G1400990



Basic Information


Item Value
gene id G1400990
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 65093483 ~ 65094258 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1599889
tgagagagagagttatggaGACTAGAAAGGCAGTAGGAGCTGAGAGAgttaaggagaggagaaaggcagtAGGAGCTGAGAGAGttatggagaggagaaaggcagtaggagctgagagagagagttatggagaggagaaaggcagTAGGAGTTGAGAGAGCAGGGTagggcaggcagaggagttgTCTGTCAGTGACCCATAGAGTCCAAGAG

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1599889 True 213 lncRNA 0.51 2 65093483 65094258

Neighbor


gene id symbol gene type direction distance location
LOC110492545 lrtm1 coding downstream 102012 64984262 ~ 64991471 (-)
LOC110492544 NA coding downstream 404902 64682618 ~ 64688581 (-)
LOC110492543 LOC106566530 coding downstream 419863 64666724 ~ 64673620 (-)
LOC110492546 NA coding downstream 426965 64653790 ~ 64666518 (-)
parapinopsina LOC100135831 coding downstream 442916 64645401 ~ 64650567 (-)
wnt5a LOC106566524 coding upstream 531 65094789 ~ 65129767 (-)
LOC110518541 LOC106566519 coding upstream 37392 65131650 ~ 65620292 (-)
tlr9 tlr9 coding upstream 528917 65623175 ~ 65628493 (-)
apeh apeh coding upstream 538872 65633130 ~ 65644141 (-)
cttnbp2nlb cttnbp2nl coding upstream 566022 65660280 ~ 65704778 (-)
G1400978 NA non-coding downstream 10860 65082204 ~ 65082623 (-)
G1400962 NA non-coding downstream 20053 65073201 ~ 65073430 (-)
G1400953 NA non-coding downstream 30447 65062816 ~ 65063036 (-)
G1400946 NA non-coding downstream 34593 65058653 ~ 65058890 (-)
G1400942 NA non-coding downstream 36675 65056586 ~ 65056808 (-)
G1401011 NA non-coding upstream 22155 65116413 ~ 65116805 (-)
G1401393 NA non-coding upstream 50787 65145045 ~ 65145531 (-)
G1401396 NA non-coding upstream 57419 65151677 ~ 65151911 (-)
G1401400 NA non-coding upstream 61780 65156038 ~ 65156422 (-)
si:ch211-117c9.5 LOC106566567 other downstream 645011 64445355 ~ 64485638 (-)
G1400578 NA other downstream 783027 64309883 ~ 64310456 (-)
G1400565 LOC106575828 other downstream 807490 64285628 ~ 64285993 (-)
G1400564 LOC106597321 other downstream 808936 64284207 ~ 64284547 (-)
G1400552 NA other downstream 836050 64256926 ~ 64257433 (-)
G1401617 NA other upstream 541224 65635482 ~ 65636372 (-)
LOC110492562 LOC106568106 other upstream 626249 65715711 ~ 65754610 (-)
G1402686 srpk3 other upstream 1331293 66425551 ~ 66426322 (-)
G1402707 LOC106566505 other upstream 1390643 66484901 ~ 66494667 (-)
G1403498 NA other upstream 2349163 67443421 ~ 67444179 (-)

Expression



Co-expression Network