G1400308


Basic Information

Item Value
gene id G1400308
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 64701037 ~ 64705227 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1599076
GAATACATGGAACAGTATAAAACACATCAAACATGGAAACTACATGTTTGACTGCGTTCCAAACGTCCATTCCAGCCATAataatgagcccatcctcctaaagctcctcccaccagcttccACTGACAGGCACCAATGtgatagcagctgggtctggtctgcttagttcattgactgtatatGAACCGAAAAAATGTGGGAGTGGGatgtctcgcttcctcttccatctctgatAGTACCAACATTTTCCCCCAATAAAGTAGCTAGTGCCCTGCAACAACAGAGCTGAATATAATCTGGTAgtgccctaacaacaacatagtgaACCTCTCCTATCTGAATATAATCTGGTAGTGCCCTAACAACATAGCTGAATATAATCTGGTAGTGCCCTAACAataacatagtgaacctctcCTATCTGAATATAATCTTGTAGTGCCCTAACAACATAGCTGAATATAATCTGGTAgtgccctaacaacaacatagtgaACCTCTCCTATCTGAATATAATCTGGTAgtgccctaacaacaacatagtgaACCTCTCCTATCTGAATATAATCTGGTAGTGATCTGCAACAACATAGTGAACCTCTCCTATCTGAATATAATCTGGTAGTGCCCTAACAACATAGCtgaatataacctggtagtgccCTGCAACAACATAGCtgaatataacctggtagtgatCTGCAACAACATAGTGAACCTCTCCTAGCTGAATATAATCTGGTAGTGCCCTAACAACATATCtgaatataacctggtagtgatCTGCAACAACATAGTGAACCTCTCCTAGCtgaatataacctggtagtgccctaacaacaacatagtgaACCTCTCCTATCTGAATATAATCTGGTAgtgccctaacaacaacatagctgAATATAATCTGGTAgtgccctaacaacaacatagctgAATATAATCTGGTAgtgccctaacaacaacatagctgAATATAATCTGGTAgtgccctaacaacaacatagctgaatataacctggtagtgatCTGCAACAACAGAGCtgaatataacctggtagtgatCTGCAACAACAGAGTtgaatataacctggtagtgccCTAACAACAACATTGCTGAATATAATCTGGTAGTGCCCTAACAACAACAGAGCtgaatataacctggtagtgatCTGCAACAACAGAGCTGAATACAACCTGGTAGTGCCCTGCAACAACATAGCtgaatataacctggtagtgatCTGCAACAACAGAGCTGAATACAACCTGGTAGTGATCTGCAACAACAGagctgAATATAATCTGGTAgtgccctaacaacaacatagtgaACCTCTCCTATCTGAATATAATCTGGTAgtgccctaacaacaacatagctgAATATAATCTGGTAgtgccctaacaacaacatagctgAATATAATCTGGTAgtgccctaacaacaacatagtgaACCTCTCCTATCTGAATATAATCTGGTAGTGCCCTGCAACAACATAGTGAACCTCTCCTATCtgaatataacctggtagtgccctaacaacaacatagtgaACCTCTCCTATCTGAATATAATCTGGTAgtgccctaacaacaacatagtgaACCTCTCCTATTTGAATATAATCTGGTAgtgccctaacaacaacatagctgAATATAATCTGGTAGttccctaacaacaacatagtgaACCTCTCCTATCTGAATATAATCTGGTAGTGCCCTGCAACAACATAGTGAACCTCTCCTATCtgaatataacctggtagtgccctaacaacaacatagtgaACCTCTCCTATCTGAATATAATCTGGTAgtgccctaacaacaacatagtgaACCTCTCCTATCTGAATATAATCTGGTAgtgccctaacaacaacatagctgAATATAATCTGGTAgtgccctaacaacaacatagtgaACCTCTCCTATCTGAATATAATCTGGTAGTGCCCTGCAACAACATAGTGAACCTCTCCTATCTGAATATAATCTGGTAgtgccctaacaacaacatagctgAATATAATCTGGTAgtgccctaacaacaacatagctgaatataacctggtagtgccctaacaacaacatagtgaACCTCTCCTATCTGAATATAATCTGGTAgtgccctaacaacaacatagtgaACCTCTCCTATCTGAATATAATCTGGTAGTGCCCTGCAACAACATAGTGAACCTCTCCTATCTGAATATAATCTGGTAgtgccctaacaacaacatagctgAATATAATCTGGTAgtgccctaacaacaacatactGAACCTCTCCTATCTGAATATAATCGGGTAgtgccctaacaacaacatagctgaatataacctggtagtgccctaacaacaacatagctgAATATAACCTAGTAGTGCCCTAACAATAACATAGCTGAATATAATCTGCTAGTGATCTGCAACAACATAGCTGAATATAATCTGCTAGTGATCTGCAACAACATAGCTGAATATAATCTGGTAgtgccctaacaacaacatagctgAATATAATCTGGTAGTGCCCTAACAACATAGCtaaatataacctggtagtgccCTAACAACATAGCtgaatataacctggtagtgctCTGCAACAACATAGCTGAATATAATCTGGTAGTGATCTGCAACAACATAGCTGAATATAATCTGGTAGTGCTCTGCAACAACATAGCTGAATATAATCTGGTAGTGCTCTGCAACAACATAGTGAACCTCTCCTAGAATGATGAGCACAGGCATCCTAAAAGGAATTACCCTAATTTAGCATAAACCATTCAAACCAGTAAACAGGTATATTCACTATATGAACAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1599076 True 2856 lncRNA 0.40 2 64701037 64705227

