XLOC_032969 (serbp1a)


Basic Information

Item Value
gene id XLOC_032969
gene name serbp1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 34931597 ~ 34938746 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064059
TGCTTTGCGGTCAGAGTCCCGGATGAATTCACGCCGGAAGAGAAGCGCAAGTCTTTTCCAGCCATCTTGTGGCATCTAGCAGCGAAGTGCTCGCTCAAGCCCCGTAGAATCGGAGGAGAATCCTGCTGAAAGGGGGCCATCATGCCCGGACATCTGCAAGAAGGTTTCGGCTGTGTCGTAACCAATCGGTTCGACCAGCTATTTGATGACGAAGAGGATCCGTTCGAGGTGTTAAAGCAGGcagaaaagaagaagaaggacGCGACCGTCCCTGGTGCCGCAAAGACCGCCGCGCAGGCTGCTAAGCAGCCCAAAAAGGAGTCGCAGAAGGAGAGGAGAAACCCGCTTCCCGATAAAAAGGAAGAAACACAAGCCCCCGTTCCTCTCAAGAAAGATGGCATGAGGAAGATGGGCCGCCGGCCTGAGCAGCAGGGTCAACAAGGatcccagcagcagcagcagcaacagcaggtGCCTCAGCAGCAGGCAGGACAGGGGGAGGGTCGTCCACCAGCAGACAGGCGGCCTGACAGGAGGCCACCACGTGAACGACGCTTTGACAAACCCGCTGATGAAAAACCTGCTGAGGGTGGAGAATTCTCAGTTGAGAAGACTATGGGTGACAGGCCATTCCGGGGTCGTGGAGGTCCCCGAGGGGGGCGCGGAGGGCGAGGCAGAGGTGTTGGCAGGACTGACGGCTTTGACTCGCGCGGCAAACGAGAGTTTGACAGACACAGCGGCAGCGACCGATCcAGCCTGAAAGCAGAGGAGAAACGTGGAGGCAGTGGATCTCATAACTGGGGCACTGTTAAGGATGAGTTGAGTGAGCTTGACCAATCAAACGTCACCGAGGACACCCCTGAAGGAGAAGAACACCCACCTGCTGACTCGGAGAACAAGGAGAATGAGGTTGAAGAAGCAAAAGAAGAAGGCCCTAAGGAGATGTCTCTGGATGAATGGAAGGCCCAGCAGGATAAAGAGAGAGCCAAAGTGGAATTCAACATTCGTAAGGCAAATGAGGGAGCTGACTGGAAGAAAGGATACGTTCTGCACAAGTCCAAGGCTGAGGATGCCTCTGCTGATGATGCTGCTGGTGACCATCACTTCCGCAAACCTGCTAATGACATCACGTCCCAGCTGGAGATTAACTTTGGAGATCTGGGCCGCCCGGGACGTGGTCGTGGAGGTCCACGAGGTGGCAGAGGTGGCCGTGGGGCGGCTGCTGCTACCAGACCACCTCGTGAACGCAGGCCAGACAAGgtCGGAGGAGTGTCTGTCCCTAACGTGGACGACCCAGAGGCTTTCCCAGCCCTGGCTTAAGCTGCACAGACAGCTCTTGGCTCACCCAGGAGGATCACTCCTCCATGGGTCCTTGTCTAAAAGGCTTGCATGCTAACGGATTCTTCAGCAGATGAAATGATGGAAGACTGTCATCCATGCCATTCACCCTTGAGGACTGAATTTTACctgttttagaaaaaaagaaggaaaattaaaaaaacaaaaacaaacaaaaaaaaaacaacggaCGGACTTCTTGCTGTTATGAAGCAAATTATTGGTCGAGGTTTTGTATTTAGACAAGGTAGCAGGGATGTTTTCATACAGTGTTTCTTttattgtttctttcttttgtttttcttttcagaaATGATGCATTGTTCATGGATACGTTTTGTACTGCTGCTTGAAAATATGCATTTCCAAAAATGGGTGTCAAGAGCGCACCAGTTTATCTTAAGGTGTCCCGTAGCTTGCTTGCTTTTTACACACAAATGCCTTGAAACAGGGGCCGCCCTTTTCAGGGATGTGATCTACCGGTTagtcttttaatttttaaaggttACTGCGTTTCTAAGGGAATTATAGAGCATTTTAGTTCTGGTATTAAACACCTCCCTTCCCTGAAAGCAAGGCTTTAGAACCGTAAAatcattttgattaaatgtacAATTTCTGATTCAGACCTTAAAGCTGGGATgtaattcaaatgatttttttattgaatgaCCACTGTAAGCTTCAAATGGTGTCTTTGATGCCATTGCCTCTGGTAACTCAGGATAGTATCGTACTTGTTACGCGAAGTTCTGGTGTAAATACAACAAGCAAGTTTACACACCGCACTCCTGTTTACTGATTAATGTAAGCCAGGTTATGGATAAATCCTGTTAGAAATGATGTTTTCTTTCTGCCCCATTGCTTTTACAACAGCTCTACTGCATACTTGATCTGAAAGAAACCCCTTCCTGTTCAGCGTGGAACAGCTGAGTGCTATTATAATGTGTGAATTCCTACCCTGCTATTAGACCTCTGTCAATAATTAAAAGATGGTCGATTCATA
>TCONS_00064060
GTGGCATCTAGCAGCGAAGTGCTCGCTCAAGCCCCGTAGAATCGGAGGAGAATCCTGCTGAAAGGGGGCCATCATGCCCGGACATCTGCAAGAAGGTTTCGGCTGTGTCGTAACCAATCGGTTCGACCAGCTATTTGATGACGAAGAGGATCCGTTCGAGGTGTTAAAGCAGGcagaaaagaagaagaaggacGCGACCGTCCCTGGTGCCGCAAAGACCGCCGCGCAGGCTGCTAAGCAGCCCAAAAAGGAGTCGCAGAAGGAGAGGAGAAACCCGCTTCCCGATAAAAAGGAAGAAACACAAGCCCCCGTTCCTCTCAAGAAAGATGGCATGAGGAAGATGGGCCGCCGGCCTGAGCAGCAGGGTCAACAAGGatcccagcagcagcagcagcaacagcaggtGCCTCAGCAGCAGGCAGGACAGGGGGAGGGTCGTCCACCAGCAGACAGGCGGCCTGACAGGAGGCCACCACGTGAACGACGCTTTGACAAACCCGCTGATGAAAAACCTGCTGAGGGTGGAGAATTCTCAGTTGAGAAGACTATGGGTGACAGGCCATTCCGGGGTCGTGGAGGTCCCCGAGGGGGGCGCGGAGGGCGAGGCAGAGGTGTTGGCAGGACTGACGGCTTTGACTCGCGCGGCAAACGAGAGTTTGACAGACACAGCGGCAGCGACCGATCCCTGAAAGCAGAGGAGAAACGTGGAGGCAGTGGATCTCATAACTGGGGCACTGTTAAGGATGAGTTGAGTGAGCTTGACCAATCAAACGTCACCGAGGACACCCCTGAAGGAGAAGAACACCCACCTGCTGACTCGGAGAACAAGGAGAATGAGGTTGAAGAAGCAAAAGAAGAAGGCCCTAAGGAGATGTCTCTGGATGAATGGAAGGCCCAGCAGGATAAAGAGAGAGCCAAAGTGGAATTCAACATTCGTAAGGCAAATGAGGGAGCTGACTGGAAGAAAGGATACGTTCTGCACAAGTCCAAGGCTGAGGATGCCTCTGCTGATGATGCTGCTGGTGACCATCACTTCCGCAAACCTGCTAATGACATCACGTCCCAGCTGGAGATTAACTTTGGAGATCTGGGCCGCCCGGGACGTGGTCGTGGAGGTCCACGAGGTGGCAGAGGTGGCCGTGGGGCGGCTGCTGCTACCAGACCACCTCGTGAACGCAGGCCAGACAAGgtCGGAGGAGTGTCTGTCCCTAACGTGGACGACCCAGAGGCTTTCCCAGCCCTGGCTTAAGCTGCACAGACAGCTCTTGGCTCACCCAGGAGGATCACTCCTCCATGGGTCCTTGTCTAAAAGGCTTGCATGCTAACGGATTCTTCAGCAGATGAAATGATGGAAGACTGTCATCCATGCCATTCACCCTTGAGGACTGAATTTTACctgttttagaaaaaaagaaggaaaattaaaaaaacaaaaacaaacaaaaaaaaaacaacggaCGGACTTCTTGCTGTTATGAAGCAAATTATTGGTCGAGGTTTTGTATTTAGACAAGGTAGCAGGGATGTTTTCATACAGTGTTTCTTttattgtttctttcttttgtttttcttttcagaaATGATGCATTGTTCATGGATACGTTTTGTACTGCTGCTTGAAAATATGCATTTCCAAAAATGGGTGTCAAGAGCGCACCAGTTTATCTTAAGGTGTCCCGTAGCTTGCTTGCTTTTTACACACAAATGCCTTGAAACAGGGGCCGCCCTTTTCAGGGATGTGATCTACCGGTTagtcttttaatttttaaaggttACTGCGTTTCTAAGGGAATTATAGAGCATTTTAGTTCTGGTATTAAACACCTCCCTTCCCTGAAAGCAAGGCTTTAGAACCGTAAAatcattttgattaaatgtacAATTTCTGATTCAGACCTTAAAGCTGGGATgtaattcaaatgatttttttattgaatgaCCACTGTAAGCTTCAAATGGTGTCTTTGATGCCATTGCCTCTGGTAACTCAGGATAGTATCGTACTTGTTACGCGAAGTTCTGGTGTAAATACAACAAGCAAGTTTACACACCGCACTCCTGTTTACTGATTAATGTAAGCCAGGTTATGGATAAATCCTGTTAGAAATGATGTTTTCTTTCTGCCCCATTGCTTTTACAACAGCTCTACTGCATACTTGATCTGAAAGAAACCCCTTCCTGTTCAGCGTGGAACAGCTGAGTGCTATTATAATGTGTGAATTCCTACCCTGCTATTAGACCTCTGTCAATAATTAAAAGATGGTCGATTC
>TCONS_00064061
TTTTCCAGCCATCTTGTGGCATCTAGCAGCGAAGTGCTCGCTCAAGCCCCGTAGAATCGGAGGAGAATCCTGCTGAAAGGGGGCCATCATGCCCGGACATCTGCAAGAAGGTTTCGGCTGTGTCGTAACCAATCGGTTCGACCAGCTATTTGATGACGAAGAGGATCCGTTCGAGGTGTTAAAGCAGATGAAATGATGGAAGACTGTCATCCATGCCATTCACCCTTGAGGACTGAATTTTACctgttttagaaaaaaagaaggaaaattaaaaaaacaaaaacaaacaaaaaaaaaacaacggaCGGACTTCTTGCTGTTATGAAGCAAATTATTGGTCGAGGTTTTGTATTTAGACAAGGTAGCAGGGATGTTTTCATACAGTGTTTCTTttattgtttctttcttttgtttttcttttcagaaATGATGCATTGTTCATGGATACGTTTTGTACTGCTGCTTGAAAATATGCATTTCCAAAAATGGGTGTCAAGAGCGCACCAGTTTATCTTAAGGTGTCCCGTAGCTTGCTTGCTTTTTACACACAAATGCCTTGAAACAGGGGCCGCCCTTTTCAGGGATGTGATCTACCGGTTagtcttttaatttttaaaggttACTGCGTTTCTAAGGGAATTATAGAGCATTTTAGTTCTGGTATTAAACACCTCCCTTCCCTGAAAGCAAGGCTTTAGAACCGTAAAatcattttgattaaatgtacAATTTCTGATTCAGACCTTAAAGCTGGGATgtaattcaaa
>TCONS_00064062
GAGAAGCGCAAGTCTTTTCCAGCCATCTTGTGGCATCTAGCAGCGAAGTGCTCGCTCAAGCCCCGTAGAATCGGAGGAGAATCCTGCTGAAAGGGGGCCATCATGCCCGGACATCTGCAAGAAGGTTTCGGCTGTGTCGTAACCAATCGGTTCGACCAGCTATTTGATGACGAAGAGGATCCGTTCGAGGTGTTAAAGCAGGcagaaaagaagaagaaggacGCGACCGTCCCTGGTGCCGCAAAGACCGCCGCGCAGGCTGCTAAGCAGCCCAAAAAGGAGTCGCAGAAGGAGAGGAGAAACCCGCTTCCCGATAAAAAGGAAGAAACACAAGCCCCCGTTCCTCTCAAGAAAGATGGCATGAGGAAGATGGGCCGCCGGCCTGAGCAGCAGGGTCAACAAGGatcccagcagcagcagcagcaacagcagAGCCAAAGTGGAATTCAACATTCGTAAGGCAAATGAGGGAGCTGACTGGAAGAAAGGATACGTTCTGCACAAGTCCAAGGCTGAGGATGCCTCTGCTGATGATGCTGCTGGTGACCATCACTTCCGCAAACCTGCTAATGACATCACGTCCCAGCTGGAGATTAACTTTGGAGATCTGGGCCGCCCGGGACGTGGTCGTGGAGGTCCACGAGGTGGCAGAGGTGGCCGTGGGGCGGCTGCTGCTACCAGACCACCTCGTGAACGCAGGCCAGACAAGgtCGGAGGAGTGTCTGTCCCTAACGTGGACGACCCAGAGGCTTTCCCAGCCCTGGCTT
>TCONS_00064063
TTTTCCAGCCATCTTGTGGCATCTAGCAGCGAAGTGCTCGCTCAAGCCCCGTAGAATCGGAGGAGAATCCTGCTGAAAGGGGGCCATCATGCCCGGACATCTGCAAGAAGGTTTCGGCTGTGTCGTAACCAATCGGTTCGACCAGCTATTTGATGACGAAGAGGATCCGTTCGAGGTGTTAAAGCAGGcagaaaagaagaagaaggacGCGACCGTCCCTGGTGCCGCAAAGACCGCCGCGCAGGCTGCTAAGCAGCCCAAAAAGGAGTCGCAGAAGGAGAGGAGAAACCCGCTTCCCGATAAAAAGGAAGAAACACAAGCCCCCGTTCCTCTCAAGAAAGATGGCATGAGGAAGATGGGCCGCCGGCCTGAGCAGCAGGGTCAACAAGGatcccagcagcagcagcagcaacagcagGCAGTGGATCTCATAACTGGGGCACTGTTAAGGATGAGTTGAGTGAGCTTGACCAATCAAACGTCACCGAGGACACCCCTGAAGGAGAAGAACACCCACCTGCTGACTCGGAGAACAAGGAGAATGAGGTTGAAGAAGCAAAAGAAGAAGGCCCTAAGGAGATGTCTCTGGATGAATGGAAGGCCCAGCAGGATAAAGAGAGAGCCAAAGTGGAATTCAACATTCGTAAGGCAAATGAGGGAGCTGACTGGAAGAAAGGATACGTTCTGCACAAGTCCAAGGCTGAGGATGCCTCTGCTGATGATGCTGCTGGTGACCATCACTTCCGCAAACCTGCTAATGACATCACGTCCCAGCTGGAGATTAACTTTG
>TCONS_00064064
GCCATCTTGTGGCATCTAGCAGCGAAGTGCTCGCTCAAGCCCCGTAGAATCGGAGGAGAATCCTGCTGAAAGGGGGCCATCATGCCCGGACATCTGCAAGAAGGTTTCGGCTGTGTCGTAACCAATCGGTTCGACCAGCTATTTGATGACGAAGAGGATCCGTTCGAGGTGTTAAAGCAGGcagaaaagaagaagaaggacGCGACCGTCCCTGGTGCCGCAAAGACCGCCGCGCAGGCTGCTAAGCAGCCCAAAAAGGAGTCGCAGAAGGAGAGGAGAAACCCGCTTCCCGATAAAAAGGAAGAAACACAAGCCCCCGTTCCTCTCAAGAAAGATGGCATGAGGAAGATGGGCCGCCGGCCTGAGCAGCAGGGTCAACAAGGatcccagcagcagcagcagcaacagcagAGGAGAAACGTGGAGGCAGTGGATCTCATAACTGGGGCACTGTTAAGGATGAGTTGAGTGAGCTTGACCAATCAAACGTCACCGAGGACACCCCTGAAGGAGAAGAACACCCACCTGCTGACTCGGAGAACAAGGAGAATGAGGTTGAAGAAGCAAAAGAAGAAGGCCCTAAGGAGATGTCTCTGGATGAATGGAAGGCCCAGCAGGATAAAGAGAGAGCCAAAGTGGAATTCAACATTCGTAAGGCAAATGAGGGAGCTGACTGGAAGAAAGGATACGTTCTGCACAAG

