G1400721


Basic Information

Item Value
gene id G1400721
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 64643305 ~ 64691411 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1599570
tattaacttaagggggctgaaCGCGTTGCCAACGTTGGTGATGATGTGACTGTGGACCAGGTTGGTGTCTGCCTGGAAGGGCCCGGTGTTGCCGTAGCCCTCATTGTCCTGGATACTAGGTCGCAGGGCAGCTGAGAAGGCCACATCTACAACAGTTGCATGACTTTCTCAAGTCCTCAACCTCCCTCCTCAGGTTCCCCACCTCGGCAGACAGGCCAGAGAAAAGGGTAATGAAAGGGTCACGGCTGTAATCAGAGATGGATTGCTTGTTGGTGGAATCATCTGCCTGTCCATAAGACAGACAAATGATCACAATCAGCTGGAGAGGAAGCAtcgtcttcttcgtcttcttcatCATTGTCTTCATCTGGACCTGCAAGAGTCTGTGGAGTTGGGTAGTTCCAAGGACTTGTTTATAAAGGGTGAGGTCATGTGACCAAAGTAAAGGACTTATTAGGAATTACATGTTGAGTGTGGAAAttagaaatacattttaactgGGACTATTCCTGCCCTCTGTACAAACACATTTGTTGGAC
>TU1599571
ATTGCTGTTTTTAACATTGCTTTTATTGCCTCACACACATGTAAATGACAGCAAAAGAGATTATAATGTGTGGAAGTTAAGTGGAGAACCCTCCCAACCTACACCCTGACCCCCTCAGTCTCTCAGACGTTTTCTCCTTCAACCTGGAAGAGAAGGAAGCCACTGAAGGTGCTAAGGTTTTTGAAAGCATTACTGGTCACCTGGAAACTAGACGGTAGGACCAGGTAAACGATGTCTCCTTTGGCCAGCTGCAGGGTGGCCCCGTTGGACGCAAAGTCTTCATTGTCCCCCTTGTCCTGAAACTCATAGACCAGAGCTACCTGCTCTTGGTTCTTGTAAAGGGCCACACCGATGCTGGCCTCCTTTTTCCAGGCATAGGAGGTGAAAGTGAAGTAGTAGACTCCATGTACTGGTGCTGTGAATGCTCCTGTATGTGTCGACAAGGAACTTCATGAGAATTTCTGATTTATAAAGCATTATTAAACTATTTATAACGACAAGTTATCCTACTCTAAAGGTCCCGCTTTATTAGTAGTGTATCTTTATGAATCCTTATAGAGCATGAAATACAGTTATACATGATTTGTTACCCATTGATATGTAGTTCTTATAAAGCCAATATGTTATCTGGGAATGTTTCAGCCAGACAAAGCAAGAATTATATGGAAAAATTTGGATGCAGTGGGAGTTGTCTATGTAAATCGTAATAATATTTCAATGGCTGACCTGTCCGGGGGCTGAACGCGTTGCCAACGTTGGTGATGATGTGACTGTGGACCAGGTTGGTGTCTGCCTGGAAGGGCCCGGTGTTGCCGTAGCCCTCATTGTCCTGGATACTAGGTCGCAGGGCAGCTGAGAAGGCCACATCTACAGCTTGCATGACTTTCTCAAGTCCTCAACCTCCCTCCTCAGGTTCCCCACCTCGGCAGACAGGCCAGAGAAAAGGGTAATGAAAGGGTCACGGCTGTAATCAGAGATGGATTGCTTGTTGGTGGAATCATCTGCCTGTCCATAAGACAGACAAATGATCACAATCAGCTGGAGAGGAAGCAtcgtcttcttcgtcttcttcatCATTGTCTTCATCTGGACCTGCAAGAGTCTGTGGAGTTGGGTAGTTCCAAGGACTTGTTTATAAAGGGTGAGGTCATGTGACCAAAGTAAAGGACTTATTAGGAATTACATGTTGAGTGTGGAAAttagaaatacattttaactgGGACTATTCCTGCCCTCTGTACAAACACATTTGTTGGAC
>TU1599561
ATTGCTGTTTTTAACATTGCTTTTATTGCCTCACACACATGTAAATGACAGCAAAAGAGATTATAATGTGTGGAAGTTAAGTGGAGAACCCTCCCAACCTACACCCTGACCCCCTCAGTCTCTCAGACGTTTTCTCCTTCAACCTGGAAGAGAAGGAAGCCACTGAAGGTGCTAAGGTTTTTGAAAGCATTACTGGTCACCTGGAAACTAGACGGTAGGACCAGGTAAACGATGTCTCCTTTGGCCAGCTGCAGGGTGGCCCCGTTGGACGCAAAGTCTTCATTGTCCCCCTTGTCCTGAAACTCATAGACCAGAGCTACCTGCTCTTGGTTCTTGTAAAGGGCCACACCGATGCTGGCCTCCTTTTTCCAGGCATAGGAGGTGAAAGTGAAGTAGTAGACTCCATGTACTGGTGCTGTGAATGCTCCTGTATGTGTCGACAAGGAACTTCATGAGAATTTCTGATTTATAAAGCATTATTAAACTATTTATAACGACAAGTTATCCTACTCTAAAGGTCCCGCTTTATTAGTAGTGTATCTTTATGAATCCTTATAGAGCATGAAATACAGTTATACATGATTTGTTACCCATTGATATGTAGTTCTTATAAAGCCAATATGTTATCTGGGAATGTTTCAGCCAGACAAAGCAAGAATTATATGGAAAAATTTGGATGCAGTGGGAGTTGTCTATGTAAATCGTAATAATATTTCAATGGCTGACCTGTCCGGGGGCTGAACGCGTTGCCAACGTTGGTGATGATGTGACTGTGGACCAGGTTGGTGTCTGCCTGGAAGGGCCCGGTGTTGCCGTAGCCCTCATTGTCCTGGATACTAGGTCGCAGGGCAGCTGAGAAGGCCACATCTACAGGTTGCATGACTTTCTCAAGTCCTCAACCTCCCTCCTCAGGTTCCCCACCTCGGCAGACAGGCCAGAGAAAAGGGTAATGAAAGGGTCACGGCTGTAATCAGAGATGGATTGCTTGTTGGTGGAATCATCTGCCTGTCCATAAGACAGACAAATGATCACAATCAGCTGGAGAGGAAGCAtcgtcttcttcgtcttcttcatCATTGTCTTCATCTGGACCTGCAAGAGTCTGTGGAGTTGGGTAGTTCCAAGGACTTGTTTATAAAGGGTGAGGTCATGTGACCAAAG
