XLOC_032999 (plcxd1)


Basic Information

Item Value
gene id XLOC_032999
gene name plcxd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 37460269 ~ 37469775 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064115
TGTCAGACTGGCCGGGTGGAGAATGCGGTGGACAAGTGCGCGGTTTCTATCATCATTTATACCTCTGAAATCGCTCCAAATTGTAACTTATCTTAACGTAGTGTTTAGAATCGTTTGACGAATGAAATGAGAAGGAAAGTGTAAAAATAACTTAAACGTTATCATCATTTTACGGAGAAGAGAGAGTTTCTTCCGGACTGTTTCGGTTATCAACGCGGGATTTTCTTGTGGATACCCAGCCCTGTTCAACCTTGTACCGCCAATGATAAGTTCAGCATCGCGTAGCGTCCACTTGACTTTTCCACGACCACCATGGTGCTTTGGGAGCTTGTAAAGTGGACGAATATTATCTCGTTTCTTCGCAGCCTTCGAGTCCTCCAGCATCAGCGTCTGTCTGTTGAAGCCGGTTTAACCTTACTCACGTGGAGCTAATTAAAATAGTTAATTTATGTAATATTCGTCCTGGATTTAGAAACAAAAAGCCTGTAATCCAAGATGACATCGGAGGTCAGTCAAGTGTCATTGAGTGAGCTGCCGATGGACAACTGGATGGCCCATCTGCCCAGTGCACTGTGGGATACCCCTATCTGTTACATGGCTATTCCAGGAAGCCATAATGCCATAACTTACTGTCTGGATAAGAATGACCGTTCCCCAGTGGACCTTACCCAACCAGATATGTTGCAAAAGCTGGACAAGTACATGAAACCCATCATAAGACCATTTGTTTACAAGTGGGCAATAGCACAGGAGTCTTGCATTAGGGAGCAGTTAGATTGTGGAGTGCGATACTGTGACCTGAGGATTGCACATCGGCCTAATGACAGATCAAATGATCTCTACTTCTACCATGGGGTTTATACCACTATAACTGTGGAGACTGTATTAAAAGAGATCAGAGAGTGGTTGGATGTTCACCCAAAAGAAGTGGTCATCCTCTCATTTAGCCACTTCCTGGGCCTCAGTCAAGAGCTTCACTCATTGCTTGTCTCAACTATAAAGAGTGTTTTTGATTCTAAATTGTGCCCTAAAATGGAGCGTGTAACACTACGGAAATTATGGAGTGAGGGTCATCAAGTTATCGTTTCCTATGAGCACAATACTGCCAACTGCAACAGAGAATTGTGGTCCCATATACCTTATTGGTGGGCCAACAAGTCCAAAGCTGAAGCACTGATCGAGGAATTTGAGCGTAGGAAACAAAATGGCCGACCAGGCGGCTTCTTTGTGACTGGCATTAATCTTACTGAAGACCTGAAGTACATATGCTCCCATCCCACAGAATCACTGAAGGATATGGTAATGTCCACATACCCCACGTTACTCAGCTGGGTCAAGCAACAGAAGCCCGGCTCCAACACCGGCTCCCTCAACATCATAGCTGGAGACTTTGTTACAGAAAGCCAATTCATACCAACCGTCATTGCACTCAATGAAAATCTCCTCAACAGGACCATTTTACCACAACCTTGATGCTCTTTTATTAGTTTGCAAAATGTATTTAACATTGAAAAAATAGTGTTTcttgttcatgtttttttaacaCTAGTCAACTTTGCACTTTTTTATTAGGGTGCTTACACATTAGACTTTATGCTGCGTCACCGCCATTCATTTCAGTGATGGTGCATTGAAACAAGAGTTTGCTCCATCAACCAAAAGCACTTTCCACACCTGTCTGTCAAATCAGAGAGCTCTATCTAATGTGTAAGCATTCTGAGGTTGATATAAATTTGAGTTATGGGTAGAATAACGTAATGCACTGACTTTTATGACTTGAATTTGATCATATTAAGCTTATTTATGCAGTCTTCTATATATACCTCGGattttgcaaaacaaaaatgGTAATTATATTTTAGGATGTCATTGGGAAGGTCCGGGTTAATACAACTTTAGCCTCAGACACAAGCACATTACTGGAcacaataagtaataataatttcacCATTTGCATGAGATTTGCTGAAGACTACTCAATGCAAGCCTGCACAAATAGGATTATCAAACACTCAGGATTGTTCAGTTATGATATATCTTTTCGACTTTGTACTGTGTGGAATGGCAATATGATTCCAGTAAGTACATGTCTGCATGGTGCATACAATCAGACGCATGTAGAGGCACTGGAATATTTTGTGGTTGTGCATATGTTCTCTGACACAGCATGCAGTTTAATCAATATGTATCAGTTGGCATTACAAACAAAAGTGcttatattaactaatattaatagtTGGATGGAATTTAATATATTCGCATTTCTTACCTGAGGATTTACAGTGAATTAAACATATCCATAAATGTTATTAGATTTGTCTGCATTTCAGCTAAAATTGCTATCTAGCAAATTTGCCAGAGCCCTAAAGCTGTTCTGaagtttgttttattctatttaatcTGTAAATGCATTCATTGTACGCAATAAACATGCACTTATGGTTGTGGAAACGTTATTTTAGGTCCAAATAAAGCCACTTTTTAGAGAAAACTAAACTTGCTTCTGTCAGGACACAAACAAGCAAAAAGGAGAAAGCTTACATGGTAAAAGATACTGTGCTGTTTTATTGATTGAAAGCATTTAGTCAAAGTTAACCTTTGACTGATGGTTTTGTGTTATTTTCCACCTCAAAATATGATAAGGTGATGAAAGTTCAGCAGATTTCCACATCacaacccc
>TCONS_00064116
ATGACATCGGAGGTCAGTCAAGTGTCATTGAGTGAGCTGCCGATGGACAACTGGATGGCCCATCTGCCCAGTGCACTGTGGGATACCCCTATCTGTTACATGGCTATTCCAGGAAGCCATAATGCCATAACTTACTGTCTGGATAAGAATGACCGTTCCCCAGTGGACCTTACCCAACCAGATATGTTGCAAAAGCTGGACAAGTACATGAAACCCATCATAAGACCATTTGTTTACAAGTGGGCAATAGCACAGGAGTCTTGCATTAGGGAGCAGTTAGATTGTGGAGTGCGATACTGTGACCTGAGGATTGCACATCGGCCTAATGACAGATCAAATGATCTCTACTTCTACCATGGGGTTTATACCACTATAACTGTGGAGACTGTATTAAAAGAGATCAGAGAGTGGTTGGATGTTCACCCAAAAGAAGTGGTCATCCTCTCATTTAGCCACTTCCTGGGCCTCAGTCAAGAGCTTCACTCATTGCTTGTCTCAACTATAAAGAGTGTTTTTGATTCTAAATTGTGCCCTAAAATGGAGCGTGTAACACTACGGAAATTATGGAGTGAGGGTCATCAAGTTATCGTTTCCTATGAGCACAATACTGCCAACTGCAACAGAGAATTGTGGTCCCATATACCTTATTGGTGGGCCAACAAGTCCAAAGCTGAAGCACTGATCGAGGAATTTGAGCGTAGGAAACAAAATGGCCGACCAGGCGGCTTCTTTGTGACTGGCATTAATCTTACTGAAGACCTGAAGTACATATGCTCCCATCCCACAGAATCACTGAAGGATATGGTAATGTCCACATACCCCACGTTACTCAGCTGGGTCAAGCAACAGAAGCCCGGCTCCAACACCGGCTCCCTCAACATCATAGCTGGAGACTTTGTTACAGAAAGCCAATTCATACCAACCGTCATTGCACTCAATGAAAATCTCCTCAACAGGACCATTTTACCACAACCTTGA

