G1400047


Basic Information

Item Value
gene id G1400047
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 64159170 ~ 64244664 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1598750
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggagagtgatTTAGTGAAAGAGAGAATGTCTATGTGCTGTGTGGGCATGTGTAAATGATGCGTGTACGTTGTGTGCATGTGTATTTACATATTTGTCTACAtgagtatatatgtgtgtgtgtccatataaATCTACCTGTATGTATGTAAGGGGGAGTATAACCACTAATGCCCTCAGAGTAAATGGCTCCCCCTGGGAGCTCAGTGGCAGATGTTACGCTGGCAGGGCTGGTGCAGGTAGGTGTTTCTAGCGTGGGCTGCGTGGCGGGGAACCTGCTCCCTAGTGCGGTTCTGGCGCTGGATGCGGTTGCGTCCAAGGTGGCGCCTCTCAGTGCGGGCCTTGCCCCTCTGAACCCTGGCCACCTGGGTCACCTTGGCCAGGGTACCAGCCTGGGCAGCGgctcctcgggtcaccctggtGGGCATGGTATTATGGACGGCAGAGGTAGCGGCTGGTTCTGC
>TU1598747
GTCAACCTGagtgtttattgttgttgttgttgttgttgttgttgtgtggtaCCTGCGTTTTTCTGAATGGATGTTATATTAACCCATCCGTTGGTGGTTGCATAGGTCTTCACTGTCTATGGACTTGACTGTCTATGGACTTGACTGTCCACTCAGGGATGGAACAATTCAGTACATCACAAAAACCATGCAGAAATAGTGAAAGGCACGATCACCATAGATATCAGATACACCAATCTTTTTTATATGTCTATAAATAGTTGTTTTGACGGGGGAGGGGTGTACCCATCCGAGATGGTACGTGGGTGAACCCCAAAGTATCTTAAAGCTGCCATCATTTTAGGGCGCAAAGCAGAACAAAAATAATCCACACACAATCAACCCCCTTTCTTTTAAAACGTTAACATACCAGGTGAACAACTGTTATAATAACTAAACGGGGAAAAATACaagcatatttttttttgttgatacatttcatttcagattttttttcaatCTATCTGCTTACTCCATCCTCTGTCACAtcccctctttcttcctccctccctcccccacaacTCTCACATCACACTAGACACACGTGCACCTGGTGGCCCCGCCCTCTCTCTGTGATTGGCGGGTTGCCACCCTAAACTCACACCTTTCATTAGTCCCACACTACATACTCAGAAAACAACAACTTGGAGATAACATGGACGTAAAGGTGAGAGGGTGATGGAAAGAAGGAAAAgaacaacaagaaaaagagaaAAACAGTCTCGCAGTGAGGACCAACAAGGCCTTGTTAGAGGTggtgagttacacacacacacacacacacacacacacacacagctatggtcTCATGTATaggccccctcccctctctctttgtaaAATGTCTTCATCATGTGAGTAAGAAGTGTGACCACAGAGATACTGTAGTATAAGGTTCAGAAAACCCTAGGGGTTTAGGAAGTATGGAGACcagatgtgtgtgtatctgtgtgtgtgagtgagtcgtTACTGCAATCCACACAATGCATCATTCATAGGATCAAACAGAGTTACATACAGTCATCATTTAAAACATCAACAGAAAATAAATATACataatattaataattatatCATATTAGTAGatcattcaaataaaatataGTAATTTACAAGATAGTTGGCGATACGTTGAGTGGAAAATGGTGGTTTGTGATTGAAGGGACAAATAAATGTTTCTAGTTCAGAACATTCTAAACAATAAGAACAATTTCTCACCTCACTCTCACTGTATCTAGAGAACAATTCCACTGCTCCCACAAATACATCTTTATACTTTGAAATATGGGTTGTGTTATGATGACGCCAGCATGAAATGATCCTGTGTCGTTACAAGTTATTACACTTTTATCCCCCTAGAGGGCAGTGTCTAATTGGAACGTTAACACATCTAACCCAAAAGCTCCAATAGGGTACATCTCAATTGGTCACATCTCAGTGTAGTTTAAGGAAAGGATAAGTGGATAGGATGCCACTTTAGATTATTGAGATGCATCCTTACTGTCCTATTCAGGAAAGAGGCAGGGACAGTCTTGTCCTCAGTCAAGATGGTAGCTACTTTAAGGACTCTAATCCTGAGTCGCTTTGACACCTAACGGCAAGGAGCATTACAACCTGTATTCTAATATGTACAAGAAAAATAATTGATCATTATTTGTCTTTTGAAGTATTTTTTTGAACACACatcctctcacactctcacagacCTTTGATGGTTtgatacaaaacaaaaagaaaaagTAAACATCCCAAAGGAGAATAAAAGACATCACACAGCTAAAACTCACCAAAATGTATGACAGTGCAAACTTACATCCATGTCTCAAATCATTTACAAACTTTAGTATATAGTCATATACACTTCAGCACCATAGTTTACTATTGTAGTTGAATACATCTCTGTAAGCTAGATCTTAAGGTGGGGGACACTGTTACGGCTGGATGTGCTATTAGGAGGCCAGGGAGTGGGTGTAGAACTAATTCTCTGTCCTTGAGCTAGTCTTTACTAGCAACTCTGAGCAGTATCAGCCCGGTggacatcgtgtgtgtgtgtgtgttcaccccgAGTCTCCTACCATGATTACCCTGTTGTCACTGAATGACGTGAAGTGAAAAGGGATTGTTCGATGTTATCTATTTCCCTGTTTGTCTTTTCATGGGTAAGGTTGTCACTTGATTAATATTTAGTTAGGGGGGAGGTGTCTTAATGCAgaagcatcacagcacaacaACATCAGTTGGAGCCCAATGTGTGTGCTGAGCAAATGCATATAGATttgttctcttttttttttgACTATTCTCCTCAAAGTGTGAATCTTTCACAGTCATTCTGTCAAACTAGGCCAAGTTTTTAGGTTGTCAGCTATTTGGATGAAACGATGTGCTCTCATTATGGGGCTGCAGGGAACAGGCTTTTCCtgtcacagacatcattcagagAGCATTGGTTAGGCCTACCTTCTCCATAACTTTAATAACAGTagcagacaaacaaacaaaccaaaataaaataaagagtTGCCATCTATACCGCCTTGCACCTACTTTAGCCTGTCATACCTTGTAACCTACAGGCAACCCTTGGCTAGTTTCCCTACATATATCATTATGGTACGTCCCAACAAAGTAATTTGCACAGGACATACACAGTTTACTATGCACAGTCATTGAAGCTAGCTATACTAGACTTCTTATGACCAGACATCTCTGAATTACTTTCCTGATCGTGTTGTAGTTGTTGAACAAAAACGTTTAGGAAATTAGGGAATCAGTTTCCTGCTTTGCAAGTCTGCCTGACTTGAGATAAGAGTGCCTGTTTGTTTCTGCAGTGGCAAACTTGTCTTAGTCACAGATGGTAAGCCAAATATGTAAAAGTAGCCAGTTAGGCATTCTAAAAATTAACTATTGGTTGCCCAGAAAGCTACACTACACAGTCAACTACATCTACTCTGGTTCCTCTGTCATCCTATCTAAACTCTCCAATTCGTCGTTTTTGACTTCTTTTTACTCTTTAGTCTGTTTtcgtcttcctctctttcctctaccTGCTTCCATCCCTCACATTGGGACAAGAGGACAAACACCTCTTCTGGTTTTTCTCCTCTCTCACTGTAATGTACACGGTATACTCTTCCTTTTTGCGAAcagatttttttattaaaaaatgttttgtacCTCAAACACGGCAAATAAAGGACAAGATGAGGTGTTTTTCCTGTGGGAAGCCTTTCCCTGTCTTCATTTATAACAAGTATAGCTACGTACATACTCAACGGATAACATGATTACATGTCCACAGGTGTGCTATCTAATAAAGATTCCCTATAAAAGCTTGTTCCCGCAGAAAAAGAGTGAGCATCTTTAATTTCTCCTCCTTTGCCTGCCTGTCCCCCAACCTGATTAAAAGCATTAGGACGGCTGCAAAGGAGAGAGGGCCATGTATTCCAGGACAGTAAATAGGTGGACTTCCACTAGGAAGAGACAGAGGACATGAGTGTTTCAACTGAAATGGAGAGAGTAGATGGAACTTTTTATAGTTTTACACACATATTAGTTGCTAAGTAATATTTTTTTGCaagtttttcaaaaatgtttataTGTGACAGCTAACAACAATAGACTTAAGTTATTAGAGGGCTTGGTTGGGGTTTAGGGCCTAACATGGCACAGTAGCCTACGTAAatcaattagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
