G1400202 (LOC106566541)


Basic Information

Item Value
gene id G1400202
gene name LOC106566541
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 64473548 ~ 64476421 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1598933
CTTGCCTGTGCCTTTGACTCCCTTCCAGATGCAGAAGTAAACAATAACCCAGGTGGCGATCAGACAGAGGACCATGTGAGAGCTGATGTCACCAGGCTCATCCAGACCACCAGAGAGACGGAGCACCTTACgcctgacacacTCCCAGAACTCAATGACTGGCGAGCGCATGCCCTCTGGTTCCACGCAGCTGCCGTTGAagaggagcagagtagaggaTGAGAGGTTGAGCGGGGAGGATACCACCGACGAGAGGAGGGAGCTGGGGATAGACGGAtcgggggtggaggagaggagaggcagggtgCTGCGGTTGTGGCAAGCCCGGCGGAAGTTTTCGGTGCAGTTGAGGGTGTTCCAGGGGTGCCCGCAGGTAGCCCAGGGTAACGGGTTGGTGAAGGAGTGAAGCAGGAAGTACAGGCCCCACACCAGGATCATGATGTAGTAGGTGTTACAGAAGAACACTATTACCATGGAGGCCAGGCCAAga
>TU1598940
GCGAGCGCATGCCCTCTGGTTCCACGCAGCTGCCGTTGAagaggagcagagtagaggaTGAGAGGTTGAGCGGGGAGGATACCACCGACGAGAGGAGGGAGCTGGGGATAGACGGAtcgggggtggaggagaggagaggcagggtgCTGCGGTTGTGGCAAGCCCGGCGGAAGTTTTCGGTGCAGTTGAGGGTGTTCCAGGGGTGCCCGCAGGTAGCCCAGGGTAACGGGTTGGTGAAGGAGTGAAGCAGGAAGTACAGGCCCCACACCAGGATCATGATGTAGTAGGTGTTACAGAAGAACACTATTACCATGGAGGCCAGGCCAAgacctgtggagagagagagagggggaatgagaagGAGTGGCAGATGAGGTGATGTACGGTAGAGAACATAAGGACAAACATTTAGAGGAAGGATATATGAGAAAGAAAAATGGACGGGTTagagaacaaaaaaataaaaaacctcACTCAGAAAAATGAATTCCATCTCCATTAAACAACATCTATGAAGATCAGGTTCCAAGATTCTAATACTTTGTGTTTTGTGTGCCAGCACTACTAAGGTACCTCTTTGTACCTCTTTGTATCTCTTTGTGGTACCTATGCTGCCTAGGGGAAGAGCTGTCAGGAAAATAGTTATCTTCACAAGAATTAAATAATGAAATAATGAAATAGATTTGAATTTTATGAAACATTTATTTACCAGGCAGGTCAATTAAGAACAGATGCTTATTTACAATAACCAAGGGCTGTTGAGAATACACACTTTATAaggtttattaggtacacccatcagGTACTGGATCAGACCCCACTTTgactccagaacagcctgaattatttgaGGAATGGAAACGTTGCTTAATTGGTTTCAAGGGACCtaatgtgtgccaggaaaacattccccacaccattacccCACCTCCACCAGCCTGTACAGTTGActccaggcaggatggggccatggactcatgctgcttatgccaaatctTTAACATGCATGATgcaacaggaactgggattcGTTGGACCAGGTGATGTTTTTCTACTTCTCAactgtccagtgttggtgatcacgtgcccactggagctgcttcttgtttttagctgataggagcagaagccggtgtggtcgtctgctgcaatagtccATGCGTGACAAGGACagacaccactgttgtactgcgccattATTTGCCGGTTTGTGGCCCACCTGTTAGCTTgcatgattcttgccattctcctttgatTTCTcgtcaacaagctgttttcgcccacaggactgccgctgacgggatgttttctgtttatcgcaccattctctgtaaaccctagacactgtcgtgtgtgaaaagcccaggaggctggatgtttctgagatactggaaccaaCGTGCACGGCACTGACAATCATACCACtgtgtttctgagatactgggaCCAACGTGCACGGCACTGACAATCATACCACAGTGTTTCTGAGGTACTGGGACCAACGTGCACAACACTGACAATCATACCACAGTGTTTCTGAGATACTAGAACCAACGTGCACGGCACTGACAATCATAACACACTCAAAGTCGCTTAGATCACTTGTTTTGCCAATTCTAATGtccaatcaaacagtaactgaatgtctcGATTTCTGCTTTATAAAGAAAGCCACAGCCACGTGACTTACTGTCTGGAAGAGAGAACCATTTTCATGAAcgtggtggtgtacctaataaactggccactgagtgtaggTTGGAAGTTGATGACGATGCTATGATGTGACAGAGGAGCTGGACTGCAAGTTACAACAGAATCAACATATTCACAACAGCTCTTATGTCAAAATTTCATCAATCAAGTCTTGTTGCGAGAAGACTGTTTATTCTGACAGTTGTTTCAGTTACATAATGCCAACATCTATGCCGAAATTGGTGGTTTGAACAACCAAATGCTAGCCTATATTATAGGGGGGGCGAAAGAAAGGATGTGTGAGACAGAGGGGTTGCAGAATAAAACAAGACAAAACCTACCTCAGAAACATGTATTCACTCTTCATTAATGCATTCACATTACAGTACCTTTAAAGAGAGGGGCAATGTTCCATGCAGAGACCCCTCCTTGCTTCATGAACTGACCAAGAGCGATTTCCAGGAAGAACACGGGAATACCTCCGATGAACACAATAATCATGTAGGGGATCAGGAACACGCCTACAACACGCAACACACACATGTTAGCAACACAACTCCACACGCTACACAACACAGAGGCTATATTTCACaaacatacaacacaacacaaactctATTATGTGACAAATCTATCAAATACAGTCCTAGTGCATGCTTGTAT

