G1398341


Basic Information

Item Value
gene id G1398341
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 62173164 ~ 62177424 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1596867
TTCCAATCCATTTGCATTTATTTTCTCTCTATCACATTTACATCACATCATCATCATGACATCAAGTCACCCATCCACTCGAGCACATGTCAGACAGACATGAGCAATAAAACACTTCTGCACCAGACATAATGAGagcacatcaatcaatcaatatgaACAAGATAATAAAGCAACCAAAAGAAAGTAAGTTTCCCTCCCACCAACCACAATGCTCTGACACAGCACAGCAAGagaacaacagtcagacagttaCAACAAGAAAACAGAtaaaagacaaagacaaacagcacaGATTGGTGTGTTGTTTAAGAGCATGATAGAAGAAGCAGCACAGAGTTGAGTGGAGCCTCCATAGTGATGACGATGTGTTACATTTGATTTGGTTGGAGATCCATTGGCTTTGCTGCTGCTGAGCTGCTGGGCTGGACTCATCAACATGGACATTCAACGAGCAAACAAAGGATAGAATGATGTAACATTAGGAAATAAAGGCTTTCTTTCTGCACATTTCAAGGGCTCGGTTAGCTTAATATACTgggtattgactttggggggggggaacTACAGTCAATACTGATAGTTtaaaagagagagacgggggaaacAATTAGAGAAAAATAGAttgggagatagagaggaagcgAGTCAGAGGGAAAGGTACAGGTACAATTTGGTGGCATGTAgcttagcggttaagagtgttgggccaataaccgaaaggttgcgagtttgaatccccgagccgccTAGGTGATTTGTTTCCCACAAAAGACAATGACAACATGTATTCGAATAAATACTTATTTGGCAGGGAGACAGAAAAAGTAGGTAGCACATTTTCTGAAACGCCTGTGTACAATACATTATGACTGCATTCATAGCACAGTCGATCACTCCATAGTGTATTATAAGACTTGCCATAAGCATTCACAACAGCTCACGGTTCCTATACACTGGGTGTCATTTCatcgtctagttttgatttacatttggttgagttgtcaactaacgtgaattcaacgtgaaatcaacaaaacatttcaccatgttaTTGGATCTagtttaaaagttgggtgaaaaaattACGAAATTCCCTTACATTTTACAAACCCAATcaattttccacgttgattcaaaaGTCATCACATttcatgtttttgttgaaatgacgtggaaacaacgttgattcaaccagtttttgtccAGTGGGTTCTGACCACTTACATAACCAAAATACATAACACCTTTATAAGCACATTCAATATGTGCattaaagtagtgcagtatatggCCTGCTATAAGCATTCATAACAGTTCATGACTCCTTATAACAGCCTAAATAAAGGCCTACATACCAATAAATGCATTCATAATAGATCACACCAGGTGACTCACAGAAAGGTCACCAAAAGGTCAAGTTAGTTCTTGTTAGAATTAAAGCGTCTCATTGCACAATGTAAGAAGGTTAATGGGCAATTACATGGTAACAGAATTATGCTGAGACtaagatttttcactttaaaatgtatgtcaaacaaaaccaatgattgcaaagttaaacaaaccatacaactctatgcacaaggactactttgaacaatttccactgaatatttgacaaaaacacatttacttgaagaacagtgcagatgctaAATTTGGCACCAGaatgacagtttgtgctgtttgtgCCATCATTCTGTCAGAGTGCACTAACAGTAGAAACTAGCCAGCGTTACAACAAGAAACAAGCTTTTCTTTTTGTAGGTTTTACATTCATCTACGTTATTTCGCCACTTTTCCCCTGAACTGCAATATATGTTATATTAACTACAGCTTCTCAAACACGCACACCAACAATCTGAGCAATTCTACCTTACAAAGTTTCATTTTTGTTTAACAGACACACAACAATATATGAAAAAAGTTTCAGGGTTGTCTTTACGTTGCATATGTACAGGAAAGGCCTGAAACTACAAATCCATCTCGAATAATCGTCACTGCTTGTCCCACTCTTTCTCCACCTATTACAAAGTCCCAGTTCCACAAACACACCCAATCAGCCCTCTCTCTACAATCCAAAACCTCAGGTCTCCTAAAAACAGCCGTAGGGATGGCAGTTATCACTCAAACCCACCTGACCCTCCCCTATTCCATACCAGGTCAACTTACTGTGGGTGAGGCCTTAGATTCATCCAGTTTATCAATGTAGGTAGTAGCAAGTGGATAAAGAGTGTTCCCCTTCATTAGCCCTGGCCAATGACCCATAAAACCACTTTAGTGCAATTAAATACCAGAGGCGGGTTTTGTGGCAGGCATAGGGGTGTGAATGAGATtgggaacaacagactagatTGGTCTGAAAAGTACTCAAACGTATGAATGGCCAATCTGCTGCCAGTAGGACCAAACACAAGATTGATGTTTCGATTGGTGGAGAAGAGTCAAGTCCGGAAAGAAAACCTATTCTCTGTACACTACCTCATCTCAATAAAGTGTGAAAGAGGCAAGCGCCTTTTAGGCAAAGGAAGACTAAACTAAATTCTTGTGAAAGCAGTGTATGAGTATGCTACATAAGGAAGGAAGACTAAACTAAATTCTTGTGAAAGCAGTGTATGAGTATGCTACATAAGGAAGGAAGACTAAACTAAATTATTGTGATAGCAGTGTATGAGTATGCTCCGTAAGGAAGGAAGTCTAAACTAAATGCTTGTGAAAGCAGTGTATGAGTATGCTACGTAAGGAAGGAAGACTAAACTAAATTCTTGTGAAAGCAGTGTATGAGTATGCTACGTAAGGAAGGAAGACTAAACTAAATTCTTGTGAAAGCAGTGTATGAGTATGCTACGTAAGGAAGGAAGACTAAACTAAATTCTTGTGAAAGCAGTGTATGAGTATGCTACGTAAGGAAGGAAGACTAAACTAAATTCTTGTGAAAGCAGTGTATGAGTATGCTCCGTAAGGAAGGAAGACTAAACTACATTCTTGTGAAAGCAGTGTATGAGTAGGCTCCGTAGGGAAAGCCCATAGTGTTGAAACACCATGATTTATCTGTTCTTAAGAAGACAACAAGCAACCATTGACTAACTGAGGGCTACCTCTGGACCAGTGTTTCCCCATATATTACCAAGTTAGGGCAGACCATCTGAGATGTGACTTCAGGGGTCTTCTTGGTGCACCaccacaatagaaaagtctaggGGAAACCCGGACACACAAAGTACCGCTGTACT
>TU1596868
TTCCAATCCATTTGCATTTATTTTCTCTCTATCACATTTACATCACATCATCATCATGACATCAAGTCACCCATCCACTCGAGCACATGTCAGACAGACATGAGCAATAAAACACTTCTGCACCAGACATAATGAGagcacatcaatcaatcaatatgaACAAGATAATAAAGCAACCAAAAGAAAGTAAGTTTCCCTCCCACCAACCACAATGCTCTGACACAGCACAGCAAGagaacaacagtcagacagttaCAACAAGAAAACAGAtaaaagacaaagacaaacagcacaGATTGGTGTGTTGTTTAAGAGCATGATAGAAGAAGCAGCACAGAGTTGAGTGGAGCCTCCATAGTGATGACGATGTGTTACATTTGATTTGGTTGGAGATCCATTGGCTTTGCTGCTGCTGAGCTGCTGGGCTGGACTCATCAACATGGACATTCAACGAGCAAACAAAGGATAGAATGATGTAACATTAGGAAATAAAGGCTTTCTTTCTGCACATTTCAAGGGCTCGGTTAGCTTAATATACTgggtattgactttggggggggggaacTACAGTCAATACTGATAGTTtaaaagagagagacgggggaaacAATTAGAGAAAAATAGAttgggagatagagaggaagcgAGTCAGAGGGAAAGGTACAGGTACAATTTGGTGGCATGTAgcttagcggttaagagtgttgggccaataaccgaaaggttgcgagtttgaatccccgagccgccTAGGTGATTTGTTTCCCACAAAAGACAATGACAACATGTATTCGAATAAATACTTATTTGGCAGGGAGACAGAAAAAGTAGGTAGCACATTTTCTGAAACGCCTGTGTACAATACATTATGACTGCATTCATAGCACAGTCGATCACTCCATAGTGTATTATAAGACTTGCCATAAGCATTCACAACAGCTCACGGTTCCTATACACTGGGTGTCATTTCatcgtctagttttgatttacatttggttgagttgtcaactaacgtgaattcaacgtgaaatcaacaaaacatttcaccatgttaTTGGATCTagtttaaaagttgggtgaaaaaattACGAAATTCCCTTACATTTTACAAACCCAATcaattttccacgttgattcaaaaGTCATCACATttcatgtttttgttgaaatgacgtggaaacaacgttgattcaaccagtttttgtccAGTGGGTTCTGACCACTTACATAACCAAAATACATAACACCTTTATAAGCACATTCAATATGTGCattaaagtagtgcagtatatggCCTGCTATAAGCATTCATAACAGTTCATGACTCCTTATAACAGCCTAAATAAAGGCCTACATACCAATAAATGCATTCATAATAGATCACACCAGGTGACTCACAGAAAGGTCACCAAAAGGTCAAGTTAGTTCTTGTTAGAATTAAAGCGTCTCATTGCACAATGTAAGAAGGTTAATGGGCAATTACATGGTAACAGAATTATGCTGAGACtaagatttttcactttaaaatgtatgtcaaacaaaaccaatgattgcaaagttaaacaaaccatacaactctatgcacaaggactactttgaacaatttccactgaatatttgacaaaaacacatttacttgaagaacagtgcagatgctaAATTTGGCACCAGaatgacagtttgtgctgtttgtgCCATCATTCTGTCAGAGTGCACTAACAGTAGAAACTAGCCAGCGTTACAACAAGAAACAAGCTTTTCTTTTTGTAGGTTTTACATTCATCTACGTTATTTCGCCACTTTTCCCCTGAACTGCAATATATGTTATATTAACTACAGCTTCTCAAACACGCACACCAACAATCTGAGCAATTCTACCTTACAAAGTTTCATTTTTGTTTAACAGACACACAACAATATATGAAAAAAGTTTCAGGGTTGTCTTTACGTTGCATATGTACAGGAAAGGCCTGAAACTACAAATCCATCTCGAATAATCGTCACTGCTTGTCCCACTCTTTCTCCACCTATTACAAAGTCCCAGTTCCACAAACACACCCAATCAGCCCTCTCTCTACAATCCAAAACCTCAGGTCTCCTAAAAACAGCCGTAGGGATGGCAGTTATCACTCAAACCCACCTGACCCTCCCCTATTCCATACCAGGTCAACTTACTGTGGGTGAGGCCTTAGATTCATCCAGTTTATCAATGTAGGTAGTAGCAAGTGGATAAAGAGTGTTCCCCTTCATTAGCCCTGGCCAATGACCCATAAAACCACTTTAGTGCAATTAAATACCAGAGGCGGGTTTTGTGGCAGGCATAGGGGTGTGAATGAGATtgggaacaacagactagatTGGTCTGAAAAGTACTCAAACGTATGAATGGCCAATCTGCTGCCAGTAGGACCAAACACAAGATTGATGTTTCGATTGGTGGAGAAGAGTCAAGTCCGGAAAGAAAACCTATTCTCTGTACACTACCTCATCTCAATAAAGTGTGAAAGAGGCAAGCGCCTTTTAGGCAAAGGAAGACTAAACTAAATTCTTGTGAAAGCAGTGTATGAGTATGCTACATAAGGAAGGAAGACTAAACTAAATTCTTGTGAAAGCAGTGTATGAGTATGCTACATAAGGAAGGAAGACTAAACTAAATTCTTGTGAAAGCAGTGTATGAGTATGCTCCGTAAGGAAGGAAGACTAGACTAAATTATTGTGAAAGCAGTGTATGAGTATGCTACGTAAGGAAGGAAGAATAAACTAAATTCTTGTGAAAGCAGTGTATGAGTATGCTACGTAAGGAAGGAAGTCTAAACTAAATTCTTGTGAAAGCAGTGTATGAGTATGCTCCGTAAGGAAGGAAGACTAAACTAAATTCTTGTGAAAGCAGTGTATGAGTATGCTACGTAAGGAAGGAAGACTAAACTAAATTCTTGTCAAAGCAGTGTATGAGTATTCTCCGTAAGGAAGGAAGACTAAACTAAATTCTTGTGAAAGCAGTGTATGCTACGTAAGGAAGTCTAAACTAAATTCTTGTGATAGCAGTGTATGAGTATGCTCCGTAAGGAAGGAAGACTAAACTAAATTCTTGTGAAAGCAGTGTATGAGTATGCTACGTAAGGAAGGAAGACTAAACTAAATTCTTGTGAAAGCAGTGTATGAGTATGCTACGTAAGGAAGGAAGACTAAACTAAATTCTTGTGAAAGCAGTGTATGAGTATGCTACGTAAGGAAGGAAGACTAAACTAAATTCTTGTGAAAGCAGTGTATGAGTATGCTCCGTAAGGAAGGAAGACTAAACTACATTCTTGTGAAAGCAGTGTATGAGTAGGCTCCGTAGGGAAAGCCCATAGTGTTGAAACACCATGATTTATCTGTTCTTAAGAAGACAACAAGCAACCATTGACTAACTGAGGGCTACCTCTGGACCAGTGTTTCCCCATATATTACCAAGTTAGGGCAGACCATCTGAGATGTGACTTCAGGGGTCTTCTTGGTGCACCaccacaatagaaaagtctaggGGAAACCCGGACACACAAAGTACCGCTGTACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1596867 False 3236 lncRNA 0.40 2 62173164 62177424
