XLOC_032982 (brinp3a.2)


Basic Information

Item Value
gene id XLOC_032982
gene name brinp3a.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 36127505 ~ 36198052 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064092
AGGGACCTCTAGATTTGGTAACATAGCCTGCTTATCATTCCAACCTCGTCCTGAGTTTTATGCATATCCTCCGAAAAGCCATTACAGAGGGCTACTTGTGTTTTAAACATGTGACTTGTGTGAAAGAGGGCGCGCGCTCGCGTCTGCCAGCGTTTATCCATtgaaatttctctctctctctctcacacacacacagacacacacacacacggaaagAGATGCAGAGTAGGAGGGTCAAGCAGAGCTATGTGATGGGACTGACTTTATAGAGGAATATCCACAGGCACTTCCAACAGAGACTGAGAAGCTTGAGTGTCGCAGTCCGTTGGCGGATGTTAAATTGAGACGCGCGCGTTAACTGAATAGCGCGATCTGTTTCTAACTGTTTAGTGGATTTATAATCGACATTATTTGACTAAATGCGGTTATTTCGTCTTCAAGGAATAATTCAAAGCTCTACAGGGATGACCTTACCTTCGCTGTACGATGGGGGAGATTTGTCACCGAAGTTGGACTATAGTGAAGTAGCGCCAGTTTAAATATTTAGGTGCTGCCCATACGACCTTTCGTCCATTTTGTCTGTACGCCAAACAGTTTTCGTTACTTCCGTGGCTTTTTATGGTGATGTaacaaacaataattataaaaactgATTCAGCGCAGAATGGGACGTGAACGGATGAAGTTTCAACACTGAGGAGCGTTATGgtgagAGTTTGCGTGGCCGAAGCCATGCCAATCTTCAGTGCTGGGTGGTGGAGTGTGGTCCTGCACCAGAGCCTGTGCTGCTGAAGCCGTGTGCTGCTCCCCCCATGGCTCCATGGGAGCTGCTGCTGCTGACTTTCAGCCTCCACTGCTGGCTGACAAGCTCTGCCAGTTTAGCTGAAGAAGGCCCTGCAGGACCCTTGGACTGGCTTCTTTCTGACAAGGGCCCATTTCACCACTCACAGGAGTACACTGAATTTGTGGAGAGGAACCGTCAAGGATTTTCCACAAGATACAAGATCTACAGGGAATTTGGCCGATGGAAAGTGAATAACTTGGCTGTGGAGCGACGGGATTTCCTGAACTCCCCCTTGCCTCTCACCCCGGAGTTTATAAGGAACATTCGACTCCTGGGACGCAGGCCCACAGCCCAACTAATTACTGACAACCTGATCAAGAAATATGGGACCCATTTTCTACTGTCAGCTACACTAGGAGGAGAGGAGGCTTTGACTATATTTGTGGACAAGAGAAAGTTGAGTAAGAAAGCAGAGGCAAGCGACTACACCAGTAACAGCACAGCGGTGACTCTGGAGGCCCTGCACCAGCTGGCTGCCTCCTATTTCATAGACAGAGAGAGTACTCTGCGAAAACTGCATCACATCCAGATTGCCTCCACTGCCATCAAGGTAACTGAAACCAGGACTGGTCCTCTCGGCTGCAGTAATTATGACAACCTGGATTCTGTCAGTTCTGTGCTGGTTCAGAGCCCTGAGAACAAAGTCCATTTGCAAGGCTTGCAGGTCATTTTGCCAGATTATCTCAGAGACACATTCGTCCAAGCAGCTTTAAGTTACATTGCCTGCAATGGAGAGGGAACTTTTGTCTGCCGAGGGAATGACTGCTGGTGCAAGTGTGACCCTAAGTTTCCAGAGTGCAACTGCCCCTACATGGATATCCAGGCCATGGAGGAAAGCCTTTTGCGAATCTCTGAATCCTGGGCTCTTACCTACAAAGAGTTTGAAGATTCAGATGAGTTCAAAACATTTCTGATGAGGCTGCCGCAGAATTTCTTTCTCAACTCTTCCACCATCCAACATTTGTGGTCGCTGGATGGTGTGTTTCAGCGGCGTTACGAGCAGCTGGAAAGCAGCATGAAAAGTCTCTTCAGACGAGCCCAGCGAGTGGTTTACAAGCTCTTCAGCCTCAGCAAGAGGTGCCAAAAGCAGCCCCATATCAACTTGCCGCGTGAAAGGCCACAGTCGTATTGGCTGAACTACTTCCAGTCTTTGCTATACTGCTCTGAAAACAACCAGCTGGGATCCTTCTCGGAAGAACTTCACACCTGCATTTGTGCATACGACCACAGCACCTGCCAGGTTCCCACACCATGCTCCGTTGGCGAAGGTGCCGCCTGTGCTGTGTGTGCCAGCGACAACCACACTCGCTGCGGCAGCTGCAACATCGGCTACATGCTAAGTCAAGGAGCCTGTCGACCAATGGTGGCAGATTCCACCGAGAACTACCTGGGCTTTGAAACTGATCTTCAAGACCTGGAGCTTCGCTATCTCCTCCAAAGAGCTGATCGGCGCTTGGAGGTCCACGCTATCTTTATAAGCAATGACATGCGCTTGAATAGCTGGTTCGATCCTTCATGGAGGAAGAGGATGTTGCTTACGCTAAAGAGTAATAAATACAAATCCAACCTAGTCCATATGCTTTTAGGCATCTCTCTTCAAATCTGCCTTACAAAAAACAGCACTCTGGAACCCGCTCTCACCCTCTTTATCAATCCCTTCGGAGGCAGCCACTCTGAAAGCTGGCTAATTCCTGTAAATGAGAACGGTTTTCCAGATTGGAAGTCGACTAAGCTGGATCTTCCACTGGAGTGCTTTAACTGGACTTTGACTTTTGGGAACAAGTGGAAGACTTTCTTTGAAACCATCCATATTTATTTGAGAAGCCGCATTAAAACTTCTGGAGCCGGGGGTAATGAGAGCATTTACCTGGAGCCTTTGGAAATGGCTGACCCTACTAGAAACCTGGGGTATATGAAGATTAACAGCATTCAAGTGTTCGGCTACAGTATGCATTTTGACCCGGAAGCGATCCGGGACTTGATCCTGCAGCTGGACTATCCATACACGCAGGGCTCGCAGGACTCGGCCTTGCTCCAGCTGCTGGAGATCCGAGACCGGGTCAACCGTCTCTCTCCGCCAGGTCAACAACCTCTGGATCTGTTTGCCTGCTTATTACGCCACCGTCTCAAACTGACAGCTAATGAGGTGGTGCGCATTCATGCCTCTCTCCAATCTTTTAATGCCCGTCTGCCCAACTCTCTGGATTATGAGACCACTAAACTCTGCAGCTAACAGCTAAAGCATCATAACAGACAGCAATAGAAGAATTGTAAAAACGGAGTCAAGCCTCCAAAGACTTTCGGTGAGAGAGACACTGTTTTTGTGACTAATAGAAGAAGTTGCTCAAAAGAACAGAATGATTTTTATTGTATAGTACACTGAGATCAAAGATGAGCTTTGGAAAATATATtgagtgtatgtttgtaatttttatatatgttttttttttctttcacgcTTCAGTGACAGTGCACTTTCCTTGGAAAGAATACAGTGATGTCAGTCGATTTTGTAGATAAATTGTTATTAAAACATAATGGTCGTAATTGAGTAACAGTTGCATTATTTATCAGCAGATTTTTTATGGCTACGTGACAGCTTAGTTTATTGGAAAATCAAATACGTTTTATAATTGCAACTGAGTGCACTTAATGATATGAACGTGATATACGACTTCGATAAAATAAGAATGAAACTGAATTATTAACATGGATATATTATGTGCTTGTTAGGTTCAAGTTCATTCCTTTTATCCAGATTTTATTGTAAGAGTGTATTTTTTTACTCATAATCAGAATGTGCTACATTACATTAGTGCACTGGCATATTATGACTTTCCCATATTTCTATATTGATTTTGCAAGTCTGCTACTGTATAGTGATGACTATTCTGAATCATAAGTTTgcctttatattatttttgttcccCTTAAGAAGTTGAGGGGGTGACTAAAGGGAATGGAGAGAGATTTAAATGctctgtctttttatttattgattttttattattattaatgccatTTTTAAAGCCATGGAGATTTCATCTGGGAAAAtaacaactcaggctcattctgaaaatgtaccaccatattcatttctggagagtgccaaatatgtcctagGAAGTACATTTTTTTGCcgtttgttttcacaaatccaccagaggccaccgtGTACCCTTTTTTTAATCGGATGTTAAATTTTTCTCGCAAGAACCATTCGGGCTTGCTGTTCTACCCTAAATCCACaagaggtcgctgtcgactgactgaccaatcaactgacccaccctcctccttccctaaacccaaccaatagtgttttcaaaagtatcaACTGATctacccacccacttccctaaacccaacgacagttttaaaaagcaaatcagaaaaaaagaaaagccctcatctgatttttaaaacattttcattttttaccacattctcacccttatatttacttcatttatatatattttttggtttctgtttttgtcttacctgctttctgaaactttTCTTCAACGAACTTGAACCCCATGGACGTGGTCAACTCATCTCTActtctcaagtctgccgacatacatggtgagctactggacaaactggtagcagtggaaaagctgtccatacggaggtaagcagtcagctggtaatcgcaaaaaggaacagcgtcataccgccacatagcgttcgttttaaaatCGAAaagcagccatacatacttctggctacaaaacttgcaatctccagaaatgtttataggggtatattttcagaatgagcctgtgttggaaaatAAAGAGTTATGTGAATATATTACTGCAAACCTAATGGAGCCGCACATATGCAATGTTTTGGGCTGTTTTGTATTGACGTTCAGGATTTCTCTAaacttttgtttactttttaccgCATTTGGAATTCAGGGTTTGTATTTACGAGCATGTTTCATCGttttatttttccatatttttttgaTTCATTTAGTCTTTTAAACCACACTTTGTTTCATCAGAAATGTTCTGAACCATAAAATATATCTGATTATAAAAGAGCCTTTATTGGAATGTAACAGTGATGCCAAAATGGGGCAACGATTGTGGAATCCAGTGTGCCTTTGTGAATACATAGTCTACAGTTTTGTTTGACATGTTTTGTGCATCTcagtatgtaattttatttatttttgtgtaaatattattttaaagctgTTTAAGCTTGTCAGAAagtgaatttaattgtttttatgcaGTTAATTTATTTCTCACTTATCTTTGCATTGCAGTGCATTCATTTACACAGCATGGATGCTAAATACTTAGAATCAACACACAGTGACAGATCCTTTAATGCCACCAAAGTGTCAATCGCCTCTTCATAATCTGTGTTTGCACCTTATACCTAGAAttagcacaataaataaaatgagccTTACTTAATTCACCTACATCCTCTTTTAAAATGCACATACTGTtttgcaaaacaaacacacagaagttAAACTGAAGGAAGAAAGCGTTTCATGTGAGGAAACTTGTAAAATGGAGGTAAATGGATGATGGGCTGATACTTATCCAGAGCAGATTCTCGTTTTTCTCATTCAAGGGATGTTACACATCTGTAGAAAATCCACCAGCGATTTATCCAGACCGTAGAATGCAAAGGTCAGAAGCAAACTGCTATCTGAAGTGAAATTACATATAATATGATATCAGAGACACCTTTAAAATCCCAAAAGCGAATCCGTTATATTGAGCTCCCAGAGCAAAGAAAGTTCTTAGAGCGAAGTCGACTTTTATGTTTTCCTCGAGCGTCTAACCGCAATGCAGCTCCTGCAACATTTTCACATGTGAAACACCCCACGCTGTAGCAATTACTCTGCGAACACAAATGACCAAGGGAGCAGTTACTGCCAGAATGCATACACAAATCACCTGCGCACCGCGCCGAGAGCCTGTAAAATGAGAGCTTGTCAGTTGTGCTGAAATGAGTTGACACGATGTTGTAATGACAAATATGACAATAAGAAATGGCAAAACATTACATAGGCGATCGGTCTTTCTCACAGCCTGACAAACGATTTATCACTCTGCTGTAATTGTGCAGAAAGAGCTCTGCAAAAGAAAAGACTGAGCATTGCATCATATTTACCGTGCAGCTCTACTGATGAAGATGGAAAACTCTTGAGCGCAGGCAGAGATTAAAGAAAGAGCGCGGATCAGCTTAGTAGGTTAGCGCTTTATTTGCTAAGCACTCGGAGGCAATGCGCCAACGCTTGATCAATAGTGGCCGTGTTGCCTCCTTGATCTCTTCAATGTAAACATTGTTATGTTCTTGTGATTCCAGATGAAGATGCATTGCTAACCTGACACCAACTTTATCTTGGGCTTTACCGTAGGTTTCTGGAAGGCTAGATACTGCAGTGAACAGGAGGCAGGCAAAAGGTAGCTGTCAACTGCCAATAAATCAATGTGCAGCTTTATTACCTGAGAGAACAAAAGGATCCGCAGGGAGATCAATGCCATCAAGAACCACCGACTCACAAACCAGTGGTATTTTGTTGTCCAGGGCCACGGCCGTATAAACATCGTTTTATTACCCGTGCTGTCCTTTCCGCTTGATGTGCTTCATGTGAGCAGAAATCGATTCTGGTGATACATACAATTAGAACTGACATTGGATCACATTATTGCTTTCACTTTGCTGTTGCGGAATTTTAAAAGCACATACTAAACATAGGGTTTAATTACAGG
>TCONS_00064093
ATGTGGTTTCACAGTGTTCCACATAAGTATGATGGTCTTTgtgagAGTTTGCGTGGCCGAAGCCATGCCAATCTTCAGTGCTGGGTGGTGGAGTGTGGTCCTGCACCAGAGCCTGTGCTGCTGAAGCCGTGTGCTGCTCCCCCCATGGCTCCATGGGAGCTGCTGCTGCTGACTTTCAGCCTCCACTGCTGGCTGACAAGCTCTGCCAGTTTAGCTGAAGAAGGCCCTGCAGGACCCTTGGACTGGCTTCTTTCTGACAAGGGCCCATTTCACCACTCACAGGAGTACACTGAATTTGTGGAGAGGAACCGTCAAGGATTTTCCACAAGATACAAGATCTACAGGGAATTTGGCCGATGGAAAGTGAATAACTTGGCTGTGGAGCGACGGGATTTCCTGAACTCCCCCTTGCCTCTCACCCCGGAGTTTATAAGGAACATTCGACTCCTGGGACGCAGGCCCACAGCCCAACTAATTACTGACAACCTGATCAAGAAATATGGGACCCATTTTCTACTGTCAGCTACACTAGGAGGAGAGGAGGCTTTGACTATATTTGTGGACAAGAGAAAGTTGAGTAAGAAAGCAGAGGCAAGCGACTACACCAGTAACAGCACAGCGGTGACTCTGGAGGCCCTGCACCAGCTGGCTGCCTCCTATTTCATAGACAGAGAGAGTACTCTGCGAAAACTGCATCACATCCAGATTGCCTCCACTGCCATCAAGGTAACTGAAACCAGGACTGGTCCTCTCGGCTGCAGTAATTATGACAACCTGGATTCTGTCAGTTCTGTGCTGGTTCAGAGCCCTGAGAACAAAGTCCATTTGCAAGGCTTGCAGGTCATTTTGCCAGATTATCTCAGAGACACATTCGTCCAAGCAGCTTTAAGTTACATTGCCTGCAATGGAGAGGGAACTTTTGTCTGCCGAGGGAATGACTGCTGGTGCAAGTGTGACCCTAAGTTTCCAGAGTGCAACTGCCCCTACATGGATATCCAGGCCATGGAGGAAAGCCTTTTGCGAATCTCTGAATCCTGGGCTCTTACCTACAAAGAGTTTGAAGATTCAGATGAGTTCAAAACATTTCTGATGAGGCTGCCGCAGAATTTCTTTCTCAACTCTTCCACCATCCAACATTTGTGGTCGCTGGATGGTGTGTTTCAGCGGCGTTACGAGCAGCTGGAAAGCAGCATGAAAAGTCTCTTCAGACGAGCCCAGCGAGTGGTTTACAAGCTCTTCAGCCTCAGCAAGAGGTGCCAAAAGCAGCCCCATATCAACTTGCCGCGTGAAAGGCCACAGTCGTATTGGCTGAACTACTTCCAGTCTTTGCTATACTGCTCTGAAAACAACCAGCTGGGATCCTTCTCGGAAGAACTTCACACCTGCATTTGTGCATACGACCACAGCACCTGCCAGGTTCCCACACCATGCTCCGTTGGCGAAGGTGCCGCCTGTGCTGTGTGTGCCAGCGACAACCACACTCGCTGCGGCAGCTGCAACATCGGCTACATGCTAAGTCAAGGAGCCTGTCGACCAATGGTGGCAGATTCCACCGAGAACTACCTGGGCTTTGAAACTGATCTTCAAGACCTGGAGCTTCGCTATCTCCTCCAAAGAGCTGATCGGCGCTTGGAGGTCCACGCTATCTTTATAAGCAATGACATGCGCTTGAATAGCTGGTTCGATCCTTCATGGAGGAAGAGGATGTTGCTTACGCTAAAGAGTAATAAATACAAATCCAACCTAGTCCATATGCTTTTAGGCATCTCTCTTCAAATCTGCCTTACAAAAAACAGCACTCTGGAACCCGCTCTCACCCTCTTTATCAATCCCTTCGGAGGCAGCCACTCTGAAAGCTGGCTAATTCCTGTAAATGAGAACGGTTTTCCAGATTGGAAGTCGACTAAGCTGGATCTTCCACTGGAGTGCTTTAACTGGACTTTGACTTTTGGGAACAAGTGGAAGACTTTCTTTGAAACCATCCATATTTATTTGAGAAGCCGCATTAAAACTTCTGGAGCCGGGGGTAATGAGAGCATTTACCTGGAGCCTTTGGAAATGGCTGACCCTACTAGAAACCTGGGGTATATGAAGATTAACAGCATTCAAGTGTTCGGCTACAGTATGCATTTTGACCCGGAAGCGATCCGGGACTTGATCCTGCAGCTGGACTATCCATACACGCAGGGCTCGCAGGACTCGGCCTTGCTCCAGCTGCTGGAGATCCGAGACCGGGTCAACCGTCTCTCTCCGCCAGGTCAACAACCTCTGGATCTGTTTGCCTGCTTATTACGCCACCGTCTCAAACTGACAGCTAATGAGGTGGTGCGCATTCATGCCTCTCTCCAATCTTTTAATGCCCGTCTGCCCAACTCTCTGGATTATGAGACCACTAAACTCTGCAGCTAA
>TCONS_00064094
TCCAACAGAGACTGAGAAGCTTGAGTGTCGCAGTCCGTTGGCGGATGTTAAATTGAGACGCGCGCGTTAACTGAATAGCGCGATCTGTTTCTAACTGTTTAGTGGATTTATAATCGACATTATTTGACTAAATGCGGTTATTTCGTCTTCAAGGAATAATTCAAAGCTCTACAGGGATGACCTTACCTTCGCTGTACGATGGGGGAGATTTGTCACCGAAGTTGGACTATAGTGAAGTAGCGCCAGTTTAAATATTTAGGTGCTGCCCATACGACCTTTCGTCCATTTTGTCTGTACGCCAAACAGTTTTCGTTACTTCCGTGGCTTTTTATGGTGATGTaacaaacaataattataaaaactgATTCAGCGCAGAATGGGACGTGAACGGATGAAGTTTCAACACTGAGGAGCGTTATGgtgagAGTTTGCGTGGCCGAAGCCATGCCAATCTTCAGTGCTGGGTGGTGGAGTGTGGTCCTGCACCAGAGCCTGTGCTGCTGAAGCCGTGTGCTGCTCCCCCCATGGCTCCATGGGAGCTGCTGCTGCTGACTTTCAGCCTCCACTGCTGGCTGACAAGCTCTGCCAGTTTAGCTGAAGAAGGCCCTGCAGGACCCTTGGACTGGCTTCTTTCTGACAAGGGCCCATTTCACCACTCACAGGAGTACACTGAATTTGTGGAGAGGAACCGTCAAGGATTTTCCACAAGATACAAGATCTACAGGTTAGTTGCACTTGAACTGAAGACTGTGTGATTTTATGCTTGCTGTGGTAgtcactgactacgtttacatggacatcattaatcgaatatttgc