Function

NR:

description
PREDICTED: uncharacterized protein LOC103376870

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1598933 False 490 TUCP 0.58 2 64473548 64474288
TU1598940 True 2358 lncRNA 0.45 2 64473960 64476421

Neighbor

gene id symbol gene type direction distance location
LOC110492539 LOC106566566 coding upstream 41296 64407997 ~ 64432664 (+)
trnag-gcc-17 NA coding upstream 107155 64366735 ~ 64366805 (+)
trnag-gcc-16 NA coding upstream 112565 64361325 ~ 64361395 (+)
trnag-gcc-15 NA coding upstream 113336 64360554 ~ 64360624 (+)
trnag-gcc-14 NA coding upstream 113798 64360092 ~ 64360162 (+)
LOC110492542 LOC106566540 coding downstream 29886 64506307 ~ 64510776 (+)
LOC110519666 LOC108235233 coding downstream 40730 64517151 ~ 64622468 (+)
LOC100136613 LOC106566534 coding downstream 154022 64630443 ~ 64645181 (+)
LOC110492553 LOC106566530 coding downstream 194347 64670768 ~ 64673832 (+)
cacna2d3a LOC102307471 coding downstream 246121 64722542 ~ 65037527 (+)
G1400190 NA non-coding upstream 21295 64451499 ~ 64452665 (+)
G1400184 NA non-coding upstream 30389 64436147 ~ 64443571 (+)
G1400178 NA non-coding upstream 72540 64401056 ~ 64401420 (+)
G1400129 NA non-coding upstream 161081 64312585 ~ 64312879 (+)
G1400116 NA non-coding upstream 186839 64286900 ~ 64287121 (+)
G1400213 LOC106566539 non-coding downstream 36334 64512755 ~ 64513502 (+)
G1400234 NA non-coding downstream 73798 64550219 ~ 64551448 (+)
G1400246 NA non-coding downstream 89112 64565533 ~ 64571054 (+)
G1400249 NA non-coding downstream 93508 64569929 ~ 64574777 (+)
G1400256 NA non-coding downstream 117435 64593856 ~ 64594524 (+)
G1400095 NA other upstream 226258 64247297 ~ 64247702 (+)
G1400047 NA other upstream 247519 64159170 ~ 64244664 (+)
G1400056 top1 other upstream 294505 64166374 ~ 64179455 (+)
G1399694 NA other upstream 787816 63685566 ~ 63686144 (+)
G1399692 NA other upstream 788486 63685096 ~ 63685474 (+)
G1401041 NA other downstream 713569 65189990 ~ 65190275 (+)
G1401074 NA other downstream 782094 65258515 ~ 65258844 (+)
G1401354 NA other downstream 1419470 65895891 ~ 65897063 (+)
G1401782 NA other downstream 1542580 66019001 ~ 66024245 (+)
G1402066 NA other downstream 2066890 66543311 ~ 66543685 (+)

Expression


Co-expression Network