XLOC_032967 (mier1a)


Basic Information

Item Value
gene id XLOC_032967
gene name mier1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 34823721 ~ 34838413 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064053
tgTTCGCAACTCTACTGCAGCTGTTCTCATCTTCAGAGTTGAGAATTAAACAATTGTTATTGCTGGCTTCACGCAGAACCTACATCAACTATGGCGGAGcccTCCTTAAGTGCTTCAGGCTCAGAAGgaGCACATGCAGTGGTCCAGGATGAGGACAAAGACTTTGATCCTTCTGCAGACATGCTTGTGCATGATTTTGATGATGAGCAGACTCTGGAGGAGCAGGAAAAGCTGGAGGGAGAGACCAACTTCACCAATGAAATTGATGACCTCACTCGAGAGGGTGAGATGCCCATCGAAGAGCTTCTGAAACTGTACGGCTACAGCAGTGGTGCCTCtccagaggaagaggaggaagatgTGGAGGAGGAAGATTCCACAGAGAACGCTTGCAGCAAAGTGGAGGAAAAGCCAGAGCTTTCTGACCAGGAGGAGGTTGAAGATGTGCAGTCATCTGGTGAGGAGCCTCCGTCAGGCAGTGTGTCTCACAGCACTGCTCTGCTCATCTGTTCTCGGCCATCCACTTACTTTGAAGGTTATGAGGAAGAATCTGAAGATGAAGAGTATATTCCATCTGAAGACTggaagaagGAGATTATGGTTGGTTCAATGTACCAAGCGGAGACTCCTGTTGGCTTGTGTAAATACAAAGACAATGAAAAagTGTATGAGAATGATGATCAGCTTTTATGGAATCCGGAGTTACTTCCAGAGGAAAAGGTTGTGGAGTTTTTAACAGAAGCCTCTAAACGCAGCGGAGATGAAGCTGGTGTCGACGCCATTCCTGAAGGATCTCACATCAAAGACAATGAACAGGCTCTCTATGAATTGTTTAAATGCAACTTTAATGCAGATGAAGCTTTAAAAAGGCTGAAATTTGATGTAAAGCCTGCTAAAGAGGAAATGTCAGTTTGGACGGAAGAGGAGTGTCGAGGTTTTGAGCAGGGACTCAAAGATTATGGAAAAGATTTCAGCTCAATACAAGCAAATAAGATCAAGCTTGGGAAAAGAAAATACAGCCTTCGTCCTGGAGTTTTGGATTATATGGAGTGTTTTTTGGATGAGAAGGAAAGCTCTGAGTCTGGTGGATCTTCTTTATCACTTCCTACCACATCAAACAACAGCAAAAACCCACTGGAGCCAGAAAGTGACTCTAACGCTCAGAATGGTGTAGAGAACCATTCCTCCGAGCCTCTTCTCTGTGTCAAAGATGAGACTTCTCATACAAACGGCTCCACCGCACGTCCAGAAATATCCATAACACACACACCACCCGACTGTAACCTCAACATGAGCAGCCCAAACACACGAATAGTGGAGATCACAGTCATGCAGGAGGAACAACCTCTGAAGAAGCTTAGGATTGAGACAGACCCAAACACTGAAGTCGCCCTCAACAAAGCTGAAATCGTCTGACTCGCCAGCAAATCCCAGAACTCCTGACCTCAGATAGCCTGCCCTGTTTTCAGCATGACGGTAGctgaggtgtgtttgtgtgtgtgtgtgtgagtgaatttCAGGGATGCAAATGAAGCACATTTCTTTCCTCCTGCATTACTGCCACTGAGCTCAGTTCACATCTCAACACTCATGATGGACTGTCATATCAGACCGTCATCCCTGTAGCACTATTTATTGGAATAGAATAAGGTGATCATTGCTTTTGTATTTACTCTCGGTTGTTTTGAAAGAAACAGCTGACTGTATTTTTGTGAACTTAGTCATTTATTGTGCATAACATTACCATGGCTGTGAGTGCACACTGTGGAAAAGCCCTCTTGGTTTTATATGAAgtataatactgtaaataatcgaattgtaattattaatattctcaaaaagtacatattttgtaTTTGGGAAATCATGCTGAATGATCCAGAGGGTTGTAAAAAGGTTTTCTCTGATACTGTAACATTCCATCcccttttcctttcctttttgaCCAAAGTGAATGGCTGATATTGGTCTTTTAACGCAGCGTTTTCGAAAGCTATTTCCTCTTTATATGAAAAATTGtcttatttttgtatttgatagctatttattttttttaatcagatatCGGTGATGCATGAAGccagtataaaatatatttgtataggCTGAAGCGAGTACGAATTAAAAGGCAGAGCAGAAACGGTTgtgctttttattcattttctcacTGTGACATGTCGATCCGTCTTTGAGAGAGCGTTTTTAAGTTTTCTAGGACctgttatttttttcagaattggTAGAGGTAAATACGATCTGCAGTTTTCAGAAATCGGTTGTCATCCACATCTGCATAGCTCAGGAAAATAAGTACTGAAATATTAAAGGATGTTAAATAGCTGTCACTTTCAATTAGAGAATCATTCATTAAACTCAGAATATTTACCCAAACGCGTGTCTTTTGTGTTTACTGGAGCGACTCGGATTTTGTCACCTCATTACCACTTTTAGTCTGAGTGGATTTTGATGCTAGTTTTTAAGAGTTCTTTTATTGTAATGTATTCGTATCCTGTACAGCAGGTGTCAGTGTTGAGCTCAACTCTACACACCCTGCGTTTTATTCAAAGTCTTCAAGTTACTGAAATATTGTATtgtaggtcttaattttcctttgtttatgtataaCCTAATCTGGCCAACACCCAACCAATAACCAACAATCTATTGCAATAAAACGTTTTATTTAAGAATAATTTTTAACTGTCAATGTTATTCATTTTTATAGCACTATTTAACACATCCAGAGGTTGACCAATGAGCTGGACACTACAAACCaatctttgatttggcattttatcagtgaaaattgtctgttttagctatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataattataacaaaaacagacaattttcactgataaaatgccaacTCATCATCATCAGTCATGTTTCTTACCTGTTAAACGccttgcagcagcagcagcatcataactctatttaccataatggtttacttatttttctttaaaacattaacatttgtttaaaagttctccatgtatttactgctgaggaagCTGACCTGGTCAGAcctagtttattatagtttttaaaacctttaaatcatttttgaattatttatttattttttaagaaaggttgaaatttttttttatgtacgtatacaactagagtttgcttgtttttcacacaatatttaaattattttgctcagaattaacaaaaaatatattttaatgattgaatttttattacagtattattaaatgtattaaattatattaaaagtttgatagggcaaataaaatgctaaaaactGGGCCATTCAAAGAACTCCtatagtgtttagccctgtactGGGAAATTTTTTTTGCAGcctatttctgtatttgcatgtgttgtgaatgTGCGGTAAATGTTTTCATAAATAGATCGTGGTTTTCAATAAAGGGTTTTTCTTAAAATCCGCATGAAatctaaatgttttcatttatctGTGCATGTCGTTAGTGTAAATTTAATTTGCTCAATCTTTATTCAAATACTATAACCTTCTCTTTCTCTTGAAATGACTTTTCTTAACTTCTACCTTTAGAATGACATTCTTTTTTATGCACAAGACACTCTTAACTTCCATTTCATGACACGTTTGAGCTTCCGACCAAACCAtacttttaaattgtaaatatttcatGTAGTTTGTTACTAAATGTAAAGACAAGAAACCTTTTTTTCCCATTTAGCATTTTTGCACAccatatgcatatttaaatactCAATAATAATTTAGAATAGTTTAAATTaagcactgaaataaaaaaagaaagaaataaaagttCACCAGACATGGTAATGGCCTTGTTTCAATCCCCAAATAGTGACAAAACTAAATGTTTGACCAAATAATTTAATTTGCTCACATCATGCAGTTAACACAACTAGAAGGTTGAAtgacaaatgttaacaaaaatcaCTTTCAGtaagtatattttttaaaatatacgtTTATTTAGAGTAGATAATCTTTatcccaataaaaaaaaaaatcattttcaaagTTGCAGTGAACTTTTACTCTGTTTATATCACTAAGAGAGCCAAATGTGAAAATGTAGAGCTCAGTATCAGTATAAGCAGAGCAGAAAAGAGAATAAACATACATGCAGATGAGTGTATCATCAGACAGCTGTTGAAATATtccatatatattataaatatacataatactAAATGTAGAGTTTACTGTTTGGCTGTTTTGGTTTAAGCATTTTGGCTTTGCTCTATAGACATGTCTGTTTTTGGCTCTCAGGGAAACACTTGCTGTTGGAGATTCATTTTGGAGATCATTACTTCTTTTAGTACATTTATGATATCAGAATTAACA
>TCONS_00064054