Neighbor

gene id symbol gene type direction distance location
LOC110492553 LOC106566530 coding upstream 27205 64670768 ~ 64673832 (+)
LOC100136613 LOC106566534 coding upstream 55856 64630443 ~ 64645181 (+)
LOC110519666 LOC108235233 coding upstream 78569 64517151 ~ 64622468 (+)
LOC110492542 LOC106566540 coding upstream 190261 64506307 ~ 64510776 (+)
LOC110492539 LOC106566566 coding upstream 268373 64407997 ~ 64432664 (+)
cacna2d3a LOC102307471 coding downstream 17315 64722542 ~ 65037527 (+)
capza1b capza1 coding downstream 943129 65648356 ~ 65653937 (+)
LOC110492564 LOC102303593 coding downstream 1290800 65996027 ~ 66267216 (+)
srpk3 srpk3 coding downstream 1718662 66423889 ~ 66434911 (+)
comta LOC106566505 coding downstream 1772050 66477277 ~ 66494685 (+)
G1400267 NA non-coding upstream 83239 64617338 ~ 64617798 (+)
G1400220 NA non-coding upstream 91275 64609403 ~ 64609762 (+)
G1400256 NA non-coding upstream 106513 64593856 ~ 64594524 (+)
G1400249 NA non-coding upstream 126260 64569929 ~ 64574777 (+)
G1400334 NA non-coding downstream 54691 64759918 ~ 64764466 (+)
G1400371 NA non-coding downstream 149119 64854346 ~ 64855623 (+)
G1400406 NA non-coding downstream 195385 64900612 ~ 64901548 (+)
G1400427 NA non-coding downstream 229296 64934523 ~ 64935761 (+)
G1400435 NA non-coding downstream 245225 64950452 ~ 64985600 (+)
G1400202 LOC106566541 other upstream 226749 64473548 ~ 64476421 (+)
G1400095 NA other upstream 453335 64247297 ~ 64247702 (+)
G1400047 NA other upstream 474596 64159170 ~ 64244664 (+)
G1400056 top1 other upstream 521582 64166374 ~ 64179455 (+)
G1399694 NA other upstream 1014893 63685566 ~ 63686144 (+)
G1401041 NA other downstream 484763 65189990 ~ 65190275 (+)
G1401074 NA other downstream 553288 65258515 ~ 65258844 (+)
G1401354 NA other downstream 1190664 65895891 ~ 65897063 (+)
G1401782 NA other downstream 1313774 66019001 ~ 66024245 (+)
G1402066 NA other downstream 1838084 66543311 ~ 66543685 (+)

Expression


Co-expression Network