G1398549


Basic Information

Item Value
gene id G1398549
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 62629015 ~ 62633212 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1597173
ggATAGGACTaaaggagggagtagtagaggtggATAGGACTaaaggagggagtagtagaggtggATAGAACTGAAGGAGGGAGTAGttgaggtggtagaggtggatagGACTGaaggagggagtagtagaggtggATAGGACTGAAGGAGGGGGTTGTAGAGATGGATAGGTCTGAAGGATGGAGTAGgtaaggtggtagaggtggatagGACTGaaagagggagtagtagaggtggataggtctgaaggagggagtagtagaggtggtAACGTGGaaggagggagtagtagaggtggATAGGACTGAAGGAGGGGGTTGTAGAGATGGATAGGTCTGAAGGATGGAGTAGgtaaggtggtagaggtggatagGACTGaaagagggagtagtagaggtggataggtctgaaggagggagtagtagaggtggtAACGTGGAAGGAGGGAGTAGTACAGGTGGATAGGTCTGAAGGAGAGagtagtagaggtggtagaggtttATAGGTCTGaaggagggagtagtagaggtggtagaggtggattGGACTGaatgagggagtagtagaggtggATAGGACTGAATGAGGGAGTAATAGAGGTGGATAGGACTGAAGGAGGAagtagtagaggtggtagaggtggatagTACTGaatgagggagtagtagaggtagATAGGACTGaaggagggagtagtagagggggataggactgaatgagggagtagtagagtTGTATAGTACTGAAGGAGGTAGTAGTAGACGTGGATAGGTCTGaatgagggagtagtagaggtggtagaggtggatagGTCTGAAGGAGGGAGTTGTAGAAGTGGATAGGTCTGATTGAGGGAGATAGTAGAGGTGGATAGGATTGAAGGAGGGAATAGTAGAGGTGGATAGGACTGaaggagggagtagtagaggtgaTAGAGGTGGATAGGTCTGAAGGAGGGGGCAGTAAAGGTGGATAGGACTGAAGGAGGGAGTTCTAGAGGTAGATAGGACTGaatgagggagtagtagagggtgataggtctgaaggagggagtagtagaggtggtagaggtggatagGTCTGAAGGAGGGAATAGTAGAGGTGGTAGAGATGGATAGGACTGaatgagggagtagtagagaTGGATAGGACTGCATGAGGGAATAGTAGAGGTGGATAGGACTTAAgaagggagtagtagaggtggtACAGGTGGATAGGACTGAAGGCGGGACTGGTAGGGGTGGTAGAGATGGATAGGACTGAAGGAGGTAGTAATAGACATAGATAGGACTGaatgagggagtagtagaggtggATAGGACTTAAGGAGGGAGTAGTAGGGGTGGTAGAGGTGGATAGGTCTGAgggagggagtagtagaggtggtTGAGATGGATAGGACTGaatgagggagtagtagaggtggATAGGACTGAAGAAGGGAGTAGTAGATGTGGTACAGGTGGATAGGACTGaatgagggagtagtagaggtggataggactgaatgagggagtagtagaggttgATTGCTCTGAAGGAGGGAGAAGTAGATTGTGGATAGGACTGAAGGAGGAAGTAGTGGAGATGGATAGGTCTGAAGGAGGGAGTAGTGGAGGTGGATAGGACTGaatgagggagtagtagaggttgATTGCTCTGAAGGAGGGAGAAGTAGATTGTGGATAGGACTGAAGGATGGAGttgtagaggtggtagaggtggatagGACTGAAGGAGAGATTAGTAGAGGTGGATAGGACTGaaggagggagtagtagaggtggATAGGACTTAAGGAGGGAGTAGTGGGGGTGGTAGAGGTGGATAGGTCTGAgggagggagtagtagaggtggtATAGGTGGATAGGACTGAATGAGAGTGTAGTAGAGGTGGATAGGACTTAAGGAGGGAGTAGTAGGGGTGGTAGAGGTGGATAGGTCTGAAGTGGGGAGTAGTGGAGgtggATAGCTCTGaaggagggagtagtagaggtggtagaggtggataaGACTGAAGGAGGGAGTTGTAGAGGTGAATAGGACTGaatgagggagtagtagaggtggATAGGTCTGAAGGAGGGAGTAGTGGAGGTGGATAGGACTGaatgagggagtagtagaggtggATAGCTCTGAAGGAGGGTGTTGTAGAGGTGGATAGCTCTGaaagagggagtagtagaggtggCAGAGGTGGATAGGACTGaatgagggagtagtagaggtggATAGGACTGaaggagggagtagtagaggtggataggactgaatgagggagtagtagaggtggATAGGACTGaaggagggagtagtagaggtggATAGGACTGAATAAGGGAGTAGTAGAGATGGATAGGACTGAAGGAGGGAGTAATAGAGgtggATAGGACTGAAGGAGGGAGTAATAGACGTAGATAGGACTGaatgagggagtagtagaggtggATAGCTCTGAAGGAGGGAGTattagaggtggtagaggtggataaGACTGAAGGagtagtagaggtggtagaggtggataggactgaatgagggagtagtagaggtggATTAGACTGAATGAGGGAGTACTTGAGGTGGATAGGCCTGATCAAGGGAGTAATAGACGTAGATAGGACTGaatgagggagtagtagaggtggATAGCTCTGAAGGAGGGAGTattagaggtggtagaggtggataaGACTGAAGGagtagtagaggtggtagaggtggataggactgaatgagggagtagtagagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1597173 True 2759 lncRNA 0.49 6 62629015 62633212

