G1398520


Basic Information

Item Value
gene id G1398520
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 62500230 ~ 62501553 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1597141
tgcagagaagagaccagatgaggaatcagtggttaaggataaacataaGCCTTTACTAAGAAACGGTAGCCgcaggatcacagtacacttgaaaaaGCAACAAACACTAAGTCTCAAAAACTCACTCAGAAAACGACCACACACAGTAAGCgattcaagcttctgcaaagagaaccagaaaacacacctcttttaaaGGGGAAATCATAATGAGTAATAGAACACACCTGAGGGTCATAATTGTCTCTAGGATAGTCTCTAGGATGGTCTCTAGGATAGTCTCTAGGATGACCTTCTGGTGACGGGTGGAACCATGACAATTTTAGGTTcaggggttagaattagggttaggggtaaagTGGTTCGGTTTAGGGTTAGATACATTGTCATCACCACAACTAATGTTCACACATGATCACTCAGTCACCACAGCTAATGTTCACACATGATCACTCAGTCACCACAACTAATGTTCACACATGATCACCCAGTCACCACAACTAATGTTCACACATGATCACTCAGTCACCACAGCTAATGTTCACACATGATCACCCAGTCACCACAACTAATGTTCACACATGATCACTCAGTCACCACAACTAATGTTCACACATGATCACTCAGTCACCACAACTAATGTTCACACATGATCACTCAGTCACCACAGCTAATGTTCACACATGATCACTCAGTCACCACAGCTAATGTTCACACATCCGATCACTCAGTCACCACAGCTAATGTTCACACATCCGATCACTCAGTCACCACAACTAATGTTCACACATCCGATCACTCAGTCACCACAACTAATGTTCACACATGATCACTCAGTCACCACAACTAATGTTCACACATGATCACTCAGTCACCACAACTAATGTTCACACATGATCACTCAGTCACCACAACTAATGTTCACACATGATCACTCAGTCACCACAACTAATGTTCACACATGATCACTCAGTCACCACAACTAATGTTCACACATGATCACTCAGTCACCACAACTAATGTTCACACATGATCACTCAGTCACCACAACTAATGTTCACACATGATCACTCAGTCACCACAACTAATGTTCACACATGATCACTCAGTCACCACAACTAATGTTCACACATGATCACTCAGTCACCACAACTAATGTTCACACATGATCACTCAGTCACCACAACTAATGTTCACACATCCGATCACTCAGTCACCACACAAAGAGTGCACTGacacaacaaaataaaaaatcatGGCTTCTGTCTCCTTGATGCTTGTTtccatgtt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1597141 True 1290 lncRNA 0.42 2 62500230 62501553

Neighbor

gene id symbol gene type direction distance location
LOC110492495 znf512b coding downstream 40746 62387428 ~ 62459484 (-)
uckl1b uckl1 coding downstream 113250 62328788 ~ 62386980 (-)
LOC118939568 NA coding downstream 153121 62342366 ~ 62347109 (-)
LOC110529871 zbtb46 coding downstream 189022 62181229 ~ 62311208 (-)
LOC110492510 LOC106566591 coding downstream 556409 61814544 ~ 61943821 (-)
b4galt5 LOC106566571 coding upstream 458412 62959965 ~ 63008499 (-)
LOC110492520 LOC106566548 coding upstream 923358 63424911 ~ 63429527 (-)
LOC110492523 dhx35 coding upstream 1562697 64064250 ~ 64081609 (-)
LOC118939600 NA coding upstream 1564633 64066186 ~ 64066289 (-)
rab5if cssa13h20orf24 coding upstream 1586631 64088184 ~ 64092123 (-)
G1398487 NA non-coding downstream 32057 62465253 ~ 62468173 (-)
G1398473 NA non-coding downstream 65066 62434144 ~ 62435164 (-)
G1398462 NA non-coding downstream 104175 62394625 ~ 62396055 (-)
G1398443 NA non-coding downstream 163158 62335940 ~ 62337072 (-)
G1398420 NA non-coding downstream 206949 62292980 ~ 62293281 (-)
G1398486 NA non-coding upstream 18552 62520105 ~ 62641136 (-)
G1398549 NA non-coding upstream 127462 62629015 ~ 62633212 (-)
G1398556 NA non-coding upstream 139710 62641263 ~ 62641829 (-)
G1398588 prpf6 non-coding upstream 197149 62698702 ~ 62699356 (-)
G1398587 prpf6 non-coding upstream 202399 62703952 ~ 62706377 (-)
abhd6b LOC106566659 other downstream 1745359 60753006 ~ 60758788 (-)
G1396543 NA other downstream 1806194 60693609 ~ 60694036 (-)
LOC118939463 NA other downstream 1836714 60661556 ~ 60672085 (-)
G1396467 NA other downstream 1918195 60554756 ~ 60582035 (-)
G1394978 LOC106566621 other downstream 3143381 59354200 ~ 59356849 (-)
G1398619 NA other upstream 233190 62734743 ~ 62735569 (-)
G1399235 NA other upstream 697566 63199119 ~ 63292201 (-)
G1399367 NA other upstream 883296 63384849 ~ 63385262 (-)
G1400503 zhx3 other upstream 1601817 64103370 ~ 64105039 (-)
G1400552 NA other upstream 1755373 64256926 ~ 64257433 (-)

Expression


Co-expression Network