatttctctcacattttgtgcacacatttgtttacatccctgttagtgagcatttgtcctttgccaagattttccatacacctgacaggtgtgacacaTCAAGATgattattaaacagcatgatcattacacaggtgcaccttgtgctggggacaataaaaagccactataaaatgtgtagttttgtcacacagcacaatgccacagatgtctcaagttttgagggagcattcaattggcatgctgattgcaataatgtccaccagagctgttgccagataatttaatgttaatttctctaccataagccgcctccaatgttgttttagagaatttgacagaatgtccaaccggcctcacaaccacagaccacgagcccaggacctccacatccggcttcttcacctgcagaatGGTCTGAGGGTGGGTGGGaggctgaggagtatttctgtctgtaatatatcccatttgtggagaaaaactcattctgattggctgggcctggctgccaagtgggtgtgCCTATGCACTCCAAGGCCCACCCACGGCTGCAcccatgcccagtcatgtgagatctatagattagggc

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1595461 True 6205 lncRNA 0.41 1 61771965 61778169
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110492506 gid8 coding upstream 172583 61596624 ~ 61599382 (+)
LOC110492501 LOC106566604 coding upstream 264616 61503759 ~ 61507349 (+)
LOC110492493 LOC106566673 coding upstream 464465 61290248 ~ 61307500 (+)
LOC110492492 LOC106566670 coding upstream 621029 61047129 ~ 61150936 (+)
LOC110492487 dcaf1 coding upstream 736618 61013168 ~ 61035347 (+)
LOC110492502 LOC106566594 coding downstream 24075 61802244 ~ 61808205 (+)
LOC110491140 lime1 coding downstream 168817 61946986 ~ 62053183 (+)
LOC110492498 slc2a4rg coding downstream 289879 62068048 ~ 62177430 (+)
prpf6 prpf6 coding downstream 905508 62683677 ~ 62707927 (+)
aar2 aar2 coding downstream 941630 62719799 ~ 62724366 (+)
G1397128 NA non-coding upstream 1017 61770743 ~ 61770948 (+)
G1397126 NA non-coding upstream 8319 61763437 ~ 61763646 (+)
G1397120 NA non-coding upstream 23043 61748694 ~ 61748922 (+)
G1397074 NA non-coding upstream 116508 61655035 ~ 61655457 (+)
G1397043 NA non-coding upstream 142225 61628382 ~ 61629740 (+)
G1397110 NA non-coding downstream 955 61779124 ~ 61781867 (+)
G1397137 NA non-coding downstream 20959 61799128 ~ 61799744 (+)
G1397138 NA non-coding downstream 23790 61801959 ~ 61802158 (+)
G1397143 NA non-coding downstream 30223 61808392 ~ 61812882 (+)
G1397144 NA non-coding downstream 36042 61814211 ~ 61814495 (+)
G1397016 NA other upstream 212964 61556531 ~ 61559001 (+)
G1396801 LOC106566672 other upstream 548943 61213735 ~ 61223022 (+)
G1396606 NA other upstream 963673 60805759 ~ 60808292 (+)
G1396313 NA other upstream 1073652 60697863 ~ 60698313 (+)
G1397290 NA other downstream 276713 62054882 ~ 62055173 (+)
G1397502 NA other downstream 741423 62519592 ~ 62576203 (+)
G1398625 NA other downstream 963933 62742102 ~ 62742537 (+)

Expression

G1397108 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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G1397108 Expression in each Bioproject

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G1397108 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
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Co-expression Network