Function

symbol description
serbp1a Predicted to enable mRNA 3'-UTR binding activity. Predicted to be active in cytoplasm and nucleus. Orthologous to human SERBP1 (SERPINE1 mRNA binding protein 1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003723 RNA binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7389 Predicted to enable mRNA 3'-UTR binding activity. Predicted to be active in cytoplasm and nucleus. Orthologous to human SERBP1 (SERPINE1 mRNA binding protein 1).

Ensembl:

ensembl_id ENSDARG00000074242

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064059 False 2344 mRNA 0.49 8 34931597 34938746
TCONS_00064060 False 2270 mRNA 0.49 8 34931600 34938678
TCONS_00064061 False 767 processed_transcript 0.40 2 34931950 34938693
TCONS_00064062 False 767 processed_transcript 0.57 5 34932623 34938707
TCONS_00064063 False 790 processed_transcript 0.53 6 34932956 34938693
TCONS_00064064 True 701 processed_transcript 0.53 5 34933586 34938686

Neighbor

gene id symbol gene type direction distance location
XLOC_032968 slc35d1a coding downstream 71007 34847276 ~ 34860590 (-)
XLOC_032967 mier1a coding downstream 93184 34823721 ~ 34838413 (-)
XLOC_032966 NA coding downstream 113408 34817183 ~ 34818189 (-)
XLOC_032965 NA coding downstream 279458 34649795 ~ 34652139 (-)
XLOC_032964 CR385041.1 coding downstream 287227 34644253 ~ 34644370 (-)
XLOC_032970 hsd17b7 coding upstream 4605 34943351 ~ 34958274 (-)
XLOC_032971 ddr2a coding upstream 21279 34960025 ~ 35032792 (-)
XLOC_032972 uap1 coding upstream 94711 35033457 ~ 35052388 (-)
XLOC_032973 NA coding upstream 146286 35085032 ~ 35090195 (-)
XLOC_032974 nos1apa coding upstream 161151 35099897 ~ 35310224 (-)
XLOC_032962 NA non-coding downstream 753699 34158617 ~ 34177898 (-)
XLOC_032955 CR855206.1 non-coding downstream 1205449 33726047 ~ 33726148 (-)
XLOC_032979 NA non-coding upstream 810320 35749066 ~ 35749921 (-)
XLOC_032980 CU137680.2 non-coding upstream 971752 35910498 ~ 35914713 (-)
XLOC_032981 NA non-coding upstream 1182573 36121319 ~ 36124890 (-)
XLOC_032983 BX936433.2 non-coding upstream 1348792 36287538 ~ 36290625 (-)

Expression


Co-expression Network