>TU1598749
GCTGCCTGTCAGGCTGGTGATGCTCTCCTCCCCGACGATGGACAGGTTGCCGTTGGAGATCATGGACAGGTTGCTAGGGGAGACGTAGACGGACATGCTGGGGTGTTCTATAAGCAGATCCTCCATGGGGCTGGTCTCGGCCGTGGCTCCCTCTGCGGGCAGGTTGACCAGCATCCATCCTTCCTCATCAGCGTCGGTCACACAGGGGTTGGGCCCCTTGATCTCTGCggccacctcctccacctctccgaAGAACAGGCTGCTCAGAGCTTGGAACATGGCTAGGCCGGTTGGTCGGGTACACGTCAATGGGTAAAAAGTCAAGGGTCAGGGATCGCGGAAGTCAGGTTCTGTGTATAGTTGTAGTTCTCAAGGTATAGCTAGctgcctttgtgtgtgtttgctacTTATTAAGTATTTTTGTTTCTCTTATTTAGTTAGTTATTTCGCTTTTCGCTTTGTCAAACAGTTGCCAGGTCAGGAAAGTGAGCACGGTTTTCTTGGCCTCTCTTTGCTTCAACCCTTTTCTTGTCTTGATCTCGTAGGTTGATTTTCTTACAGGACTCGACAGGCTTCCTTAGTGCAAATGTAAGGTTTTACTTGGTATCG
>TU1598752
GCTGCCTGTCAGGCTGGTGATGCTCTCCTCCCCGACGATGGACAGGTTGCCGTTGGAGATCATGGACAGGTTGCTAGGGGAGACGTAGACGGACATGCTGGGGTGTTCTATAAGCAGATCCTCCATGGGGCTGGTCTCGGCCGTGGCTCCCTCTGCAGTGAAACAGGGGGGAGGGGTAACGAACCAGCTCTCGTCCATGCAGCCTCTCTCCGACCCACTACTGCCAGGGGACACAGATGGGGTGGAGAGCCTGGCCCGCCTTTTTAGGGATATGGGCGTAACGATGCCCGTGGCTAACGGGCTAGCAgaagggagagtggagagggggtCTGATGGCGCCACTGTTGCCGCTCGTGAACAAGCTTTGTGTGTTCTGCGGCGATTCTGATATTGGGGGGGAGGGGTTGGAGATGGGACGGGGCACTCAGTTCTGGTGGGTGTGTCTGGGTGATTTGATTGGTTGTTTTGTGCTTGCGCCTGTGCTATCGATGGcgcctctatccctccctctactaGCATCGCACAATCAGCTTCCCCTGAGAACAGAGTAAAGGTGGGACCATGGAGGAGTTGGCCAATTGAGGTAGGGTGTATGTTTAGGGTGGTGTAGGTTAGGGGGAAAGGTGAAGGCAAAGAGGAAGAAGCCATGCAGGTTGTGGGGTCATTAAAAGGggagcacatgcacacacacacacgcacgcacgcacacacacacacgcacacgcacacgcacacacacacaccagtgtgaGAAATGTCAGGATATTTAAATAAaattggagaggggggagaagaaagggtaaagaaacacaaaacataaaaaTAGGAATAATATAATTAGTTACTTCGACCCTCTAACCGCTTGGTCATGTCAGTGACAGTATTGTTGTACTGACTGTTTTGTGATGTGTTTCATTGGGGCTTACATATTTAGTTTGAGATGTGGCCTCTAAACTATTCAGATTCCCTTTTATGGAGATTTTAAACAATATATTAGCCCCCACACCCCCATCACTATATGGCCACACTAGAGAGGACTGAAGTGCTGACCACAAATCACCAAAACCTTTGACCTTAGAAAACGAACAGCTGATGTACATGCTCAACAGTACCGTCAATATCCTCACTTCTGTCCATTCTGGCATGGCCATATAGTGACTACCATTTCCCTCTCCACTTCCAACCCCTTCCAACTATCCCTAAGGGAGGACTTACCGGGCAGGTTGACCAGCATCCATCCTTCCTCATCAGCGTCGGTCACACAGGGGTTGGGCCCCTTGATCTCTGCggccacctcctccacctctccgaAGAACAGGCTGCTCAGAGCTTGGAACATGGCTAGGCCGGTTGGTCGGGTACACGTCAATGGGTAAAAAGTCAAGGGTCAGGGATCGCGGAAGTCAGGTTCTGTGTATAGTTGTAGTTCTCAAGGTATAGCTAGctgcctttgtgtgtgtttgctacTTATTAAGTATTTTTGTTTCTCTTATTTAGTTAGTTATTTCGCTTTTCGCTTTGTCAAACAGTTGCCAGGTCAGGAAAGTGAGCACGGTTTTCTTGGCCTCTCTTTGCTTCAACCCTTTTCTTGTCTTGATCTCGTAGGTTGATTTTCTTACAGGACTCGACAGGCTTCCTTAGTGCAAATGTAAGGTTTTACTTGGTATCGCTGCAAAGGCCTATGGGGAGACaaaagaaagacaggagagactaTTAATAACAGCAAGAAAATATTTAGATTACAAATCCAAAGACAATGGGAACAAGTGGAGAGGAACATTAGAAAGCAGCacaatcacaa
>TU1598754
GCTGCCTGTCAGGCTGGTGATGCTCTCCTCCCCGACGATGGACAGGTTGCCGTTGGAGATCATGGACAGGTTGCTAGGGGAGACGTAGACGGACATGCTGGGGTGTTCTATAAGCAGATCCTCCATGGGGCTGGTCTCGGCCGTGGCTCCCTCTGCAGTGAAACAGGGGGGAGGGGTAACGAACCAGCTCTCGTCCATGCAGCCTCTCTCCGACCCACTACTGCCAGGGGACACAGATGGGGTGGAGAGCCTGGCCCGCCTTTTTAGGGATATGGGCGTAACGATGCCCGTGGCTAACGGGCTAGCAgaagggagagtggagagggggtCTGATGGCGCCACTGTTGCCGCTCGTGAACAAGCTTTGTGTGTTCTGCGGCGATTCTGATATTGGGGGGGAGGGGTTGGAGATGGGACGGGGCACTCAGTTCTGGTGGGTGTGTCTGGGTGATTTGATTGGTTGTTTTGTGCTTGCGCCTGTGCTATCGATGGcgcctctatccctccctctactaGCATCGCACAATCAGCTTCCCCTGAGAACAGAGTAAAGGTGGGACCATGGAGGAGTTGGCCAATTGAGGTAGGGTGTATGTTTAGGGTGGTGTAGGTTAGGGGGAAAGGTGAAGGCAAAGAGGAAGAAGCCATGCAGGTTGTGGGGTCATTAAAAGGggagcacatgcacacacacacacgcacgcacgcacacacacacacgcacaccagtgtgaGAAATGTCAGGATATTTAAATAAaattggagaggggggagaagaaagggtaaagaaacacaaaacataaaaaTAGGAATAATATAATTAGTTACTTCGACCCTCTAACCGCTTGGTCATGTCAGTGACAGTATTGTTGTACTGACTGTTTTGTGATGTGTTTCATTGGGGCTTACATATTTAGTTTGAGATGTGGCCTCTAAACTATTCAGATTCCCTTTTATGGAGATTTTAAACAATATATTAGCCCCCACACCCCCATCACTATATGGCCACACTAGAGAGGACTGAAGTGCTGACCACAAATCACCAAAACCTTTGACCTTAGAAAACGAACAGCTGATGTACATGCTCAACAGTACCGTCAATATCCTCACTTCTGTCCATTCTGGCATGGCCATATAGTGACTACCATTTCCCTCTCCACTTCCAACCCCTTCCAACTATCCCTAAGGGAGGACTTACCGGGCAGGTTGACCAGCATCCATCCTTCCTCATCAGCGTCGGTCACACAGGGGTTGGGCCCCTTGATCTCTGCggccacctcctccacctctccgaAGAACAGGCTGCTCAGAGCTTGGAACATGGCTAGGCCGGTTGGTCGGGTACACGTCAATGGGTAAAAAGTCAAGGGTCAGGGATCGCGGAAGTCAGGTTCTGTGTATAGTTGTAGTTCTCAAGGTATAGCTAGctgcctttgtgtgtgtttgctacTTATTAAGTATTTTTGTTTCTCTTATTTAGTTAGTTATTTCGCTTTTCGCTTTGTCAAACAGTTGCCAGGTCAGGAAAGTGAGCACGGTTTTCTTGGCCTCTCTTTGCTTCAACCCTTTTCTTGTCTTGATCTCGTAGGTTGATTTTCTTACAGGACTCGACAGGCTTCCTTAGTGCAAATGTAAGGTTTTACTTGGTATCG

