G1401034


Basic Information

Item Value
gene id G1401034
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 65161145 ~ 65163351 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1599949
GATTCCAGGCCCTCTGCATGACATGGTCTGGTGATCTCTGGCTTGACGTTGTCCtaaacacagatctaggatcagcttacttGAACCATTACTGGAAAgattttccactgagtgacactattatggatctggttttccactgagtgacactattatggatctggttttccactgagtgacactattatggatctggttttccactgagtgacactattatggatctggttttctaCTGAGtgccactattatggatctggttttccactgagtgacactattatggatctggttttccactagtgacactattatggatctggttttccactgagtgacactattatggatctggttttccactgagtgacactattatggatctggttttccactagtgacactattatggatctggttttccactgagtgacactattatggatctggttttccactagtgacactattatggatctgattttccactgagtgacactattatggatctggttttccactgatgacactattgtggatctggttttccactgagtgacactattatggatctggttttccactgagtgacactattatggatctggttttccactgagtgacactattatggatctggttttccactagtgacactattatggatctggttttctactgagtgacactattatggatctggttttccactagtgacactattatggatctggttttccactgagtgacactattatggatctggttttccactgagtgacactattatggatctggttttccactgagtgacactattatggatctggttttccactgacactattatggatctggttttccactagtgacactattatggatctggttttccactgagtgacactattatggatctggttttccactagtgacactattatggatctggttttccactagtgacactattatggatctggttttccactgagtgacactattatggatctggttttccactgagtgacactattatggatctggttttccactgagtgacactattatggatctggttttccactgacactattatggatctggttttccactagtgacactattatggatctggttttccactagtgacactattatggatctggtattccactgacactattatggatctggttttccactgagtgacactattatggatctggttttccactgagtgacactattatggatctggttttccactagtgacactattatggatctggttttccactagtgacactattatggatctggttttccactagtgacactattatggatctggttttccactgagtgacactattatggatctggttttccactgacactattatggatctggttttccactgacactattatggatctggttttccactgagtgacactattatggatctggttttccactgagtgacactattatggatctggtttttcACTGAgcgacactattatggatctggttttccactgagtgacactattatggatctggttttccactagtgacactattatggatctggttttccactgacactattatggatctggttttccactgagtgacactattatggatctggttttccactgagtgacactattatggatctggttttccactgagtgacactattatggatctggttttccactagtgacactattatggatctggttttccactgagtgacactattatggatctggttttccactgagtgacactattatggatctggttttccactgagtgacactattatggatctggttttccactgagtgacactattatggatctggttttccactagtgacactattatggatctggttttccactgagtgacactattatggatctggttttccactgagtaacactattatggatctggttttccactagtgacactattatggatctggttttccactgacactattatggatctggttttccactgagtgacactattatggatctggttttccactgagtgacactattatggatctggttttccact

Function

NR:

description
PREDICTED: uncharacterized protein LOC106590899

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1599949 True 2111 lncRNA 0.40 2 65161145 65163351

Neighbor

gene id symbol gene type direction distance location
cacna2d3a LOC102307471 coding upstream 124862 64722542 ~ 65037527 (+)
LOC110492553 LOC106566530 coding upstream 487313 64670768 ~ 64673832 (+)
LOC100136613 LOC106566534 coding upstream 515964 64630443 ~ 64645181 (+)
LOC110519666 LOC108235233 coding upstream 538677 64517151 ~ 64622468 (+)
LOC110492542 LOC106566540 coding upstream 650369 64506307 ~ 64510776 (+)
capza1b capza1 coding downstream 485005 65648356 ~ 65653937 (+)
LOC110492564 LOC102303593 coding downstream 832676 65996027 ~ 66267216 (+)
srpk3 srpk3 coding downstream 1260538 66423889 ~ 66434911 (+)
comta LOC106566505 coding downstream 1313926 66477277 ~ 66494685 (+)
grm6a LOC106566502 coding downstream 1361385 66524736 ~ 66565764 (+)
G1401027 NA non-coding upstream 8113 65152791 ~ 65153032 (+)
G1401026 NA non-coding upstream 8401 65152472 ~ 65152744 (+)
G1401025 NA non-coding upstream 8848 65151910 ~ 65152297 (+)
G1401019 NA non-coding upstream 27889 65131871 ~ 65133256 (+)
G1401018 NA non-coding upstream 29605 65131316 ~ 65131540 (+)
G1401035 NA non-coding downstream 18502 65181853 ~ 65182096 (+)
G1401044 NA non-coding downstream 36449 65199800 ~ 65200230 (+)
G1401045 NA non-coding downstream 42757 65206108 ~ 65206507 (+)
G1401049 NA non-coding downstream 50316 65213667 ~ 65214042 (+)
G1401050 NA non-coding downstream 51402 65214753 ~ 65214978 (+)
G1400202 LOC106566541 other upstream 686857 64473548 ~ 64476421 (+)
G1400095 NA other upstream 913443 64247297 ~ 64247702 (+)
G1400047 NA other upstream 934704 64159170 ~ 64244664 (+)
G1400056 top1 other upstream 981690 64166374 ~ 64179455 (+)
G1399694 NA other upstream 1475001 63685566 ~ 63686144 (+)
G1401041 NA other downstream 26639 65189990 ~ 65190275 (+)
G1401074 NA other downstream 95164 65258515 ~ 65258844 (+)
G1401354 NA other downstream 732540 65895891 ~ 65897063 (+)
G1401782 NA other downstream 855650 66019001 ~ 66024245 (+)
G1402066 NA other downstream 1379960 66543311 ~ 66543685 (+)

Expression


Co-expression Network