>TU1599566
ATTGCTGTTTTTAACATTGCTTTTATTGCCTCACACACATGTAAATGACAGCAAAAGAGATTATAATGTGTGGAAGTTAAGTGGAGAACCCTCCCAACCTACACCCTGACCCCCTCAGTCTCTCAGACGTTTTCTCCTTCAACCTGGAAGAGAAGGAAGCCACTGAAGGTGCTAAGGTTTTTGAAAGCATTACTGGTCACCTGGAAACTAGACGGTAGGACCAGGTAAACGATGTCTCCTTTGGCCAGCTGCAGGGTGGCCCCGTTGGACGCAAAGTCTTCATTGTCCCCCTTGTCCTGAAACTCATAGACCAGAGCTACCTGCTCTTGGTTCTTGTAAAGGGCCACACCGATGCTGGCCTCCTTTTTCCAGGCATAGGAGGTGAAAGTGAAGTAGTAGACTCCATGTACTGGTGCTGTGAATGCTCCTGTCGGGGGCTGAACGCGTTGCCAACGTTGGTGATGATGTGACTGTGGACCAGGTTGGTGTCTGCCTGGAAGGGCCCGGTGTTGCCGTAGCCCTCATTGTCCTGGATACTAGGTCGCAGGGCAGCTGAGAAGGCCACATCTACAGGTTGCATGACTTTCTCAAGTCCTCAACCTCCCTCCTCAGGTTCCCCACCTCGGCAGACAGGCCAGAGAAAAGGGTAATGAAAGGGTCACGGCTGTAATCAGAGATGGATTGCTTGTTGGTGGAATCATCTGCCTGTCCATAAGACAGACAAATGATCACAATCAGCTGGAGAGGAAGCAtcgtcttcttcgtcttcttcatCATTGTCTTCATCTGGACCTGCAAGAGTCTGTGGAGTTGGGTAGTTCCAAGGACTTGTTTATAAAGGGTGAGGTCATGTGACCAAAG
>TU1599567
ATTGCTGTTTTTAACATTGCTTTTATTGCCTCACACACATGTAAATGACAGCAAAAGAGATTATAATGTGTGGAAGTTAAGTGGAGAACCCTCCCAACCTACACCCTGACCCCCTCAGTCTCTCAGACGTTTTCTCCTTCAACCTGGAAGAGAAGGAAGCCACTGAAGGTGCTAAGGTTTTTGAAAGCATTACTGGTCACCTGGAAACTAGACGGTAGGACCAGGTAAACGATGTCTCCTTTGGCCAGCTGCAGGGTGGCCCCGTTGGACGCAAAGTCTTCATTGTCCCCCTTGTCCTGAAACTCATAGACCAGAGCTACCTGCTCTTGGTTCTTGTAAAGGGCCACACCGATGCTGGCCTCCTTTTTCCAGGCATAGGAGGTGAAAGTGAAGTAGTAGACTCCATGTACTGGTGCTGTGAATGCTCCTGTCGGGGGCTGAACGCGTTGCCAACGTTGGTGAGTTGCATGACTTTCTCAAGTCCTCAACCTCCCTCCTCAGGTTCCCCACCTCGGCAGACAGGCCAGAGAAAAGGGTAATGAAAGGGTCACGGCTGTAATCAGAGATGGATTGCTTGTTGGTGGAATCATCTGCCTGTCCATAAGACAGACAAATGATCACAATCAGCTGGAGAGGAAGCAtcgtcttcttcgtcttcttcatCATTGTCTTCATCTGGACCTGCAAGAGTCTGTGGAGTTGGGTAGTTCCAAGGACTTGTTTATAAAGGGTGAGGTCATGTGACCAAAG
>TU1599562
ATTGCTGTTTTTAACATTGCTTTTATTGCCTCACACACATGTAAATGACAGCAAAAGAGATTATAATGTGTGGAAGTTAAGTGGAGAACCCTCCCAACCTACACCCTGACCCCCTCAGTCTCTCAGACGTTTTCTCCTTCAACCTGGAAGAGAAGGAAGCCACTGAAGGTGCTAAGGTTTTTGAAAGCATTACTGGTCACCTGGAAACTAGACGGTAGGACCAGGTAAACGATGTCTCCTTTGGCCAGCTGCAGGGTGGCCCCGTTGGACGCAAAGTCTTCATTGTCCCCCTTGTCCTGAAACTCATAGACCAGAGCTACCTGCTCTTGGTTCTTGTAAAGGGCCACACCGATGCTGGCCTCCTTTTTCCAGGCATAGGAGGTGAAAGTGAAGTAGTAGACTCCATGTACTGGTGCTGTGAATGCTCCTGTCCGGGGGCTGAACGCGTTGCCAACGTTGGTGATGATGTGACTGTGGACCAGGTTGGTGTCTGCCTGGAAGGGCCCGGTGTTGCCGTAGCCCTCATTGTCCTGGATACTAGGTCGCAGGGCAGCTGAGAAGGCCACATCTACAGAGTTGCATGACTTTCTCAAGTCCTCAACCTCCCTCCTCAGGTTCCCCACCTCGGCAGACAGGCCAGAGAAAAGGGTAATGAAAGGGTCACGGCTGTAATCAGAGATGGATTGCTTGTTGGTGGAATCATCTGCCTGTCCATAAGACAGACAAATGATCACAATCAGCTGGAGAGGAAGCAtcgtcttcttcgtcttcttcatCATTGTCTTCATCTGGACCTGCA