Function

NR:

description
tumor protein p53-inducible nuclear protein 2 isoform X1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1598750 False 533 TUCP 0.55 2 64159170 64224615
TU1598747 False 3807 lncRNA 0.40 2 64220388 64244664
TU1598749 False 609 lncRNA 0.51 2 64224773 64226441
TU1598752 False 1801 lncRNA 0.49 2 64224773 64243130
TU1598754 True 1649 TUCP 0.50 2 64224773 64226441

Neighbor

gene id symbol gene type direction distance location
zhx3 zhx3 coding upstream 112591 64095146 ~ 64107797 (+)
mafba LOC106566550 coding upstream 671683 63544939 ~ 63548705 (+)
LOC110492521 LOC106566549 coding upstream 773542 63438599 ~ 63446846 (+)
opn7b LOC106566573 coding upstream 883379 63212313 ~ 63337009 (+)
slc9a8 slc9a8 coding upstream 1181909 63014760 ~ 63038479 (+)
trnaa-ugc-128 NA coding downstream 17560 64262224 ~ 64262295 (+)
snai1b LOC106566562 coding downstream 45225 64289889 ~ 64293767 (+)
trnag-gcc-14 NA coding downstream 115428 64360092 ~ 64360162 (+)
trnag-gcc-15 NA coding downstream 115890 64360554 ~ 64360624 (+)
trnag-gcc-16 NA coding downstream 116661 64361325 ~ 64361395 (+)
G1400073 NA non-coding upstream 10539 64208877 ~ 64209849 (+)
G1400029 NA non-coding upstream 33572 64186360 ~ 64186816 (+)
G1400063 NA non-coding upstream 42809 64177330 ~ 64177579 (+)
G1400015 plcg1 non-coding upstream 106684 64108012 ~ 64113704 (+)
G1400010 NA non-coding upstream 134610 64085524 ~ 64085778 (+)
G1400100 NA non-coding downstream 11073 64255737 ~ 64255991 (+)
G1400101 NA non-coding downstream 12302 64256966 ~ 64257301 (+)
G1400115 NA non-coding downstream 41431 64286095 ~ 64286373 (+)
G1400116 NA non-coding downstream 42236 64286900 ~ 64287121 (+)
G1400129 NA non-coding downstream 67921 64312585 ~ 64312879 (+)
G1400056 top1 other upstream 40933 64166374 ~ 64179455 (+)
G1399694 NA other upstream 534244 63685566 ~ 63686144 (+)
G1399692 NA other upstream 534914 63685096 ~ 63685474 (+)
G1398929 NA other upstream 880582 63338448 ~ 63339806 (+)
LOC110492516 emilin3 other upstream 1271899 62926999 ~ 62951504 (+)
G1400095 NA other downstream 2633 64247297 ~ 64247702 (+)
G1400202 LOC106566541 other downstream 228884 64473548 ~ 64476421 (+)
G1401041 NA other downstream 945326 65189990 ~ 65190275 (+)
G1401074 NA other downstream 1013851 65258515 ~ 65258844 (+)
G1401354 NA other downstream 1651227 65895891 ~ 65897063 (+)
G1399993 NA non-coding upstream 92504 64064254 ~ 64066666 (+)
G1399978 NA non-coding upstream 104994 64053866 ~ 64054176 (+)
G1399976 NA non-coding upstream 107096 64051844 ~ 64052074 (+)
G1398625 NA other upstream 1416633 62742102 ~ 62742537 (+)

Expression


Co-expression Network