XLOC_032980 (CU137680.2)


Basic Information

Item Value
gene id XLOC_032980
gene name CU137680.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 35910498 ~ 35914713 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064088
ATGGCCGACTTGTTGCTCCGCCTCACGCTGACCTGTGCTCGCCTTATGGCTGAACTGTTGCTCCGAGTCCGCCTGACGAGCcacctgtttctccggacctgtttctccgcctaacggcgacctgtttctccggacctgtttctccggacctgtttctccgcctaacggcgacctgtttctccggacctgtttctccgcctaacgcCCGAGCTGTTGCTCCGCCTAACGCCTGACCTGTGCTCCCCTCACGCCCAGCCTGTTGATCGGTGGACGGGTAAGCGCGCATGGCATCGGAAGGAGCTCGAAAAGTATAAGgtgatgacagtaagtaacgttactgtgatttgtgatctttctggggtgttaactgtaaagcaatggataattgcgtgaaaatcaaactaaaagaatgcaatcttgaggagttaatccccacatttgaagcacagGAGCGAACCTTTCCTCGTTTTTAGGTCAATTTGAATACAATTCAGAGGggtggcatgggggcgcagtgggtagtgctgtcgcctcacagcaagatggtcgctggtttgagccttggatgggtttcccctccacagtccaatgacatgcggtgtagctgaattggattgggaCCAATATTGCTGAGTATCTTCATCCATTGAATTCAAGAATCTATTGAGTTTCCTTATGTTCTCATCCTTGGAGACCACCACTTCTTTCAAGCCTTTGCTCACGTGCTGTGCTATTTATTATTGCAAAGTACATTACTTGCCAAAGTGGACGTTTGCTATAAAGCATTCTACATCTTTGGTGTGAACTACCCCAAGCAGTGTTCCCTGGTGTGGCAGACTGTGGCTTATGGACATCCTGGGGAGGAGACACAAGCAGTAAGGGTTCTGCTAGCATTAATTTTGCTGACAAACAGTAATCATTAATACTGTGACCTCACTGCTTCCTTGGATTCTGTGTTCTTTAACTTgtactttggattgtgggggaaaaggagcacccagagaaaacccacacgaacacggggaaaacatgcaaactccacacagaaacaccaactgaccctgctgaggcttaaaccaccgaccttgttgctgtgaggcaatcgtactacccactgtgccaccatgacacccatttctaaagaatagttttaataactcatttctaataactgatttcttttctctttgctatgatgacggcacataataatggactagatattttttaagacactctacactgcagttacattgcaactaatgtttcttacagactcttttatatctcaggattgatgtttgcacatgattgttcgagtaaaagttaaaaaaagttttcctatttcaaatttgttttaaaatgcttccatcctcaggtttcattttaacttttatatctgttttttcttcaaaactgcatttacattgaacttGATCATCCTTACTGATGATTGCTTTATAGCTCATATATTGATGTTGGCACATaattgttaaagggaaagttataaaatgttttcttattttttcttaatataaaatttgtattttcttagtttttattgtttgttttgttttttcaagctgtttgatgccttttcattattactttcacatatttttttctgcattgcagttgatgatttatatgagaatatgttgatgtttgtgctcaaattactttctgacttcagtcatttagatgcattttcattattacttccttatactattgtttttctctactctgcaataacattgcaattgcctcttactgatgattcctgatttataaatgtttttgaatgtatttcaaatatgcattttcttaaggtaatttgtctgatttcagtctgatgcattgttactgaactttagtcagtgtttctgtgatacagtttgataaattttcacagaaatcgtcttaaccctttaa
>TCONS_00064087
ATGGCCGACTTGTTGCTCCGCCTCACGCTGACCTGTGCTCGCCTTATGGCTGAACTGTTGCTCCGAGTCCGCCTGACGAGCcacctgtttctccggacctgtttctccgcctaacggcgacctgtttctccggacctgtttctccggacctgtttctccgcctaacggcgacctgtttctccggacctgtttctccgcctaacgcCCGAGCTGTTGCTCCGCCTAACGCCTGACCTGTGCTCCCCTCACGCCCAGCCTGTTGATCGGTGGACGGGTAAGCGCGCATGGCATCGGAAGGAGCTCGAAAAGTATAAGatggataattgcgtgaaaatcaaactaaaagaatgcaatcttgaggagttaatccccacatttgaagcacagGAGCGAACCTTTCCTCGTTTTTAGGTCAATTTGAATACAATTCAGAGGggtggcatgggggcgcagtgggtagtgctgtcgcctcacagcaagatggtcgctggtttgagccttggatgggtttcccctccacagtccaatgacatgcggtgtagctgaattggattgggaCCAATATTGCTGAGTATCTTCATCCATTGAATTCAAGAATCTATTGAGTTTCCTTATGTTCTCATCCTTGGAGACCACCACTTCTTTCAAGCCTTTGCTCACGTGCTGTGCTATTTATTATTGCAAAGTACATTACTTGCCAAAGTGGACGTTTGCTATAAAGCATTCTACATCTTTGGTGTGAACTACCCCAAGCAGTGTTCCCTGGTGTGGCAGACTGTGGCTTATGGACATCCTGGGGAGGAGACACAAGCAGTAAGGGTTCTGCTAGCATTAATTTTGCTGACAAACAGTAATCATTAATACTGTGACCTCACTGCTTCCTTGGATTCTGTGTTCTTTAACTTgtactttggattgtgggggaaaaggagcacccagagaaaacccacacgaacacggggaaaacatgcaaactccacacagaaacaccaactgaccctgctgaggcttaaaccaccgaccttgttgctgtgaggcaatcgtactacccactgtgccaccatgacacccatttctaaagaatagttttaataactcatttctaataactgatttcttttctctttgctatgatgacggcacataataatggactagatattttttaagacactctacactgcagttacattgcaactaatgtttcttacagactcttttatatctcaggattgatgtttgcacatgattgttcgagtaaaagttaaaaaaagttttcctatttcaaatttgttttaaaatgcttccatcctcaggtttcattttaacttttatatctgttttttcttcaaaactgcatttacattgaacttGATCATCCTTACTGATGATTGCTTTATAGCTCATATATTGATGTTGGCACATaattgttaaagggaaagttataaaatgttttcttattttttcttaatataaaatttgtattttcttagtttttattgtttgttttgttttttcaagctgtttgatgccttttcattattactttcacatatttttttctgcattgcagttgatgatttatatgagaatatgttgatgtttgtgctcaaattactttctgacttcagtcatttagatgcattttcattattacttccttatactattgtttttctctactctgcaataacattgcaattgcctcttactgatgattcctgatttataaatgtttttgaatgtatttcaaatatgcattttcttaaggtaatttgtctgatttcagtctgatgcattgttactgaactttagtcagtgtttctgtgatacagtttgataaattttcacagaaatcgtcttaaccctttaa
>TCONS_00064090
cCTGATGGCCGACTTGTTGCTCCGCCTCACGCTGACCTGTGCTCGCCTTATGGCTGAACTGTTGCTCCGAGTCCGCCTGACGAGCcacctgtttctccggacctgtttctccgcctaacggcgacctgtttctccggacctgtttctccggacctgtttctccgcctaacggcgacctgtttctccggacctgtttctccgcctaacgcCCGAGCTGTTGCTCCGCCTAACGCCTGACCTGTGCTCCCCTCACGCCCAGCCTGTTGATCGGTGGACGGGTAAGCGCGCATGGCATCGGAAGGAGCTCGAAAAGTATAAGgtgatgacagtaagtaacgttactgtgatttgtgatctttctggggtgttaactgtaaagcaatggataattgcgtgaaaatcaaactaaaagaatgcaatcttgaggagttaatccccacatttgaagGAGCGAACCTTTCCTCGTTTTTAGGTCAATTTGAATACAATTCAGAGGggtggcatgggggcgcagtgggtagtgctgtcgcctcacagcaagatggtcgctggtttgagccttggatgggtttcccctccacagtccaatgacatgcggtgtagctgaattggattgggaCCAATATTGCTGAGTATCTTCATCCATTGAATTCAAGAATCTATTGAGTTTCCTTATGTTCTCATCCTTGGAGACCACCACTTCTTTCAAGCCTTTGCTCACGTGCTGTGCTATTTATTATTGCAAAGTACATTACTTGCCAAAGTGGACGTTTGCTATAAAGCATTCTACATCTTTGGTGTGAACTACCCCAAGCAGTGTTCCCTGGTGTGGCAGACTGTGGCTTATGGACATCCTGGGGAGGAGACACAAGCAGTAAGGGTTCTGCTAGCATTAATTTTGCTGACAAACAGTAATCATTAATACTGTGACCTCACTGCTTCCTTGGATTCTGTGTTCTTTAACTTgtactttggattgtgggggaaaaggagcacccagagaaaacccacacgaacacggggaaaacatgcaaactccacacagaaacaccaactgaccctgctgaggcttaaaccaccgaccttgttgctgtgaggcaatcgtactacccactgtgccaccatgacacccatttctaaagaatagttttaataactcatttctaataactgatttcttttctctttgctatgatgacggcacataataatggactagatattttttaagacactctacactgcagttacattgcaactaatgtttcttacagactcttttatatctcaggattgatgtttgcacatgattgttcgagtaaaagttaaaaaaagttttcctatttcaaatttgttttaaaatgcttccatcctcaggtttcattttaacttttatatctgttttttcttcaaaactgcatttacattgaacttGATCATCCTTACTGATGATTGCTTTATAGCTCATATATTGATGTTGGCACATaattgttaaagggaaagttataaaatgttttcttattttttcttaatataaaatttgtattttcttagtttttattgtttgttttgttttttcaagctgtttgatgccttttcattattactttcacatatttttttctgcattgcagttgatgatttatatgagaatatgttgatgtttgtgctcaaattactttctgacttcagtcatttagatgcattttcattattacttccttatactattgtttttctctactctgcaataacattgcaattgcctcttactgatgattcctgatttataaatgtttttgaatgtatttcaaatatgcattttcttaaggtaatttgtctgatttcagtctgatgcattgttactgaactttagtcagtgtttctgtgatacagtttgataaattttcacagaaatcgtcttaaccctttaa
>TCONS_00064089
GCTCGAAAAGTATAAGGTAACTAATGAAACTAACGTGAAGCATGTTTGATGAccactttataaacacaacacctaggataatttaggagcttttaattgtaataaaatgccttttgaatgacacagatttttatgttggctaggtgatgacagtaagtaacgttactgtgatttgtgatctttctggggtgttaactgtaaagcaatggataattgcgtgaaaatcaaactaaaagaatgcaatcttgaggagttaatccccacatttgaagcacagGAGCGAACCTTTCCTCGTTTTTAGGTCAATTTGAATACAATTCAGAGGggtggcatgggggcgcagtgggtagtgctgtcgcctcacagcaagatggtcgctggtttgagccttggatgggtttcccctccacagtccaatgacatgcggtgtagctgaattggattgggaCCAATATTGCTGAGTATCTTCATCCATTGAATTCAAGAATCTATTGAGTTTCCTTATGTTCTCATCCTTGGAGACCACCACTTCTTTCAAGCCTTTGCTCACGTGCTGTGCTATTTATTATTGCAAAGTACATTACTTGCCAAAGTGGACGTTTGCTATAAAGCATTCTACATCTTTGGTGTGAACTACCCCAAGCAGTGTTCCCTGGTGTGGCAGACTGTGGCTTATGGACATCCTGGGGAGGAGACACAAGCAGTAAGGGTTCTGCTAGCATTAATTTTGCTGACA
>TCONS_00064091
agtccctttattaatctggggtcgccacagcggaatgaaccgccaacttatccagcatattttttacacagcggattcatgcagcatacattgactttgccagtgtggactttttttctgcaactagtgggtagcacattcgcctcatagcaacaaggtcacttgatcgatccttggctgggtcaataggcctttctgtgtggagtttgcatgttctccccgtgttcgcgtgggtttcctccaggtgcccaggtttccaaagacgtggtaaagGAGCGAACCTTTCCTCGTTTTTAGGTCAATTTGAATACAATTCAGAGGggtggcatgggggcgcagtgggtagtgctgtcgcctcacagcaagatggtcgctggtttgagccttggatgggtttcccctccac
>TCONS_00065191
TCACGCCCAGCCTGTTGATCGGTGGACGGGTAAGCGCGCATGGCATCGGAAGGAGCTCGAAAAGTATAAGGTAACTAATGAAACTAACGTGAAGCATGTTTGATGAccactttataaacacaacacctaggataatttaggagcttttaattgtaataaaatgccttttgaatgacacagatttttatgttggctaggtgatgacagtaagtaacgttactgtgatttgtgatctttctggggtgttaactgtaaagcagtaagtagtatttttactcttgtatttcttaagtttgttcatggatttttgtgacaatactttgatgcataagtgttgaattcagcttctaacaatgttttttttttatcaaaatatatacaataattgtcctgctctgcatgtacattttgtttagctgtatatctgtacattgaatagcaaatgttattaatttactatgagcattttacattctagACGTGATTTGAGCTATCTTTAATTAATCCTGTATGTAAGGGTCGTTTCATGCTAACGGAAATGTCTGAGCTAAGGCTAATTCCAACCTAATCATCTtcgactgcaaaaagaaaaagtttgaccACCGTTTTATGTGACACCCtggataattattatcatttaggagtatttttgtgatatagtgacttttggctaacatgatctttttttacttaattttgcttaaacgcttttatctgttattctttttcagatggataattgcgtgaaaatcaaactaaaagaa

