XLOC_032977 (rgs8)


Basic Information

Item Value
gene id XLOC_032977
gene name rgs8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 35459369 ~ 35488180 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064082
caagctaattttttacatatttagtaCCATAATTTATTACAAAGCGTTATTTCAGGATACGTTTAGCTGAACCTTTCGTTTTAACAAAAGTTTGGTGTCCTTGATATGGCCTGCTAGATCCTGATCTCAATTTTCTTTCAAGTGTCATTGAAAAAAGCAAGGCAGCTGCTTCCTAAACACTGGCTCGAATATAGCAGGCCTCTCTCATCACCACTTAACACCATTCACATCCTTCAGTATAAACCCCCCCTGTAAAGCCTTTGCAAAATTCACATGCAGCTCTATGGGTTCCTAAGAAGATAACACAGTGTTTTGAGGACATAATATGTCTTCAGTGAAGAGCTGAGAAGGCTAAATCTCCAAGCAGTCCGTACTCAGATAAGAGCTATCAAATGAGGCCAGCATGTCTCCATTTTAAACCCAGCACGGATTTGCCACTACGAGTGTGTCGGATGAAAAGACGCCTTTGATGTTTCATTCAGTCTCCTTGTTCCTCTCCTCAAAGAAACCCATTACCTCGACCCAAAACCTGCATACTAGACCTCAAATGACAGACATCCATACAGAATAACAGTTTGGCAGCATGAGAcctcaacaacaaaaacatgccacaaaaaaaaaaacaagaaaaaagccTCGACGGAGTAAAACAAAATGGCACAGTAATGCTCTTTGAATCTCCAGAGAGACCAGTGTGTTGACAAAGCCTCTCCCTCTGCCTATTTTTCTCATCTCGCTCTCTCTCGCGCACGCTCTCTCTCTCCGTTCCTCACGCTTTCACACTGATGAACACGCTGTGTGATGATTGCTACATGTGGGCAACAGTAGATATCTCTACACAAGAACAGAGCGGTCGGATAAAGCAGCTTCTCCAGCCTCAATCAAAGAGCTGTCATCTGCAACGGCAGTGAGCTATAAAGGGCCATGAAAACTAGACTAGGGTGCCTGTCTAACAAGTCAGACTCATGCAGCGATTTTTCCGAATTCCTGCCTCCAGCTCAGGAGAGAACCACAAGATACCTGAAATTGTCCAATGATGAAGTGACCAGATGGGCAGACTCTTTCGATATTCTCCTGTCCAATAAATATGGTCTGGCTGCCTTCAGAACCTTCCTGAAAACAGAGTTCAGTGATGAAAACATTGAGTTCTGGTTGGCCTGTGAGGACTATAAAAAGATCAAATCCCCTGCTAAGATGATGTCCAAGGCCAATAAGATCTACAAGGAATTTATTGACGTTCATGCACCCAGAGAGGTCAACATAGACCACAGGACCAGAGAGGAAACCAAAAACAGGCTTCTAGAACCGACTCCACACAGTCTCAACGAAGTGCAAGCTAAAGTGTACAGCCTGATGGAGAAGGACTCGTATCCTCGGTTTATAAGATCAAAGATCTATCAGGACTTACTGAACAGGACACAGATTTACTGTCAGAGGAAGTCTGTTTAAAGGTGAACGTCTGTTTGCTCGCCTGGCTAGATGATATTGAGATAATAAAGCAGACTTTAATTGTTATATATAGCATAGTCTGTGTGTTTGCACAATAATTAGATgagaataatcaaataaaaaaggtCAAAAATGAACTAGTTCCTTTGCTAGTttgcatttaaagtaaaatatgacCCTGTACTGTGCTTTTTTGCCCAGTTTGTAACATGCGGCTCTATTCTCTCCCTTTTGATTGTGATAGAATGCttaatgttttctctgaatgcTGGCAAGCATGTAAATCTACATGGGTTATGTGTAAGAGTAGGGTACAAGAATTTATTTTTCTGATCTTCAATGTCACTTACAGTCTGTTCCGATAAGACAACTGAAGACATGCCTGCTGTTTTGCATGTAGCCTCCAACGTATATATTTAGATTACTCTATTTCCCTTACAATCTAAATCTAAAACAGGTTGATCACAAACATTTGCGCACAACAGATTGTTTTCTCAACtaaaatatatacttaaaaaGTATTTGACAATgtaatatttatgtttgtttattaattaatttagttatttttttcacATGTTGATGTTCTAATGGTTTACAATGACATGTTCTCCAGTGATATAGATCAAGTAAAGCATGTCACTTTAATCATGGTGTTATGTTTTTTTCCCCATGCCTGTGAATAAACAGAATATGCTGCACGTTTTGAATGTTTATCAAGGTTTGTGAGTTCTCTGTGTGAAAAATATTGATAGCAAAATGTGCAACCACAAGTAAACACAAGTACAGCATGTTCAAAGTTTCAGCCATCAGTGACAGTGGTTGAAAGTAAGTGCATTACTcatcttaaagtgatagttcaccacTCACCTTTGGGCCATCTGAAATGTAGCTTACTTTTTCCTTGAGCATAAGCGCATTTTTGTGTTTATCTTGGACAATTCAACCTTTATCAATAACATGTAAACAAATAGTATAATCTCGGACAAGTGTAAGTCCACAAAAGAATGTCACTATGCAATGAAAACATGGTTTAGACTGTCTTAAATTCACCCACATACAGTAAATTAAGTGTGTaattgttgtaaataatgttcggTTACTTGCACAGACtgatctttttttattcataGGACATCAATGTACTGTATTATcagaagtcaatattattatgcttgtatgtttttgttttttttacacaatgtGCTGGTCGCTTTTGAATAGCATGATGACAAAAATATTCTTTAATGTTCCATAAAAAAGGTATTCAAGTATTAGTTGGCTGTTAGGTTAAAAAGATAGttaacccaaaactgaaaatgtactcaccctcacGTGGTTCCATGTATAAACTCTCAGAAAttaaggtacgtgagctgtcactgggctgTTACCTTTtctaaaggtacaaatttgtacctaaaaggtccatattaataccttaagaGAACATGTTAATACCTTAAAAAAGTACagaagtgttcctcttaaatctttaggtaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataatataatataatatttttgctcttcagtgtttgaactctcagtaatgattaaatcacactgaactgagctaaactgaactgaactgaacttaaacactaaaaattgaaccacactgttccagttactatgaccatttatgtgaagctgctttgacacaatctacattgtaaaagggctatacaaataaagctgaattgaattgaattgaatataatttTGAGGTACCAAAATGGACCTTTTAAGTAcgaatgtgtaccttttgaaaaggtaccaccccagtgacagttcgcatacctttatttctgagagtgtaggattATAAATAAGCTATttggaagaaaagaaaaaaaaaaagttagaaacctgtaaccacctCTGACTTACAGAGAAagagaaacaaatactatgaaagtcaatgattagAGATTtccaaaaacttatttttttaaataactcattttgtctttaatagaaaaaagaaactcaaataggttagTGGctagtgaagggtgagtaaatgatgacagaaatgtgaGTGAACTGTCCTATTAGGTTAAGAATAAGCTGACAAGCACTGTTCTTGCAAGTAGTTTTGTAACCAGAAAtcggatttacaaaataaatcttAAGAAATAGGTTAAGAAATCGTTTAGTTAAGATGCATTCTGAGTGCAATTACAATTTTTaagcttaatttttaaaaacccattttttttaaaaatctcaaatttcttcctaataacatctttttttcttccttatgaataaaaatttaacaaaaatgtataaatttaaatgtagttataaaaaaattaattaccaaTACATTTTAATTGTATCACTTTATTCTCATTCTCCAATTGACAAAAGAGACTGTATTTATTGActctttattagtacttataaagtatgaccctattctacatccctaataagcagttattttttttagctaaacAAAGTGTGATTATAAGTGGGATTTATAATGTTGTaccttttaataaaaataaataaataaaaatttacaaatcTTTCAAACAGTCTAATTACAGCTATTTGACATTtcaaagttcattcattttcttttcggcttagttcctttattaatcagaggttgccacagcagaatgaactgccaacttatccagcatatgttttacatgttCTATATGTtttaccaattcacctataccacatgtctttggactgtgggggaaaccgcagctgaaggaaacccaggcaaacatggggagaacatgcaaactccacacataaatgctaactgacccagccaaggcttgaaccggcgaccttgctgtgaggtgacagcgctacatTATAAAAGTTGCTTAAAGTAAATGGCTGAAGCAGACCATTGGAATAAAGTGTCCTAAGTTATG