Function

symbol description
brinp3a.2 Predicted to be involved in cellular response to retinoic acid; negative regulation of mitotic cell cycle; and positive regulation of neuron differentiation. Predicted to act upstream of or within regulation of cell cycle. Predicted to be active in dendrite; endoplasmic reticulum; and neuronal cell body. Is expressed in several structures, including fin; fin bud; gill; head; and muscle. Human ortholog(s) of this gene implicated in coronary artery disease and myocardial infarction. Orthologous to human BRINP3 (BMP/retinoic acid inducible neural specific 3).

GO:

id name namespace
GO:0071300 cellular response to retinoic acid biological_process
GO:0045930 negative regulation of mitotic cell cycle biological_process
GO:0045666 positive regulation of neuron differentiation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0030425 dendrite cellular_component
GO:0043025 neuronal cell body cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-131119-53 Predicted to be involved in cellular response to retinoic acid; negative regulation of mitotic cell cycle; and positive regulation of neuron differentiation. Predicted to act upstream of or within regulation of cell cycle. Predicted to be active in dendrite; endoplasmic reticulum; and neuronal cell body. Is expressed in several structures, including fin; fin bud; gill; head; and muscle. Human ortholog(s) of this gene implicated in coronary artery disease and myocardial infarction. Orthologous to human BRINP3 (BMP/retinoic acid inducible neural specific 3).

Ensembl:

ensembl_id ENSDARG00000061051

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064092 False 6603 mRNA 0.43 8 36127505 36198052
TCONS_00064093 False 2409 mRNA 0.50 8 36131031 36182115
TCONS_00064094 True 818 processed_transcript 0.47 2 36178345 36197764

Neighbor

gene id symbol gene type direction distance location
XLOC_032981 NA coding downstream 2615 36121319 ~ 36124890 (-)
XLOC_032980 CU137680.2 coding downstream 212792 35910498 ~ 35914713 (-)
XLOC_032978 brinp3a.1 coding downstream 348157 35675784 ~ 35779348 (-)
XLOC_032979 NA coding downstream 377584 35749066 ~ 35749921 (-)
XLOC_032977 rgs8 coding downstream 639325 35459369 ~ 35488180 (-)
XLOC_032983 BX936433.2 coding upstream 89486 36287538 ~ 36290625 (-)
XLOC_032984 NA coding upstream 188240 36386292 ~ 36393495 (-)
XLOC_032985 BX950188.3 coding upstream 281141 36479193 ~ 36502330 (-)
XLOC_032986 her6 coding upstream 353031 36551083 ~ 36552844 (-)
XLOC_032987 NA coding upstream 423258 36621310 ~ 36628097 (-)
XLOC_032973 NA non-coding downstream 1037310 35085032 ~ 35090195 (-)
XLOC_032966 NA non-coding downstream 1309316 34817183 ~ 34818189 (-)
XLOC_032989 CT033823.1 non-coding upstream 535657 36733709 ~ 36733826 (-)

Expression


Co-expression Network