Neighbor

gene id symbol gene type direction distance location
LOC110492495 znf512b coding downstream 169531 62387428 ~ 62459484 (-)
uckl1b uckl1 coding downstream 242035 62328788 ~ 62386980 (-)
LOC118939568 NA coding downstream 281906 62342366 ~ 62347109 (-)
LOC110529871 zbtb46 coding downstream 317807 62181229 ~ 62311208 (-)
LOC110492510 LOC106566591 coding downstream 685194 61814544 ~ 61943821 (-)
b4galt5 LOC106566571 coding upstream 326753 62959965 ~ 63008499 (-)
LOC110492520 LOC106566548 coding upstream 791699 63424911 ~ 63429527 (-)
LOC110492523 dhx35 coding upstream 1431038 64064250 ~ 64081609 (-)
LOC118939600 NA coding upstream 1432974 64066186 ~ 64066289 (-)
rab5if cssa13h20orf24 coding upstream 1454972 64088184 ~ 64092123 (-)
G1398520 NA non-coding downstream 127462 62500230 ~ 62501553 (-)
G1398487 NA non-coding downstream 160842 62465253 ~ 62468173 (-)
G1398473 NA non-coding downstream 193851 62434144 ~ 62435164 (-)
G1398462 NA non-coding downstream 232960 62394625 ~ 62396055 (-)
G1398443 NA non-coding downstream 291943 62335940 ~ 62337072 (-)
G1398556 NA non-coding upstream 8051 62641263 ~ 62641829 (-)
G1398588 prpf6 non-coding upstream 65490 62698702 ~ 62699356 (-)
G1398587 prpf6 non-coding upstream 70740 62703952 ~ 62706377 (-)
G1398611 NA non-coding upstream 95876 62729088 ~ 62729336 (-)
G1398617 NA non-coding upstream 100636 62733848 ~ 62734113 (-)
abhd6b LOC106566659 other downstream 1874144 60753006 ~ 60758788 (-)
G1396543 NA other downstream 1934979 60693609 ~ 60694036 (-)
LOC118939463 NA other downstream 1965499 60661556 ~ 60672085 (-)
G1396467 NA other downstream 2046980 60554756 ~ 60582035 (-)
G1394978 LOC106566621 other downstream 3272166 59354200 ~ 59356849 (-)
G1398619 NA other upstream 101531 62734743 ~ 62735569 (-)
G1399235 NA other upstream 565907 63199119 ~ 63292201 (-)
G1399367 NA other upstream 751637 63384849 ~ 63385262 (-)
G1400503 zhx3 other upstream 1470158 64103370 ~ 64105039 (-)
G1400552 NA other upstream 1623714 64256926 ~ 64257433 (-)

Expression


Co-expression Network