>TCONS_00064083
CCTCACGCTTTCACACTGATGAACACGCTGTGTGATGATTGCTACATGTGGGCAACAGTAGATATCTCTACACAAGAACAGAGCGGTCGGATAAAGCAGCTTCTCCAGCCTCAATCAAAGAGCTGTCATCTGCAACGGCAGTGAGCTATAAAGGCAAATCAACTCGCCACTTGCTCCTGCAGTTACAGTCAACTGGAAGAGATTGCATTGCAAGGACGTTCAGGCCATGAAAACTAGACTAGGGTGCCTGTCTAACAAGTCAGACTCATGCAGCGATTTTTCCGAATTCCTGCCTCCAGCTCAGGAGAGAACCACAAGATACCTGAAATTGTCCAATGATGAAGTGACCAGATGGGCAGACTCTTTCGATATTCTCCTGTCCAATAAATATGGTCTGGCTGCCTTCAGAACCTTCCTGAAAACAGAGTTCAGTGATGAAAACATTGAGTTCTGGTTGGCCTGTGAGGACTATAAAAAGATCAAATCCCCTGCTAAGATGATGTCCAAGGCCAATAAGATCTACAAGGAATTTATTGACGTTCATGCACCCAGAGAGGTCAACATAGACCACAGGACCAGAGAGGAAACCAAAAACAGGCTTCTAGAACCGACTCCACACAGTCTCAACGAAGTGCAAGCTAAAGTGTACAGCCTGATGGAGAAGGACTCGTATCCTCGGTTTATAAGATCAAAGATCTATCAGGACTTACTGAACAGGACACAGATTTACTGTCAGAGGAAGTCTGTTTAAAGGTGAACGTCTGTTTGCTCGCCTGGCTAGATGATATTGAGATAATAAAGCAGACTTTAATTGTTATATATAGCATAGTCTGTGTGTTTGCACAATAATTAGATgagaataatcaaataaaaaaggtCAAAAATGAACTAGTTCCTTTGCTAGTttgcatttaaagtaaaatatgacCCTGTACTGTGCTTTTTTGCCCAGTTTGTAACATGCGGCTCTATTCTCTCCCTTTTGATTGTGATAGAATGCttaatgttttctctgaatgcTGGCAAGCATGTAAATCTACATGGGTTATGTGTAAGAGTAGGGTACAAGAATTTATTTTTCTGATCTTCAATGTCACTTACAGTCTGTTCCGATAAGACAACTGAAGACATGCCTGCTGTTTTGCATGTAGCCTCCAACGTATATATTTAGATTACTCTATTTCCCTTACAATCTAAATCTAAAACAGGTTGATCACAAACATTTGCGCACAACAGATTGTTTTCTCAACtaaaatatatacttaaaaaGTATTTGACAATgtaatatttatgtttgtttattaattaatttagttatttttttcacATGTTGATGTTCTAATGGTTTACAATGACATGTTCTCCAGTGATATAGATCAAGTAAAGCATGTCACTTTAATCATGGTGTTATGTTTTTTTCCCCATGCCTGTGAATAAACAGAATATGCTGCACGTTTTGAATGTTTA
>TCONS_00064084
TTCAGGGCCATGAAAACTAGACTAGGGTGCCTGTCTAACAAGTCAGACTCATGCAGCGATTTTTCCGAATTCCTGCCTCCAGCTCAGGAGAGAACCACAAGATACCTGAAATTGTCCAATGATGAAGTGACCAGATGGGCAGACTCTTTCGATATTCTCCTGTCCAATAAATATGGTCTGGCTGCCTTCAGAACCTTCCTGAAAACAGAGTTCAGTGATGAAAACATTGAGTTCTGGTTGGCCTGTGAGGACTATAAAAAGATCAAATCCCCTGCTAAGATGATGTCCAAGGCCAATAAGATCTACAAGGAATTTATTGACGTTCATGCACCCAGAGAGGTCAACATAGACCACAGGACCAGAGAGGAAACCAAAAACAGGCTTCTAGAACCGACTCCACACAGTCTCAACGAAGTGCAAGCTAAAGTGTACAGCCTGATGGAGAAGGACTCGTATCCTCGGTTTATAAGATCAAAGATCTATCAGGACTTACTGAACAGGACACAGATTTACTGTCAGAGGAAGTCTGTTTAA