GCAGCTGTTCTCATCTTCAGAGTTGAGAATTAAACAATTGTTATTGCTGGCTTCACGCAGAACCTACATCAACTATGGCGGAGcccTCCTTAAGTGCTTCAGGCTCAGAAGgaGCACATGCAGTGGTCCAGGATGAGGACAAAGACTTTGATCCTTCTGCAGACATGCTTGTGCATGATTTTGATGATGAGCAGACTCTGGAGGAGCAGGAAAAGCTGGAGGGAGAGACCAACTTCACCAATGAAATTGATGACCTCACTCGAGAGGGTGAGATGCCCATCGAAGAGCTTCTGAAACTGTACGGCTACAGCAGTGGTGCCTCtccagaggaagaggaggaagatgTGGAGGAGGAAGATTCCACAGAGAACGCTTGCAGCAAAGTGGAGGAAAAGCCAGAGCTTTCTGACCAGGAGGAGGTTGAAGATGTGCAGTCATCTGGTGAGGAGCCTCCGTCAGGCAGTGTGTCTCACAGCACTGCTCTGCTCATCTGTTCTCGGCCATCCACTTACTTTGAAGGTTATGAGGAAGAATCTGAAGATGAAGAGTATATTCCATCTGAAGACTggaagaagGAGATTATGGTTGGTTCAATGTACCAAGCGGAGACTCCTGTTGGCTTGTGTAAATACAAAGACAATGAAAAagTGTATGAGAATGATGATCAGCTTTTATGGAATCCGGAGTTACTTCCAGAGGAAAAGGTTGTGGAGTTTTTAACAGAAGCCTCTAAACGCAGCGGAGATGAAGCTGGTGTCGACGCCATTCCTGAAGGATCTCACATCAAAGACAATGAACAGGCTCTCTATGAATTGTTTAAATGCAACTTTAATGCAGATGAAGCTTTAAAAAGGCTGAAATTTGATGTAAAGCCTGCTAAAGAGGAAATGTCAGTTTGGACGGAAGAGGAGTGTCGAGGTTTTGAGCAGGGACTCAAAGATTATGGAAAAGATTTCAGCTCAATACAAGCAAATAAGGTGAGAACTAGATCTGTAGAGGAATGTGTGGCCTTTTATTACATGTGGAAGAAATCTGAGCGTTATGATTTCTTTGCACAGCAGATCAAGCTTGGGAAAAGAAAATACAGCCTTCGTCCTGGAGTTTTGGATTATATGGAGTGTTTTTTGGATGAGAAGGAAAGCTCTGAGTCTGGTGGATCTTCTTTATCACTTCCTACCACATCAAACAACAGCAAAAACCCACTGGAGCCAGAAAGTGACTCTAACGCTCAGAATGGTGTAGAGAACCATTCCTCCGAGCCTCTTCTCTGTGTCAAAGATGAGACTTCTCATACAAACGGCTCCACCGCACGTCCAGAAATATCCATAACACACACACCACCCGACTGTAACCTCAACATGAGCAGCCCAAACACACGAATAGTGGAGATCACAGTCATGCAGGAGGAACAACCTCTGAAGAAGCTTAGGATTGAGACAGACCCAAACACTGAAGTCGCCCTCAACAAAGCTGAAATCGTCTGACTCGCCAGCAAATCCCAGAACTCCTGACCTCAGATAGCCTGCCCTGTTTTCAGCATGACGGTAGctgaggtgtgtttgtgtgtgtgtgtgtgagtgaatttCAGGGATGCAAATGAAGCACATTTCTTTCCTCCTGCATTACTGCCACTGAGCTCAGTTCACATCTCAACACTCATGATGGACTGTCATATCAGACCGTCATCCCTGTAGCACTATTTATTGGAATAGAATAAGGTGATCATTGCTTTTGTATTTACTCTCGGTTGTTTTGAAAGAAACAGCTGACTGTATTTTTGTGAACTTAGTCATTTATTGTGCATAACATTACCATGGCTGTGAGTGCACACTGTGGAAAAGCCCTCTTGGTTTTATATGAAgtataatactgtaaataatcgaattgtaattattaatattctcaaaaagtacatattttgtaTTTGGGAAATCATGCTGAATGATCCAGAGGGTTGTAAAAAGGTTTTCTCTGATACTGTAACATTCCATCcccttttcctttcctttttgaCCAAAGTGAATGGCTGATATTGGTCTTTTAACGCAGCGTTTTCGAAAGCTATTTCCTCTTTATATGAAAAATTGtcttatttttgtatttgatagctatttattttttttaatcagatatCGGTGATGCATGAAGccagtataaaatatatttgtataggCTGAAGCGAGTACGAATTAAAAGGCAGAGCAGAAACGGTTgtgctttttattcattttctcacTGTGACATGTCGATCCGTCTTTGAGAGAGCGTTTTTAAGTTTTCTAGGACctgttatttttttcagaattggTAGAGGTAAATACGATCTGCAGTTTTCAGAAATCGGTTGTCATCCACATCTGCATAGCTCAGGAAAATAAGTACTGAAATATTAAAGGATGTTAAATAGCTGTCACTTTCAATTAGAGAATCATTCATTAAACTCAGAATATTTAC
