G1398487


Basic Information

Item Value
gene id G1398487
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 62465253 ~ 62468173 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1597103
AGCTGTAGACCTGAATATAATGTAGACCTATACCTTTAGCATTTTATAAACAGAGGATTTTGATAGGTCATGCTATGACAGATGTTTGCTGTGATTGTTTCTGCCCTAGCTGTATTTGATAAAGCAATAATCAGAGATGTAGCTGGCCAAAAGCAATGGTTATATTCTACTAGTATGAGTCAAATGCCTACATCTCCCATGATGCAGTAGAAGTATACTGTAGTTACAACTCCATTGTGTAAAAATAATCAATTTTTGTGTGTTTCTCATAACACCAGAAGTGCACAACTCCAGTTCTCGAGGGCTCCTAtcctgctggtctctctctctctctctctctctctctttctctctttctctctctctctcattgatcAGTTAGTGTAACTAATTGACTATAGATTCCACACACCTGGTAGCCCAAGGAATCAACTTGTCATTGAAAGGGAGCATATGGTGTATACTGTTCGCCCTGGAGGACTGAAGCTATGCACCTCCACCCTACACCATGTCTCTCATTGATAGCTATACATATTACAGAGATTATTGAGAGGAACCAGACCAGCTGCCTGCTATTACTGTCACACTGTGAATCCAGACACCTTTACTGTGCTTCATAAACATACCAGAAATCACATACTCAGCATGAGCGTAACTAAAGATCCTCTGAAGAAAGCAACATGGGCCAAtacacaggtaactgacaaaatgaAGGAAATGCTTGAGTAAATGAGAGATACAAAGTATatttgaaagcaggtgcttccacaaaggtgtggttcctgagttaattgaGCAATTAACATCTCATCATGCTTAGGTGTCATGTATACAAATCCTCAGTTGACCGTTACTtcggctaccatggctagaaggaAAGATCTCAGTGAGTCTCAAatgagcatagggggtttaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagtcaccagatctcaacccaattgaacacttgtggtagattctggagcggcgcctgagacagcgttttccactatcaacaaaacaccaaatttctcctggaagaatggtgtcacatccctctaCTAGAGTTCCAGAcaatctatgccaaggcacattgaagctaTTCTGGTGGCTGGTGATGCCCCAACCATGCAACTTCATCTCACACTTTCACTTTGAGATTTGACGTAATTGGATGAATGTCAATGTTTTTTGACCCATTTATTCCCAACGCTCTATTTGACACTTTATTtaggtgtttcctttattttgacagttacatgtacagtatgtgtttttgTTTCATTACGAAAATGAAGGTTACATTTTCAGAATTGATGTTGAAGGGGAGCAGGTCTTCTATGGTTGAGCATAGAACTATTCTGGGGAACaggctacccactgggcacacatgttgaatcaacgttgtttccatgtcatttcaattaaattactttgaaccaacgtggaatagacgttgaattgacatctgtaaCCAGTGGGAAGGCTCCCATCCTTTCCTCCCTTCCCgccctcaatccctccctctacccctccctcaatccctccatctacccctccctctatcccttcctctatccctctctctatccctccctatctctatccctctctctatccctccctatctctatccctccctctacccctcactATCCCTCTCGCTATCcctccctatctctatccctccctctatccctccctctacccctccctctacccctccctctatccctccctctatccctccctctatccctccctctatccctccctctacccctccctctatccctccctctacccctccctctatccctcccttcagTTGACAAGGACTGTCTGAATGAGGAAACAACTTGACTGTTAAGTGGAAAATACACTGTTATACATTTGTAGATGTGTACAGACACTTCTATTATTTGTTTGTTTACTTTTTCAGATCAAGGATGGGGTTGTTTGTTTTCGATATGTTAAGGAAAAGGGTTTTAAAGATATGATTATTTACTTGCTGTACAGATGTTAAGAAGAGATATGGAATATggagaattttttttaaataaagtaatGCATATTCATGA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1597103 True 2121 lncRNA 0.42 2 62465253 62468173

Neighbor

gene id symbol gene type direction distance location
LOC110492495 znf512b coding downstream 5769 62387428 ~ 62459484 (-)
uckl1b uckl1 coding downstream 78273 62328788 ~ 62386980 (-)
LOC118939568 NA coding downstream 118144 62342366 ~ 62347109 (-)
LOC110529871 zbtb46 coding downstream 154045 62181229 ~ 62311208 (-)
LOC110492510 LOC106566591 coding downstream 521432 61814544 ~ 61943821 (-)
LOC118939569 samd10 coding upstream 1777 62469950 ~ 62665506 (-)
b4galt5 LOC106566571 coding upstream 491792 62959965 ~ 63008499 (-)
LOC110492520 LOC106566548 coding upstream 956738 63424911 ~ 63429527 (-)
LOC110492523 dhx35 coding upstream 1596077 64064250 ~ 64081609 (-)
LOC118939600 NA coding upstream 1598013 64066186 ~ 64066289 (-)
G1398473 NA non-coding downstream 30089 62434144 ~ 62435164 (-)
G1398462 NA non-coding downstream 69198 62394625 ~ 62396055 (-)
G1398443 NA non-coding downstream 128181 62335940 ~ 62337072 (-)
G1398420 NA non-coding downstream 171972 62292980 ~ 62293281 (-)
G1398399 NA non-coding downstream 204790 62256466 ~ 62260463 (-)
G1398520 NA non-coding upstream 32057 62500230 ~ 62501553 (-)
G1398486 NA non-coding upstream 51932 62520105 ~ 62641136 (-)
G1398549 NA non-coding upstream 160842 62629015 ~ 62633212 (-)
G1398556 NA non-coding upstream 173090 62641263 ~ 62641829 (-)
G1398588 prpf6 non-coding upstream 230529 62698702 ~ 62699356 (-)
abhd6b LOC106566659 other downstream 1710382 60753006 ~ 60758788 (-)
G1396543 NA other downstream 1771217 60693609 ~ 60694036 (-)
LOC118939463 NA other downstream 1801737 60661556 ~ 60672085 (-)
G1396467 NA other downstream 1883218 60554756 ~ 60582035 (-)
G1394978 LOC106566621 other downstream 3108404 59354200 ~ 59356849 (-)
G1398619 NA other upstream 266570 62734743 ~ 62735569 (-)
G1399235 NA other upstream 730946 63199119 ~ 63292201 (-)
G1399367 NA other upstream 916676 63384849 ~ 63385262 (-)
G1400503 zhx3 other upstream 1635197 64103370 ~ 64105039 (-)
G1400552 NA other upstream 1788753 64256926 ~ 64257433 (-)

Expression


Co-expression Network