XLOC_032992


Basic Information

Item Value
gene id XLOC_032992
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 37342328 ~ 37344594 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065195
ttccccctcagtccaaagacatgtggtaaaggttaGTTGGGCAAGCTAacttgcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgtgcgtgtgtgtgtgcgcgtgtacgtgtatgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtctgaaAGAGTGTGTATAGGTTGGtgtatgggttgtggctggaagggcattcgctgtgtaaaacatatgctggataagttgggcaACACCATGTGCtagaaaattaataaacaagatataatataatagcaGTATCTAACAATCAATAACAGTTTAATTAATTAGAAATGTTGTATCTTTCAGTAATGTACAAGACTGTAAAACCTAACAGTGAAAATCACTAAATGAAATAAGTTAGTTTAACTTATAATTAAAAAAGGTACTTtaactcaaaaagaaaaaaagaaaaaaaaagaattatggtAACTCATAAACTGATTACATTAAGCAGAACTCAAATCAAATGAGTTATGATTGAATTTATAATATCTTTGTGTTAACTCTAATGCTAGAAGGAATACCAAATCATTTAAGTAGCTTAGTTGTTTGgacttaatttgtttaagttaatCAAACGAATAGGCATTTGATAACTGAAGTTACTAATACTCTTAAAGTTTGATGATATAAACACATATGGTTTTAGGATGTTTTTACTAAAGTTAAATTATAGTAAAGCCATACTAAAACTATGGTAGTACGAtagtaaaaccatagtaaaaccatggtaaaaCAATACTAAAACCATGGTAAAACGATAGTAAAATGAtagtaaaaccatagtaaaacTATGGTAAAACCATAGTAAAACCACAGTTTTACTATAgttttactatggttttactatagtttactaTAGTGAACTTTTTGTCTCAAAATTTAAATGGGTTGctgcaatcgatttcctcaaacagtttgagttaacttattgggttttatggTGTAGTACCTAAAAAACAAGCTCTAGTAATTAATAATTAAGTTAGTATTGAATAACAAACACTAGCAGCTAAAAATTAGCATCAAACTATTAGCATGAAAATTGATACCATGGTTTTTAGATCACATGTTAAAGCGGCTTGCCATAAAATGTATCATTCTCTGTTTGTTCCAGACCAGACAAACCAAGTGAACCATACTTCAAGTGTGAACACGCGCCTTGATGCAATAGGCATCATTTAAGGTTAGGTGAACAACTGTCTGTTGCCTGTCAGATAAAATACCCAGTCAAGGTCTGTGAGGCCATGAGGTTAATGTCTCTGGATGGTGTTTCGGTCACAGGTCCTGCATGACAGCTACTTGGCCGGTGTCTGCGGTTAGTGAGCGAGAACGAGCTGCGGATGAACCCAAGAGCAATGTGACACCCGGGGACCATCTCACTGTGGTCACATGTCCGGAAAGCTCAGACAAAATGGGTTTTACAGTTCATTACTCCCTGCATTGCTCACCAGGTTGGAGCATCTGCTTGATTTAGCTGGTGAGTGATTGCTTTGCATGTACAGATCGGCTACTTTGGAGGCTTGAGGCTTCTTTTTCTGTGAAAAAAACAAGAGACAGAGAGGTGTGATTTGGGGAGATGGAGTAGAAAGGTTGCACCATGTTTAACATTATGTAAATTTAAAACGACACAGGAAGaggaacaaaacatttattatataaattgagtttcttacagtgtgctggattatttattttggaatGAGGATGGTGTAGGTTATAAATCAAGTGCAAAGCCATTAGACCCACCATTTCAGAAGATTGCCCTGTTCTTTAAAGGAAAACCTATTACATGCTTATGGAAAGGTGCACATCCCTCAAAAAAGCCCAGGAGGGCAAACCATCAAACTCTCTACTCTGAgaacatttaaatttataaacaTCTGGTGTGTATTAGGGAACaattaaataaaggtgaaaatttgcatttgtggatGGAAAGTGGGTTATGAGAATCAAGGGACTGAAATGTAATACAAAACTTGGAACTTGATGATTGTTTTGGGTTCCGCACGAATTAGGATGCTGGAAAACTACTCCAGGCGTTATTGAGTCTCTGTATTAAAAGAGTAAAAGAGTTCCAACTCTCCAGAGGGAGTAATGAGTTTGACTAATCTCAGATTGTCTTTTATTTTAGGCGTAATGCGGAGGTTAATTACTCGATGATATGTTTGCgtctaaaaacaaaacagcaaataaTCAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065195 True 2267 lncRNA 0.36 1 37342328 37344594

Neighbor

gene id symbol gene type direction distance location
XLOC_032988 opa1 coding downstream 547109 36717985 ~ 36795219 (-)
XLOC_032991 CT033823.2 coding downstream 572259 36769939 ~ 36770069 (-)
XLOC_032990 CT033823.3 coding downstream 598077 36744134 ~ 36744251 (-)
XLOC_032989 CT033823.1 coding downstream 608502 36733709 ~ 36733826 (-)
XLOC_032987 NA coding downstream 714231 36621310 ~ 36628097 (-)
XLOC_032993 cthl coding upstream 45089 37389683 ~ 37403444 (-)
XLOC_032994 cth coding upstream 64964 37409558 ~ 37422841 (-)
XLOC_032995 nit2 coding upstream 86575 37431169 ~ 37441520 (-)
XLOC_032996 BX324166.2 coding upstream 94661 37439255 ~ 37439370 (-)
XLOC_032997 BX324166.3 coding upstream 102434 37447028 ~ 37447143 (-)
XLOC_032985 BX950188.3 non-coding downstream 839998 36479193 ~ 36502330 (-)
XLOC_033003 BX322552.1 non-coding upstream 270772 37615366 ~ 37615483 (-)
XLOC_033006 CR407584.1 non-coding upstream 787917 38132511 ~ 38358080 (-)
XLOC_033008 CR628341.2 non-coding upstream 1253075 38597669 ~ 38597784 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G254675 NA non-coding CI01000059 null 6123584 ~ 6123799 (+)