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0007498 mesoderm development biological_process
GO:0001756 somitogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0006396 RNA processing biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0048856 anatomical structure development biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0048339 paraxial mesoderm development biological_process
GO:0048340 paraxial mesoderm morphogenesis biological_process
GO:0048341 paraxial mesoderm formation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0030902 hindbrain development biological_process
GO:0060322 head development biological_process
GO:0030684 preribosome cellular_component
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0005882 intermediate filament cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097957

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064088 False 1935 lncRNA 0.40 6 35910498 35914709
TCONS_00064087 False 1873 lncRNA 0.40 5 35910498 35914709
TCONS_00064090 False 1934 lncRNA 0.40 6 35910498 35914713
TCONS_00064089 False 736 lncRNA 0.42 5 35911525 35914410
TCONS_00064091 False 406 processed_transcript 0.50 3 35912621 35913507
TCONS_00065191 True 764 lncRNA 0.33 1 35913701 35914464
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_032978 brinp3a.1 coding downstream 131150 35675784 ~ 35779348 (-)
XLOC_032979 NA coding downstream 160577 35749066 ~ 35749921 (-)
XLOC_032977 rgs8 coding downstream 422318 35459369 ~ 35488180 (-)
XLOC_032976 rgs16 coding downstream 464388 35443430 ~ 35446110 (-)
XLOC_032975 rgs5a coding downstream 471092 35387367 ~ 35439406 (-)
XLOC_032981 NA coding upstream 206606 36121319 ~ 36124890 (-)
XLOC_032982 brinp3a.2 coding upstream 212792 36127505 ~ 36198052 (-)
XLOC_032983 BX936433.2 coding upstream 372825 36287538 ~ 36290625 (-)
XLOC_032984 NA coding upstream 471579 36386292 ~ 36393495 (-)
XLOC_032985 BX950188.3 coding upstream 564480 36479193 ~ 36502330 (-)
XLOC_032973 NA non-coding downstream 820303 35085032 ~ 35090195 (-)
XLOC_032966 NA non-coding downstream 1092309 34817183 ~ 34818189 (-)
XLOC_032965 NA non-coding downstream 1258359 34649795 ~ 34652139 (-)
XLOC_032964 CR385041.1 non-coding downstream 1266128 34644253 ~ 34644370 (-)
XLOC_032987 NA non-coding upstream 706597 36621310 ~ 36628097 (-)

Expression

Expression of XLOC_032980(CU137680.2) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.

Expression of XLOC_032980(CU137680.2) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.

Co-expression Network