Function

NR:

description
complement C1q tumor necrosis factor-related protein 3

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1599570 False 539 lncRNA 0.48 3 64643305 64691411
TU1599571 False 1258 lncRNA 0.45 2 64643305 64645186
TU1599561 False 1161 lncRNA 0.45 2 64643402 64645186
TU1599566 False 861 lncRNA 0.50 3 64643402 64645186
TU1599567 False 750 lncRNA 0.49 3 64643402 64645186
TU1599562 True 799 lncRNA 0.50 3 64643466 64645186

Neighbor

gene id symbol gene type direction distance location
LOC110492541 LOC106566539 coding downstream 129293 64491383 ~ 64514012 (-)
si:ch211-117c9.5 LOC106566567 coding downstream 157667 64445355 ~ 64485638 (-)
LOC110492537 LOC106566565 coding downstream 245896 64391628 ~ 64397409 (-)
LOC110492536 LOC106566564 coding downstream 251967 64348245 ~ 64391338 (-)
LOC110492535 samhd1 coding downstream 301030 64316220 ~ 64342275 (-)
LOC110492545 lrtm1 coding upstream 292851 64984262 ~ 64991471 (-)
wnt5a LOC106566524 coding upstream 403378 65094789 ~ 65129767 (-)
LOC110518541 LOC106566519 coding upstream 440239 65131650 ~ 65620292 (-)
tlr9 tlr9 coding upstream 931764 65623175 ~ 65628493 (-)
apeh apeh coding upstream 941719 65633130 ~ 65644141 (-)
G1400730 NA non-coding downstream 43697 64598953 ~ 64599608 (-)
G1400715 NA non-coding downstream 71378 64566505 ~ 64571927 (-)
G1400714 NA non-coding downstream 76071 64564845 ~ 64567234 (-)
G1400699 NA non-coding downstream 102454 64539752 ~ 64540851 (-)
G1400619 NA non-coding downstream 154921 64486869 ~ 64488384 (-)
G1400851 NA non-coding upstream 162772 64854183 ~ 64854726 (-)
G1400867 NA non-coding upstream 194117 64885528 ~ 64886033 (-)
G1400877 NA non-coding upstream 215485 64906896 ~ 64907557 (-)
G1400904 NA non-coding upstream 263187 64954598 ~ 64955910 (-)
G1400907 NA non-coding upstream 275215 64966626 ~ 64972606 (-)
G1400578 NA other downstream 332849 64309883 ~ 64310456 (-)
G1400565 LOC106575828 other downstream 357312 64285628 ~ 64285993 (-)
G1400564 LOC106597321 other downstream 358758 64284207 ~ 64284547 (-)
G1400552 NA other downstream 385872 64256926 ~ 64257433 (-)
G1401617 NA other upstream 944071 65635482 ~ 65636372 (-)
LOC110492562 LOC106568106 other upstream 1029096 65715711 ~ 65754610 (-)
G1402686 srpk3 other upstream 1734140 66425551 ~ 66426322 (-)
G1402707 LOC106566505 other upstream 1793490 66484901 ~ 66494667 (-)
G1403498 NA other upstream 2752010 67443421 ~ 67444179 (-)

Expression


Co-expression Network