XLOC_032986 (her6)


Basic Information

Item Value
gene id XLOC_032986
gene name her6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 36551083 ~ 36552844 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064098
GAAAGTTACTGTGGGAAAGAAAGTTTGGGAAGTTTCACACGAGCCGTTCGCGTGCAGCCGGAGATATAAATAAGACCAACACGACGCTGAGGCAGGCAGTTGCTACGACCGCTGGCGAACGGTGAAATCAGAGACTGTGACATCATTGCCGCACCAGTTGAACTCGGGACACTTCGTGCGGATATCCATTCATAACTGGAACTGTATCAGCGTACTTGACAGCGTTTACTCCACTAGAAGCAGCTGTGCGGGAGGATTTCTTTTTATAAACAAGATCACGAAAGGATACTTCCCAGAGAAGATGCCTGCCGATATCATGGAAAAAAACTCCTCTTCTCCGGTCGCCGCGACTCCGGCGAGCATGAACACTACACCTGATAAACCCAAAACGGCTTCGGAACACAGAAAGtcTTCTAAACCCATTATGGAGAAAAGAAGAAGAGCGAGAATCAACGAAAGCTTGGGTCAGCTGAAAACGTTAATCTTGGATGCTCTGAAAAAAGATAGCTCCAGACACTCTAAACTTGAGAAAGCCGACATCCTGGAGATGACAGTGAAACATCTCAGAAACATGCAGCGCGCACAAATGACCGCTGCCCTAAACACAGATCCCACCGTTCTTGGGAAGTACCGAGCTGGATTCAGTGAATGCATGAACGAGGTTACCCGGTTCCTGTCCACATGTGAAGGGGTTAACACCGAGGTCAGGACTAGGCTGCTAGGTCACCTAGCCAGCTGCATGACACAGATCAACGCCATGAACTATCCAACACAGCACCAGATACCTGCCGGGCCTCCTCATCCATCCTTCAGTCAACCCATGGTTCAGATCCCCAGCGCGACTCAGCAAGCCAACGTTGTGCCTCTTAGCGGAGTCCCCTGCAAAAGCGGCTCATCCTCCAACTTGACTTCTGACGCAACTAAAGTATATGGGGGTTTCCAGCTTGTGCCGGCAACCGACGGACAGTTCGCCTTTTTGATTCCCAACGCTGCCTTTGCTCCAAACGGCCCTGTTATTCCAGTCTACGCAAACAATTCCAACACACCGGTTCCGGTGGCCGTTTCTCCGGGAGCACCGTCCGTCACGTCAGACTCCGTTTGGCGGCCTTGGTAGACTccgaggagaaaaaaaaactcttaaaagactcttaaaaaacaaatgacacttgtttTCTTTGTTCAGCGTtactttttttgtgctttttgtataaagagattgtgttggttttatgAGATGATGCACTATATTTGTATAGATCAAAAGGCAGAGAAGTTCATATTgaaataagttttgtattgttgAATTCCGTtcaatgcatttttatatttgcgGTATCTTTTCCACGTTGTGATGCCAAAGATATGTTGAATGCGCTTTCAAGTTTCTTCTTTTTGGAAgacaaataaatgacatttgaaaTGAAAA
>TCONS_00064099
AGTTGCTACGACCGCTGGCGAACGGTGAAATCAGAGACTGTGACATCATTGCCGCACCAGTTGAACTCGGGACACTTCGTGCGGATATCCATTCATAACTGGAACTGTATCAGCGTACTTGACAGCGTTTACTCCACTAGAAGCAGCTGTGCGGGAGGATTTCTTTTTATAAACAAGATCACGAAAGGATACTTCCCAGAGAAGATGCCTGCCGATATCATGGAAAAAAACTCCTCTTCTCCGGTCGCCGCGACTCCGGCGAGCATGAACACTACACCTGATAAACCCAAAACGGCTTCGGAACACAGAAAGtcTTCTAAACCCATTATGGAGAAAAGAAGAAGAGCGAGAATCAACGAAAGCTTGGGTCAGCTGAAAACGTTAATCTTGGATGCTCTGAAAAAAGATGTAAGTACCGAAAGTCCGACTGAGTCTTTCAGTTAGGCTATATCTGGCTGGAATATTAATGCATTTCTTTATATAGCCGCATATCTAAATCAGTCTCTTTCTTCACTCTCAGAGCTCCAGACACTCTAAACTTGAGAAAGCCGACATCCTGGAGATGACAGTGAAACATCTCAGAAACATGCAGCGCGCACAAATGACCGCTGCCCTAAACACAGATCCCACCGTTCTTGGGAAGTACCGAGCTGGATTCAGTGAATGCATGAACGAGGTTACCCGGTTCCTGTCCACATGTGAAGGGGTTAACACCGAGGTCAGGACTAGGCTGCTAGGTCACCTAGCCAGCTGCATGACACAGATCAACGCCATGAACTATCCAACAC

Function

symbol description
her6 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including Notch signaling pathway; nervous system development; and somite specification. Predicted to be active in nucleus. Is expressed in several structures, including anterior neural keel; mesoderm; nervous system; neuronal stem cell; and pectoral fin. Orthologous to human HES1 (hes family bHLH transcription factor 1).

GO:

id name namespace
GO:0021794 thalamus development biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0001757 somite specification biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0045665 negative regulation of neuron differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-144 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including Notch signaling pathway; nervous system development; and somite specification. Predicted to be active in nucleus. Is expressed in several structures, including anterior neural keel; mesoderm; nervous system; neuronal stem cell; and pectoral fin. Orthologous to human HES1 (hes family bHLH transcription factor 1).

Ensembl:

ensembl_id ENSDARG00000006514

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064098 False 1426 mRNA 0.47 4 36551083 36552844
TCONS_00064099 True 788 lncRNA 0.47 3 36551736 36552747

Neighbor

gene id symbol gene type direction distance location
XLOC_032985 BX950188.3 coding downstream 48753 36479193 ~ 36502330 (-)
XLOC_032984 NA coding downstream 157588 36386292 ~ 36393495 (-)
XLOC_032983 BX936433.2 coding downstream 260458 36287538 ~ 36290625 (-)
XLOC_032982 brinp3a.2 coding downstream 353031 36127505 ~ 36198052 (-)
XLOC_032981 NA coding downstream 426193 36121319 ~ 36124890 (-)
XLOC_032987 NA coding upstream 68466 36621310 ~ 36628097 (-)
XLOC_032988 opa1 coding upstream 165141 36717985 ~ 36795219 (-)
XLOC_032989 CT033823.1 coding upstream 180865 36733709 ~ 36733826 (-)
XLOC_032990 CT033823.3 coding upstream 191290 36744134 ~ 36744251 (-)
XLOC_032991 CT033823.2 coding upstream 217095 36769939 ~ 36770069 (-)
XLOC_032980 CU137680.2 non-coding downstream 636370 35910498 ~ 35914713 (-)
XLOC_032992 NA non-coding upstream 789484 37342328 ~ 37344594 (-)

Expression

Expression of XLOC_032986(her6) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Expression of XLOC_032986(her6) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Co-expression Network