G1400619


Basic Information

Item Value
gene id G1400619
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 64486869 ~ 64488384 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1599438
GATGTCGCCCAATGTCAACAAGTAGATGCGATCAAATCCATTCAAAACGGAATTGCTTTCCTGTGTCAATGCTACTGGTTTTGAGCACTTTGGGACGGCTTTAGTTGGCGTGTTGCATCTCTTATTAGAAAGTATTAAACATAGAGGTAATACAAATAGCCAAAATAACGGTCATATGCCAGGAATAAGACAAAGTGTAGCTAAATGAAGACATAAATGTATTAGGTGTTTGCGTTCTTATGCCATCAAACAAACAGGCGCAAACGAAAACATTTAAACTCTAAATTATGTTGCCCTCAAATACCCGGATAAGTACAGGAAGGCACGAATGAATGGATTGTTAGTACACACAACATGGACTGGCCCGTCCTCTCCAACCCCCTAAACTAAACATATTAAGAACCTCCTCATAAAGGCCTACGTGCCAAACGTGACTGCTGTACGTGAGATTGACAGTATGGCTACTGTAGCACAGTGTAGGCTGATCTGGAAAGAGGCTATGTGCGTGTATTGGTTTGTTTGTTGATGGCCACGGGCATCATGCTGTATAGGACCAACAGACACAATACAGAGACGCAGGTTCCCCAGCGTACAAACTAGGCCTGGATACTAATATATTAGTACTAGGCATTGCTTTTCTGTAATTAGGTTAATTGCGTCATTTTATTATATGGTACTAAAGTGAATGTTTGTAGGCTAGAGCCGCTAGAGTTGCTGTGCGTCACGAGATTGACCTTGCAAAAAAGATGTACTCTTATTCATTCACAAATTGAATGTGATTGTGTTTTGTGGACAATTAGAAATAGAATATGACATGTGCTGTTATCTATCCAGCCCAATTTGCTGCCAGCTAGGCTGTCTGACACTGAGATTTTACTGTGCGGGGTCAGTGGCGTACTTTTTCGCGCACCCCAAGGTCCGAGCAAGCCAGCTCCCCCCAACCAAAAATaataatcatatttttttttacaaaaacattAAAATTTTTTGTTTGTAAAAAAACTAACTTCCTGCAAttgacacattttgccatagggcaAAGACAAAAATGTGTAGTTGTATAGCTATTGTCATGCATTTACATAcatgccatggggcagagagatttTTTATtaatagctaatctcatgctattctacacattttgccatgaggctgatagatcattttgcagttttaaatcaAATTTCCTGCTAGTCTACATATTTTACCATGATTCTGAGTGAAAATTTGTTCAGTTTGAatgctaatttcctgtaattgtATAGATTTCCATGTTTTATTACATGCTACCATGCTATCTGGGGCCTAACATGCTATCTGGGGTCTGACATGCTATCTGGGGCCTGACATGCTATCTGGGGCCTGACATGCTATCTATCTGGGGCCTGATGTGCCAAATTGGGAGACTGGAGTGGGTTTTCTCACGGGTTGATTATCACAGTGCTAATTATTCCCAATCTAAATGGCGCTGTGTAATATTTTTAAGGTTCAAATGTGTGAATTATTTTAAAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1599438 True 1516 lncRNA 0.40 1 64486869 64488384

Neighbor

gene id symbol gene type direction distance location
si:ch211-117c9.5 LOC106566567 coding downstream 1231 64445355 ~ 64485638 (-)
LOC110492537 LOC106566565 coding downstream 89460 64391628 ~ 64397409 (-)
LOC110492536 LOC106566564 coding downstream 95531 64348245 ~ 64391338 (-)
LOC110492535 samhd1 coding downstream 144594 64316220 ~ 64342275 (-)
LOC110492532 tp53inp2 coding downstream 250370 64220384 ~ 64244660 (-)
LOC110492541 LOC106566539 coding upstream 2999 64491383 ~ 64514012 (-)
parapinopsina LOC100135831 coding upstream 157017 64645401 ~ 64650567 (-)
LOC110492546 NA coding upstream 165406 64653790 ~ 64666518 (-)
LOC110492543 LOC106566530 coding upstream 178340 64666724 ~ 64673620 (-)
LOC110492544 NA coding upstream 194234 64682618 ~ 64688581 (-)
G1400676 NA non-coding downstream 4359 64481856 ~ 64482510 (-)
G1400670 NA non-coding downstream 17369 64469061 ~ 64469500 (-)
G1400655 NA non-coding downstream 36674 64449402 ~ 64450195 (-)
G1400652 NA non-coding downstream 56078 64429710 ~ 64430791 (-)
G1400639 NA non-coding downstream 82871 64403701 ~ 64403998 (-)
G1400699 NA non-coding upstream 51368 64539752 ~ 64540851 (-)
G1400714 NA non-coding upstream 76461 64564845 ~ 64567234 (-)
G1400715 NA non-coding upstream 78121 64566505 ~ 64571927 (-)
G1400730 NA non-coding upstream 110569 64598953 ~ 64599608 (-)
G1400721 NA non-coding upstream 154921 64643305 ~ 64691411 (-)
G1400578 NA other downstream 176413 64309883 ~ 64310456 (-)
G1400565 LOC106575828 other downstream 200876 64285628 ~ 64285993 (-)
G1400564 LOC106597321 other downstream 202322 64284207 ~ 64284547 (-)
G1400552 NA other downstream 229436 64256926 ~ 64257433 (-)
G1401617 NA other upstream 1147098 65635482 ~ 65636372 (-)
LOC110492562 LOC106568106 other upstream 1232123 65715711 ~ 65754610 (-)
G1402686 srpk3 other upstream 1937167 66425551 ~ 66426322 (-)
G1402707 LOC106566505 other upstream 1996517 66484901 ~ 66494667 (-)
G1403498 NA other upstream 2955037 67443421 ~ 67444179 (-)

Expression


Co-expression Network