>TCONS_00064056
AGGAAAAGGTTGTGGAGTTTTTAACAGAAGCCTCTAAACGCAGCGGAGATGAAGCTGGTGTCGACGCCATTCCTGAAGGATCTCACATCAAAGACAATGAACAGGCTCTCTATGAATTGTTTAAATGCAACTTTAATGCAGATGAAGCTTTAAAAAGGCTGAAATTTGATGTAAAGCCTGCTAAAGAGGAAATGTCAGTTTGGACGGAAGAGGAGTGTCGAGGTTTTGAGCAGGGACTCAAAGATTATGGAAAAGATTTCAGCTCAATACAAGCAAATAAGCAGATCAAGCTTGGGAAAAGAAAATACAGCCTTCGTCCTGGAGTTTTGGATTATATGGAGTGTTTTTTGGATGAGAAGGAAAGCTCTGAGTCTGGTGGATCTTCTTTATCACTTCCTACCACATCAAACAACAGCAAAAACCCACTGGAGCCAGAAAGTGACTCTAACGCTCAGAATGGTGTAGAGAACCATTCCTCCGAGCCTCTTCTCTGTGTCAAAGATGAGACTTCTCATACAAACGGCTCCACCGCACGTCCAGAAATATCCATAACACACACACCACCCGACTGTAACCTCAACATGAGCAGCCCAAACACACGAATAGTGGAGATCACAGTCATGCAGGAGGAACAACCTCTGAAGAAGCTTAGGATTGAGACAGACCCAAACACTGAAGTCGCCCTCAACAAAGCTGAAATCGTCTGACTCGCCAGCAAATCCCAGAACTCCTGACCTCAGATAGCCTGCCCTGTTTTCAGCATGACGGTAGctgag
>TCONS_00064055
AGGAAAAGGTTGTGGAGTTTTTAACAGAAGCCTCTAAACGCAGCGGAGATGAAGCTGGTGTCGACGCCATTCCTGAAGGATCTCACATCAAAGACAATGAACAGGCTCTCTATGAATTGTTTAAATGCAACTTTAATGCAGATGAAGCTTTAAAAAGGCTGAAATTTGATGTAAAGCCTGCTAAAGAGGAAATGTCAGTTTGGACGGAAGAGGAGTGTCGAGGTTTTGAGCAGGGACTCAAAGATTATGGAAAAGATTTCAGCTCAATACAAGCAAATAAGATCAAGCTTGGGAAAAGAAAATACAGCCTTCGTCCTGGAGTTTTGGATTATATGGAGTGTTTTTTGGATGAGAAGGAAAGCTCTGAGTCTGGTGGATCTTCTTTATCACTTCCTACCACATCAAACAACAGCAAAAACCCACTGGAGCCAGAAAGTGACTCTAACGCTCAGAATGGTGTAGAGAACCATTCCTCCGAGCCTCTTCTCTGTGTCAAAGATGAGACTTCTCATACAAACGGCTCCACCGCACGTCCAGAAATATCCATAACACACACACCACCCGACTGTAACCTCAACATGAGCAGCCCAAACACACGAATAGTGGAGATCACAGTCATGCAGGAGGAACAACCTCTGAAGAAGCTTAGGATTGAGACAGACCCAAACACTGAAGTCGCCCTCAACAAAGCTGAAATCGTCTGACTCGCCAGCAAATCCCAGAACTCCTGACCTCAGATAGCCTGCCCTGTTTTCAGCATGACGGTAGctgag
>TCONS_00064057
AATTGCAGCAAATAACGCGTCTGGGAGAATCGCGTAATGTTTAAATCAACGTatcttaatttttcattttagtcTATTGAACCATTACGTATTTCTTAACATTCGAGCTCTgaataattagcaaacagtttaagGCGCCCAATTTGAATGTGTTAGCAGCTAGCAGCTAACTTGTTGCCTGAGCGCCAAACTCACATCCAGcccTCCTTAAGTGCTTCAGGCTCAGAAGgaGCACATGCAGTGGTCCAGGATGAGGACAAAGACTTTGATCCTTCTGCAGACATGCTTGTGCATGATTTTGATGATGAGCAGACTCTGGAGGAGCAGGAAAAGCTGGAGGGAGAGACCAACTTCACCAATGAAATTGATGACCTCACTCGAGAGGGTGAGATGCCCATCGAAGAGCTTCTGAAACTGTACGGCTACAGCAGTGGTGCCTCtccagaggaagaggaggaagatgTGGAGGAGGAAGATTCCACAGAGAACGCTTGCAGCAAAGTGGAGGAAAAGCCAGAGCTTTCTGACCAGGAGGAGGTTGAAGATGTGCAGTCATCTGGTGAGGAGCCTCCGTCAGGCAGTGTGTCTCACAGCACTGCTCTGCTCATCTGTTCTCGGCCATCCACTTACTTTGAAGGTTATGAGGAAGAATCTGAAGATGAAGAGTATATTCCATCTGAAGACTggaagaagGAGATTATGGTTGGTTCAATGTACCAAGCGGAGACTCCTGTTGGCTTGTGTAAATACAAAGACAATGAAAAaggta

