XLOC_032983 (BX936433.2)


Basic Information

Item Value
gene id XLOC_032983
gene name BX936433.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 36287538 ~ 36290625 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064095
ggttcattgcgatcccaaggttcactgcggttttccacaagatgcagaaacttttgacatatgaattcatcttgactaaggaactcttcacagcactgcagctaaacagtcacaacctcacagagctgcacaactgccccactcagatcagtgttgaagctggaacctcatcttgtgtacagcaaaggcagagctgaaaattcactgtttgtcttgtattgtgtgtggcaaaacctggaataacacatgggagccctccaggaattcctgacactttacgcccaagtctcctcatgctaaccggattgcaatatgacagtctagtcagcataaacacctggactcaccaagcacactttggttctcagtgttttgtaaaaatagtttttggTATTCTTCGGtaaatacttgaatatgttttgaacttattctacttttgatgtttaagttcagaaagttgttattataaacataatttgcatttgtcatgaacttgacttcttgttgttgtgaaagctgtttattatgatggcatttccaaaggcatcatttgaaaagattttttgcagtgcagttttacttgagcttgacataccagatgtatgacatgaataaatatcacaaaataaatataataataataatacaaaatatacatttccttcaattataattgtttttaatcatttatatatgtatggtaatatattattgcattaaaaacttataaaatatatatttttggttaaaatatatatttttgcatttttgtgtgatttttattatttatttttatttgtggcattataaataaattataaatgtttcattaaaaa
>TCONS_00064096
ACTTACATTACTTTACAACTGCTTAATGCAGTACTGATGTATCTAGTAGTTTAGTGGGTTTAACTaatgtcacatctgtttttattcatttcagatgcagaaacttttgacatatgaattcatcttgactaaggaactcttcacagcactgcagctaaacagtcacaacctcacagagctgcacaactgccccactcagatcagtgttgaagctggaacctcatcttgtgtacagcaaaggcagagctgaaaattcactgtttgtcttgtattgtgtgtggcaaaacctggaataacacatgggagccctccaggaattcctgacactttacgcccaagtctcctcatgctaaccggattgcaatatgacagtctagtcagcataaacacctggactcaccaagcacactttggttctcagtgttttgtaaaaatagtttttggTATTCTTCGGtaaatacttgaatatgttttgaacttattctacttttgatgtttaagttcagaaagttgttattataaacataatttgcatttgtcatgaacttgacttctt
>TCONS_00065192
CATTTTGGACTACACTTACATTACTTTACAACTGCTTAATGCAGTACTGATGTATCTAGTAGTTTAGTGGGTTTAACTaatgtcacatctgtttttattcatttcagatgcagaaacttttgacatatgaattcatcttgactaagggtaatgtttttgttcagaattaatcattatttaaaatcattgtattttctttgttattatgtacagattttaaaagaatgtactgtcttttaataaagaactcttcacagcactgcagctaaacagtcacaacctcacagagctgcacaactgccccactcagatcagtgttgaagctggaacctcatcttgtgtacagcaaaggcagagctgaaaattcactgtttgtcttgtattgtgtggtaagtcatagttttattaatttttttattttattgcaacactAAGTAGTCCATTCAGTGGCCAAAATGATATAAAGGGCCTAAAATGGGACTGACGTGatcattgttttgatttctagataagtactcatggggctacacatgcagctgaagttagcttcattgagtaggacatttcttttagtatactcttaaagagattcacccaaaaatgaaaattctgtcattattgactcatccttcacttgttccaaatatgtCTGACTTGCttacttcagttaaacacaaaaaaattatattttaaagaaagatgaaaacctgcaaacattaacttccatagtatttgttttttcctactatgtatgtcaatgttttcagctttccagctttcttcaaaaaacttccttcatgtttaacacaaagtaacttggaagtttttaaaaaaggtttacaaccacttaaaggagagtaaatagtaaactgttcctttaacccaatctagttgactttactagaaaattgtatagaaacccagtggcttaaaccccttacattttatacaaggtacaacttaacagccatacttgaattaaaatattactgtaagttcaagaagattgtaaaggttctaggttaatttaaagtgggctgtttagtttcaccttgtgtaAAAAACATAAAGGATTTAAGGCAACATGTTTCGATGCAGTTTTctaataaagtcaactagtttgggttaagagtgtaatgggttacagtaatagcagtgaatcatgcaggcataaaataaatgtttagccatgtaaagcaataagcttgttataatttagaaatattttagggtgaagcacagtatgctgttgtagttttcatataattgatgagtcaaacatgagatgtgttttaaattgcaagacGTGAATTAACAATATCTTCATCAAGATTCAAATCTTGCatcttatattttttaaggttttggcccaataatacccatattctgctatttaaaaaatcatgctggaatttgtgtcagcattcccttcaatgaaaactacaacagtggacatcagtggtgataaaaatgtatgtgaaggataagggtgttcataatgagaagtgcagtcactatcctgatctctgagtttgtagaactgacagatctgcttggaataaatggaaacatgctggaaatgtttaacctattatacagttaattcaagagtgccaggtttaatgacactttacatatataaataaatatcactgaactttctaaatgaaacctaacgctcattctttgttcagtaatgatattgtgcacttctaatactttacagtggcaaaacctggaataacacatgggagccctccaggaattcctgacactttacgcccaagtctcctcatgctaaccggattgcaatatgacagtctagtcagcataaacacctggactcaccaagcacactttggttctcagtgttttgtaaaaatagtttttggTATTCTTCGGtaaatacttgaatatgttttgaacttattctacttttgatgtttaagttcagaaagttgttattataaacataatttgcatttgtca

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0001756 somitogenesis biological_process
GO:0001757 somite specification biological_process
GO:0035282 segmentation biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0007379 segment specification biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0046983 protein dimerization activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000103194

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064095 False 836 lncRNA 0.32 4 36287538 36290625
TCONS_00064096 False 556 lncRNA 0.38 3 36287871 36289861
TCONS_00065192 True 1989 lncRNA 0.33 1 36287886 36289874

Neighbor

gene id symbol gene type direction distance location
XLOC_032982 brinp3a.2 coding downstream 89486 36127505 ~ 36198052 (-)
XLOC_032981 NA coding downstream 162648 36121319 ~ 36124890 (-)
XLOC_032980 CU137680.2 coding downstream 372825 35910498 ~ 35914713 (-)
XLOC_032978 brinp3a.1 coding downstream 508190 35675784 ~ 35779348 (-)
XLOC_032979 NA coding downstream 537617 35749066 ~ 35749921 (-)
XLOC_032984 NA coding upstream 95667 36386292 ~ 36393495 (-)
XLOC_032985 BX950188.3 coding upstream 188568 36479193 ~ 36502330 (-)
XLOC_032986 her6 coding upstream 260458 36551083 ~ 36552844 (-)
XLOC_032987 NA coding upstream 330685 36621310 ~ 36628097 (-)
XLOC_032988 opa1 coding upstream 427360 36717985 ~ 36795219 (-)
XLOC_032973 NA non-coding downstream 1197343 35085032 ~ 35090195 (-)
XLOC_032966 NA non-coding downstream 1469349 34817183 ~ 34818189 (-)
XLOC_032989 CT033823.1 non-coding upstream 443084 36733709 ~ 36733826 (-)
XLOC_032990 CT033823.3 non-coding upstream 453509 36744134 ~ 36744251 (-)

Expression


Co-expression Network