Function

symbol description
rgs8 Predicted to enable GTPase activator activity. Predicted to be involved in G protein-coupled acetylcholine receptor signaling pathway; positive regulation of GTPase activity; and regulation of dopamine receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and negative regulation of signal transduction. Predicted to be located in dendrite; neuronal cell body membrane; and nucleus. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Is expressed in forebrain and retina. Orthologous to human RGS8 (regulator of G protein signaling 8).

GO:

id name namespace
GO:0007213 G protein-coupled acetylcholine receptor signaling pathway biological_process
GO:0060159 regulation of dopamine receptor signaling pathway biological_process
GO:0009968 negative regulation of signal transduction biological_process
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0030425 dendrite cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0043204 perikaryon cellular_component
GO:0016020 membrane cellular_component
GO:0032809 neuronal cell body membrane cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-264 Predicted to enable GTPase activator activity. Predicted to be involved in G protein-coupled acetylcholine receptor signaling pathway; positive regulation of GTPase activity; and regulation of dopamine receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and negative regulation of signal transduction. Predicted to be located in dendrite; neuronal cell body membrane; and nucleus. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Is expressed in forebrain and retina. Orthologous to human RGS8 (regulator of G protein signaling 8).

Ensembl:

ensembl_id ENSDARG00000070037

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064082 False 4427 mRNA 0.35 5 35459369 35488180
TCONS_00064083 False 1467 mRNA 0.39 6 35461631 35487413
TCONS_00064084 True 534 mRNA 0.44 4 35462347 35472923
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Neighbor

gene id symbol gene type direction distance location
XLOC_032976 rgs16 coding downstream 13259 35443430 ~ 35446110 (-)
XLOC_032975 rgs5a coding downstream 19963 35387367 ~ 35439406 (-)
XLOC_032974 nos1apa coding downstream 149145 35099897 ~ 35310224 (-)
XLOC_032973 NA coding downstream 369174 35085032 ~ 35090195 (-)
XLOC_032972 uap1 coding downstream 406981 35033457 ~ 35052388 (-)
XLOC_032978 brinp3a.1 coding upstream 187604 35675784 ~ 35779348 (-)
XLOC_032979 NA coding upstream 260886 35749066 ~ 35749921 (-)
XLOC_032980 CU137680.2 coding upstream 422318 35910498 ~ 35914713 (-)
XLOC_032981 NA coding upstream 633139 36121319 ~ 36124890 (-)
XLOC_032982 brinp3a.2 coding upstream 639325 36127505 ~ 36198052 (-)
XLOC_032966 NA non-coding downstream 641180 34817183 ~ 34818189 (-)
XLOC_032965 NA non-coding downstream 807230 34649795 ~ 34652139 (-)
XLOC_032964 CR385041.1 non-coding downstream 814999 34644253 ~ 34644370 (-)
XLOC_032962 NA non-coding downstream 1281471 34158617 ~ 34177898 (-)
XLOC_032983 BX936433.2 non-coding upstream 799358 36287538 ~ 36290625 (-)
XLOC_032984 NA non-coding upstream 898112 36386292 ~ 36393495 (-)

Expression

Expression of XLOC_032977(rgs8) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
End of interactive chart.

Expression of XLOC_032977(rgs8) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G719151 NA unknown NC_048572.1 CM023226.2 50936928 ~ 50939471 (-)