Function

symbol description
plcxd1 Predicted to enable phosphoric diester hydrolase activity. Predicted to act upstream of or within lipid metabolic process. Orthologous to human PLCXD1 (phosphatidylinositol specific phospholipase C X domain containing 1).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-240 Predicted to enable phosphoric diester hydrolase activity. Predicted to act upstream of or within lipid metabolic process. Orthologous to human PLCXD1 (phosphatidylinositol specific phospholipase C X domain containing 1).

Ensembl:

ensembl_id ENSDARG00000088798

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064115 False 2680 mRNA 0.40 7 37460269 37469775
TCONS_00064116 True 978 mRNA 0.46 6 37461476 37468971

Neighbor

gene id symbol gene type direction distance location
XLOC_032998 si:dkey-66a8.7 coding downstream 91 37451341 ~ 37460178 (-)
XLOC_032997 BX324166.3 coding downstream 13126 37447028 ~ 37447143 (-)
XLOC_032995 nit2 coding downstream 18749 37431169 ~ 37441520 (-)
XLOC_032996 BX324166.2 coding downstream 20899 37439255 ~ 37439370 (-)
XLOC_032994 cth coding downstream 37428 37409558 ~ 37422841 (-)
XLOC_033000 jade3 coding upstream 8990 37478765 ~ 37513133 (-)
XLOC_033001 rp2 coding upstream 44136 37513911 ~ 37525879 (-)
XLOC_033002 chst7 coding upstream 134193 37603968 ~ 37622576 (-)
XLOC_033003 BX322552.1 coding upstream 145591 37615366 ~ 37615483 (-)
XLOC_033004 nipa2 coding upstream 263833 37733608 ~ 37745508 (-)
XLOC_032992 NA non-coding downstream 115675 37342328 ~ 37344594 (-)
XLOC_032991 CT033823.2 non-coding downstream 690200 36769939 ~ 36770069 (-)
XLOC_032990 CT033823.3 non-coding downstream 716018 36744134 ~ 36744251 (-)
XLOC_033006 CR407584.1 non-coding upstream 662736 38132511 ~ 38358080 (-)
XLOC_033008 CR628341.2 non-coding upstream 1127894 38597669 ~ 38597784 (-)
XLOC_033009 NA non-coding upstream 1289771 38759546 ~ 38764326 (-)
XLOC_033024 NA non-coding upstream 2022071 39491846 ~ 39521832 (-)

Expression


Co-expression Network