Function

symbol description
mier1a Predicted to enable histone deacetylase binding activity and transcription corepressor activity. Predicted to be involved in histone deacetylation and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of transcription repressor complex. Predicted to be active in nucleoplasm. Orthologous to human MIER1 (MIER1 transcriptional regulator).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0016575 histone deacetylation biological_process
GO:0017053 transcription repressor complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0042826 histone deacetylase binding molecular_function
GO:0003714 transcription corepressor activity molecular_function
GO:0001103 RNA polymerase II repressing transcription factor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-409 Predicted to enable histone deacetylase binding activity and transcription corepressor activity. Predicted to be involved in histone deacetylation and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of transcription repressor complex. Predicted to be active in nucleoplasm. Orthologous to human MIER1 (MIER1 transcriptional regulator).

Ensembl:

ensembl_id ENSDARG00000041072

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064053 False 4419 mRNA 0.36 13 34823721 34838413
TCONS_00064054 False 2454 mRNA 0.42 13 34825754 34838397
TCONS_00064056 False 776 processed_transcript 0.45 6 34826655 34832346
TCONS_00064055 False 773 processed_transcript 0.45 6 34826655 34832346
TCONS_00064057 True 769 processed_transcript 0.46 7 34833148 34838299
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_032966 NA coding downstream 5532 34817183 ~ 34818189 (-)
XLOC_032965 NA coding downstream 171582 34649795 ~ 34652139 (-)
XLOC_032964 CR385041.1 coding downstream 179351 34644253 ~ 34644370 (-)
XLOC_032963 dmrt2b coding downstream 603080 34213971 ~ 34220641 (-)
XLOC_032962 NA coding downstream 645823 34158617 ~ 34177898 (-)
XLOC_032968 slc35d1a coding upstream 8863 34847276 ~ 34860590 (-)
XLOC_032969 serbp1a coding upstream 93184 34931597 ~ 34938746 (-)
XLOC_032970 hsd17b7 coding upstream 104938 34943351 ~ 34958274 (-)
XLOC_032971 ddr2a coding upstream 121612 34960025 ~ 35032792 (-)
XLOC_032972 uap1 coding upstream 195044 35033457 ~ 35052388 (-)
XLOC_032955 CR855206.1 non-coding downstream 1097573 33726047 ~ 33726148 (-)
XLOC_032973 NA non-coding upstream 246619 35085032 ~ 35090195 (-)
XLOC_032979 NA non-coding upstream 910653 35749066 ~ 35749921 (-)
XLOC_032980 CU137680.2 non-coding upstream 1072085 35910498 ~ 35914713 (-)
XLOC_032981 NA non-coding upstream 1282906 36121319 ~ 36124890 (-)
XLOC_032983 BX936433.2 non-coding upstream 1449125 36287538 ~ 36290625 (-)

Expression

Expression of XLOC_032967(mier1a) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Expression of XLOC_032967(mier1a) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Co-expression Network