XLOC_032983 (BX936433.2)


Basic Information

Item Value
gene id XLOC_032983
gene name BX936433.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 36287538 ~ 36290625 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064095
ggttcattgcgatcccaaggttcactgcggttttccacaagatgcagaaacttttgacatatgaattcatcttgactaaggaactcttcacagcactgcagctaaacagtcacaacctcacagagctgcacaactgccccactcagatcagtgttgaagctggaacctcatcttgtgtacagcaaaggcagagctgaaaattcactgtttgtcttgtattgtgtgtggcaaaacctggaataacacatgggagccctccaggaattcctgacactttacgcccaagtctcctcatgctaaccggattgcaatatgacagtctagtcagcataaacacctggactcaccaagcacactttggttctcagtgttttgtaaaaatagtttttggTATTCTTCGGtaaatacttgaatatgttttgaacttattctacttttgatgtttaagttcagaaagttgttattataaacataatttgcatttgtcatgaacttgacttcttgttgttgtgaaagctgtttattatgatggcatttccaaaggcatcatttgaaaagattttttgcagtgcagttttacttgagcttgacataccagatgtatgacatgaataaatatcacaaaataaatataataataataatacaaaatatacatttccttcaattataattgtttttaatcatttatatatgtatggtaatatattattgcattaaaaacttataaaatatatatttttggttaaaatatatatttttgcatttttgtgtgatttttattatttatttttatttgtggcattataaataaattataaatgtttcattaaaaa
>TCONS_00064096
ACTTACATTACTTTACAACTGCTTAATGCAGTACTGATGTATCTAGTAGTTTAGTGGGTTTAACTaatgtcacatctgtttttattcatttcagatgcagaaacttttgacatatgaattcatcttgactaaggaactcttcacagcactgcagctaaacagtcacaacctcacagagctgcacaactgccccactcagatcagtgttgaagctggaacctcatcttgtgtacagcaaaggcagagctgaaaattcactgtttgtcttgtattgtgtgtggcaaaacctggaataacacatgggagccctccaggaattcctgacactttacgcccaagtctcctcatgctaaccggattgcaatatgacagtctagtcagcataaacacctggactcaccaagcacactttggttctcagtgttttgtaaaaatagtttttggTATTCTTCGGtaaatacttgaatatgttttgaacttattctacttttgatgtttaagttcagaaagttgttattataaacataatttgcatttgtcatgaacttgacttctt
>TCONS_00065192
CATTTTGGACTACACTTACATTACTTTACAACTGCTTAATGCAGTACTGATGTATCTAGTAGTTTAGTGGGTTTAACTaatgtcacatctgtttttattcatttcagatgcagaaacttttgacatatgaattcatcttgactaagggtaatgtttttgttcagaattaatcattatttaaaatcattgtattttctttgttattatgtacagattttaaaagaatgtactgtcttttaataaagaactcttcacagcactgcagctaaacagtcacaacctcacagagctgcacaactgccccactcagatcagtgttgaagctggaacctcatcttgtgtacagcaaaggcagagctgaaaattcactgtttgtcttgtattgtgtggtaagtcatagttttattaatttttttattttattgcaacactAAGTAGTCCATTCAGTGGCCAAAATGATATAAAGGGCCTAAAATGGGACTGACGTGatcattgttttgatttctagataagtactcatggggctacacatgcagctgaagttagcttcattgagtaggacatttcttttagtatactcttaaagagattcacccaaaaatgaaaattctgtcattattgactcatccttcacttgttccaaatatgtCTGACTTGCttacttcagttaaacacaaaaaaattatattttaaagaaagatgaaaacctgcaaacattaacttccatagtatttgttttttcctactatgtatgtcaatgttttcagctttccagctttcttcaaaaaacttccttcatgtttaacacaaagtaacttggaagtttttaaaaaaggtttacaaccacttaaaggagagtaaatagtaaactgttcctttaacccaatctagttgactttactagaaaattgtatagaaacccagtggcttaaaccccttacattttatacaaggtacaacttaacagccatacttgaattaaaatattactgtaagttcaagaagattgtaaaggttctaggttaatttaaagtgggctgtttagtttcaccttgtgtaAAAAACATAAAGGATTTAAGGCAACATGTTTCGATGCAGTTTTctaataaagtcaactagtttgggttaagagtgtaatgggttacagtaatagcagtgaatcatgcaggcataaaataaatgtttagccatgtaaagcaataagcttgttataatttagaaatattttagggtgaagcacagtatgctgttgtagttttcatataattgatgagtcaaacatgagatgtgttttaaattgcaagacGTGAATTAACAATATCTTCATCAAGATTCAAATCTTGCatcttatattttttaaggttttggcccaataatacccatattctgctatttaaaaaatcatgctggaatttgtgtcagcattcccttcaatgaaaactacaacagtggacatcagtggtgataaaaatgtatgtgaaggataagggtgttcataatgagaagtgcagtcactatcctgatctctgagtttgtagaactgacagatctgcttggaataaatggaaacatgctggaaatgtttaacctattatacagttaattcaagagtgccaggtttaatgacactttacatatataaataaatatcactgaactttctaaatgaaacctaacgctcattctttgttcagtaatgatattgtgcacttctaatactttacagtggcaaaacctggaataacacatgggagccctccaggaattcctgacactttacgcccaagtctcctcatgctaaccggattgcaatatgacagtctagtcagcataaacacctggactcaccaagcacactttggttctcagtgttttgtaaaaatagtttttggTATTCTTCGGtaaatacttgaatatgttttgaacttattctacttttgatgtttaagttcagaaagttgttattataaacataatttgcatttgtca

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0001756 somitogenesis biological_process
GO:0001757 somite specification biological_process
GO:0035282 segmentation biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0007379 segment specification biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0046983 protein dimerization activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000103194

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064095 False 836 lncRNA 0.32 4 36287538 36290625
TCONS_00064096 False 556 lncRNA 0.38 3 36287871 36289861
TCONS_00065192 True 1989 lncRNA 0.33 1 36287886 36289874
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_032982 brinp3a.2 coding downstream 89486 36127505 ~ 36198052 (-)
XLOC_032981 NA coding downstream 162648 36121319 ~ 36124890 (-)
XLOC_032980 CU137680.2 coding downstream 372825 35910498 ~ 35914713 (-)
XLOC_032978 brinp3a.1 coding downstream 508190 35675784 ~ 35779348 (-)
XLOC_032979 NA coding downstream 537617 35749066 ~ 35749921 (-)
XLOC_032984 NA coding upstream 95667 36386292 ~ 36393495 (-)
XLOC_032985 BX950188.3 coding upstream 188568 36479193 ~ 36502330 (-)
XLOC_032986 her6 coding upstream 260458 36551083 ~ 36552844 (-)
XLOC_032987 NA coding upstream 330685 36621310 ~ 36628097 (-)
XLOC_032988 opa1 coding upstream 427360 36717985 ~ 36795219 (-)
XLOC_032973 NA non-coding downstream 1197343 35085032 ~ 35090195 (-)
XLOC_032966 NA non-coding downstream 1469349 34817183 ~ 34818189 (-)
XLOC_032989 CT033823.1 non-coding upstream 443084 36733709 ~ 36733826 (-)
XLOC_032990 CT033823.3 non-coding upstream 453509 36744134 ~ 36744251 (-)

Expression

Expression of XLOC_032983(BX936433.2) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Expression of XLOC_032983(BX936433.2) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Co-expression Network