G1398142



Basic Information


Item Value
gene id G1398142
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 61828480 ~ 61828761 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1596660
agaagaggtagagagggagggagaagatctagtaagaagtaggagggagaagaggtagcGAGAGAAGAAAGAGGCACACATCTGAAGAACAGCTCATGGTTGCCGTGACCTCATAGCCTCGATGTCAGAGGTCACATTGAGGGTTAACCAATCATGTGGCAGAAAACATTTAAGTGTGGTGACAGTGGTTAATATAATGCAC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1596660 True 202 lncRNA 0.46 2 61828480 61828761

Neighbor


gene id symbol gene type direction distance location
LOC110492496 LOC106566592 coding downstream 31765 61779118 ~ 61796715 (-)
LOC110492507 LOC106566595 coding downstream 139401 61687247 ~ 61689079 (-)
LOC110492509 LOC106566095 coding downstream 227057 61595093 ~ 61601423 (-)
dnah12 dnah12 coding downstream 233659 61558700 ~ 61594821 (-)
asb14b LOC106566601 coding downstream 270058 61552330 ~ 61558422 (-)
LOC110529871 zbtb46 coding upstream 352468 62181229 ~ 62311208 (-)
uckl1b uckl1 coding upstream 500027 62328788 ~ 62386980 (-)
LOC118939568 NA coding upstream 513605 62342366 ~ 62347109 (-)
LOC110492495 znf512b coding upstream 558667 62387428 ~ 62459484 (-)
LOC118939569 samd10 coding upstream 641189 62469950 ~ 62665506 (-)
G1398133 NA non-coding downstream 14000 61813884 ~ 61814480 (-)
G1398132 NA non-coding downstream 16027 61808397 ~ 61812453 (-)
G1398126 NA non-coding downstream 28743 61799318 ~ 61799737 (-)
G1398120 NA non-coding downstream 50378 61773041 ~ 61778102 (-)
G1398118 NA non-coding downstream 65243 61762525 ~ 61763237 (-)
G1398185 NA non-coding upstream 84441 61913202 ~ 61913587 (-)
G1398231 NA non-coding upstream 152917 61981678 ~ 61981894 (-)
G1398243 NA non-coding upstream 173250 62002011 ~ 62002243 (-)
G1398250 NA non-coding upstream 181708 62010469 ~ 62010714 (-)
G1398255 NA non-coding upstream 187400 62016161 ~ 62017667 (-)
abhd6b LOC106566659 other downstream 1073609 60753006 ~ 60758788 (-)
G1396543 NA other downstream 1134444 60693609 ~ 60694036 (-)
LOC118939463 NA other downstream 1164964 60661556 ~ 60672085 (-)
G1396467 NA other downstream 1246445 60554756 ~ 60582035 (-)
G1394978 LOC106566621 other downstream 2471631 59354200 ~ 59356849 (-)
G1398619 NA other upstream 905982 62734743 ~ 62735569 (-)
G1399235 NA other upstream 1370358 63199119 ~ 63292201 (-)
G1399367 NA other upstream 1556088 63384849 ~ 63385262 (-)
G1400503 zhx3 other upstream 2274609 64103370 ~ 64105039 (-)
G1400552 NA other upstream 2428165 64256926 ~ 64257433 (-)

Expression



Co-expression Network