TU1596868 True 3556 lncRNA 0.39 4 62173164 62177424

Neighbor

gene id symbol gene type direction distance location
LOC110492510 LOC106566591 coding downstream 229343 61814544 ~ 61943821 (-)
LOC110492496 LOC106566592 coding downstream 376449 61779118 ~ 61796715 (-)
LOC110492507 LOC106566595 coding downstream 484085 61687247 ~ 61689079 (-)
LOC110492509 LOC106566095 coding downstream 571741 61595093 ~ 61601423 (-)
dnah12 dnah12 coding downstream 578343 61558700 ~ 61594821 (-)
LOC110529871 zbtb46 coding upstream 3805 62181229 ~ 62311208 (-)
uckl1b uckl1 coding upstream 151364 62328788 ~ 62386980 (-)
LOC118939568 NA coding upstream 164942 62342366 ~ 62347109 (-)
LOC110492495 znf512b coding upstream 210004 62387428 ~ 62459484 (-)
LOC118939569 samd10 coding upstream 292526 62469950 ~ 62665506 (-)
G1398361 NA non-coding downstream 13030 62159830 ~ 62160134 (-)
G1398279 NA non-coding downstream 114561 62057903 ~ 62058603 (-)
G1398245 lime1 non-coding downstream 124918 62047478 ~ 62048246 (-)
G1398255 NA non-coding downstream 155497 62016161 ~ 62017667 (-)
G1398250 NA non-coding downstream 162450 62010469 ~ 62010714 (-)
G1398372 NA non-coding upstream 33961 62211385 ~ 62211971 (-)
G1398378 NA non-coding upstream 42085 62219509 ~ 62220378 (-)
G1398395 NA non-coding upstream 76372 62253796 ~ 62254800 (-)
G1398399 NA non-coding upstream 79042 62256466 ~ 62260463 (-)
abhd6b LOC106566659 other downstream 1418293 60753006 ~ 60758788 (-)
G1396543 NA other downstream 1479128 60693609 ~ 60694036 (-)
LOC118939463 NA other downstream 1509648 60661556 ~ 60672085 (-)
G1396467 NA other downstream 1591129 60554756 ~ 60582035 (-)
G1394978 LOC106566621 other downstream 2816315 59354200 ~ 59356849 (-)
G1398619 NA other upstream 557319 62734743 ~ 62735569 (-)
G1399235 NA other upstream 1021695 63199119 ~ 63292201 (-)
G1399367 NA other upstream 1207425 63384849 ~ 63385262 (-)
G1400503 zhx3 other upstream 1925946 64103370 ~ 64105039 (-)
G1400552 NA other upstream 2079502 64256926 ~ 64257433 (-)

Expression


Co-expression Network